IslandPath Analysis: Geobacter bemidjiensis Bem



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.32   STD DEV: 4.83
Geobacter bemidjiensis Bem, complete genome - 1..4615150
4018 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.23	-1	166..1542	+	458	197116403	-	Gbem_0001	-	chromosomal replication initiator protein DnaA
2	 53.80	-1	1757..2875	+	372	197116404	-	Gbem_0002	-	DNA polymerase III, beta subunit
3	 58.45	0	3017..4111	+	364	197116405	-	Gbem_0003	-	DNA replication and repair protein RecF
4	 60.14	0	4120..6510	+	796	197116406	-	Gbem_0004	-	DNA gyrase, B subunit
5	 60.81	0	6866..9376	+	836	197116407	-	Gbem_0005	-	DNA gyrase, A subunit
6	 63.39	0	11070..12077	+	335	197116408	-	Gbem_0008	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain protein
7	 60.79	0	12272..14536	+	754	197116409	-	Gbem_0009	-	multi-sensor signal transduction histidine kinase
8	 64.71	0	14523..16058	+	511	197116410	-	Gbem_0010	-	multi-sensor signal transduction histidine kinase
9	 62.94	0	16365..17357	+	330	197116411	-	Gbem_0011	-	histidine kinase
10	 62.29	0	17567..19714	+	715	197116412	-	Gbem_0012	-	multi-sensor signal transduction histidine kinase
11	 64.08	0	19747..20673	+	308	197116413	-	Gbem_0013	-	daunorubicin resistance ABC transporter ATPase subunit
12	 60.19	0	20695..21450	+	251	197116414	-	Gbem_0014	-	ABC-2 type transporter
13	 60.54	0	21667..22743	+	358	197116415	-	Gbem_0015	-	Radical SAM domain protein
14	 62.75	0	22877..23896	+	339	197116416	-	Gbem_0016	-	uroporphyrinogen decarboxylase
15	 58.81	0	24012..24965	+	317	197116417	-	Gbem_0017	-	magnesium and cobalt transport protein CorA
16	 63.33	0	25221..26090	+	289	197116418	-	Gbem_0018	-	histidine kinase
17	 59.93	0	26173..26454	+	93	197116419	-	Gbem_0019	-	Excinuclease ABC C subunit domain protein
18	 60.21	0	26479..27516	-	345	197116420	-	Gbem_0020	-	Di-haem cytochrome c peroxidase
19	 66.17	+1	27683..29092	-	469	197116421	-	Gbem_0021	-	glutamate synthase (NADPH), homotetrameric
20	 62.78	0	29089..29937	-	282	197116422	-	Gbem_0022	-	oxidoreductase FAD/NAD(P)-binding domain protein
21	 60.96	0	30217..31092	-	291	197116423	-	Gbem_0023	-	protein of unknown function DUF6 transmembrane
22	 48.15	-2	31125..31448	-	107	197116424	-	Gbem_0024	-	transcriptional modulator of MazE/toxin, MazF
23	 50.20	-2	31442..31696	-	84	197116425	-	Gbem_0025	-	transcriptional regulator/antitoxin, MazE
24	 62.28	0	31964..32806	-	280	197116426	-	Gbem_0026	-	oxidoreductase FAD/NAD(P)-binding domain protein
25	 60.93	0	32984..33994	-	336	197116427	-	Gbem_0027	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
26	 64.55	0	34153..35097	-	314	197116428	-	Gbem_0028	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
27	 63.45	0	35094..35621	-	175	197116429	-	Gbem_0029	-	methyl-viologen-reducing hydrogenase delta subunit
28	 63.21	0	35773..37770	-	665	197116430	-	Gbem_0030	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
29	 64.26	0	37804..38757	-	317	197116431	-	Gbem_0031	-	protein of unknown function DUF224 cysteine-rich region domain protein
30	 60.85	0	38754..39338	-	194	197116432	-	Gbem_0032	-	heterodisulfide reductase subunit
31	 63.80	0	39897..41606	+	569	197116433	-	Gbem_0033	-	ABC transporter related protein
32	 63.58	0	41608..43419	+	603	197116434	-	Gbem_0034	-	ABC transporter related protein
33	 64.89	0	43462..45372	+	636	197116435	-	Gbem_0035	-	selenocysteine-specific translation elongation factor
34	 63.95	0	45505..47454	-	649	197116436	-	Gbem_0036	-	hypothetical protein
35	 61.66	0	47484..48302	-	272	197116437	-	Gbem_0037	-	ATPase associated with various cellular activities AAA_5
36	 58.33	0	48450..48629	-	59	197116438	-	Gbem_0038	-	hypothetical protein
37	 61.22	0	48629..49582	-	317	197116439	-	Gbem_0039	-	ferrochelatase
38	 63.89	0	49794..51341	-	515	197116440	-	Gbem_0040	-	methyl-accepting chemotaxis sensory transducer
39	 52.91	-1	51529..51717	-	62	197116441	-	Gbem_0041	-	hypothetical protein
40	 62.09	0	51985..52815	+	276	197116442	-	Gbem_0042	-	hypothetical protein
41	 61.85	0	52879..54498	+	539	197116443	-	Gbem_0043	-	cytochrome c oxidase, subunit I
42	 57.00	0	54495..55094	+	199	197116444	-	Gbem_0044	-	cytochrome c oxidase subunit III
43	 59.93	0	55211..55492	+	93	197116445	-	Gbem_0045	-	caa(3)-type oxidase, subunit IV
44	 60.82	0	55502..56407	+	301	197116446	-	Gbem_0046	-	cytochrome c oxidase, subunit II
45	 66.92	+1	56446..57222	+	258	197116447	-	Gbem_0047	-	UbiA prenyltransferase
46	 53.85	-1	57239..57433	+	64	197116448	-	Gbem_0048	-	hypothetical protein
47	 64.82	0	57638..58828	-	396	197116449	-	Gbem_0049	-	pyridoxal phosphate-dependent acyltransferase
48	 62.84	0	58851..59894	-	347	197116450	-	Gbem_0050	-	L-threonine 3-dehydrogenase
49	 57.78	0	60050..60229	+	59	197116451	-	Gbem_0051	-	hypothetical protein
50	 61.80	0	60472..63636	+	1054	197116452	-	Gbem_0052	-	multi-sensor hybrid histidine kinase
51	 64.67	0	63912..64913	+	333	197116453	-	Gbem_0053	-	OmpA/MotB domain protein
52	 64.09	0	65087..66094	-	335	197116454	-	Gbem_0054	-	peptidase M28
53	 61.97	0	66327..68432	+	701	197116455	-	Gbem_0055	-	protein of unknown function DUF323
54	 65.46	+1	68429..69586	+	385	197116456	-	Gbem_0056	-	aminotransferase class I and II
55	 55.66	0	69610..70254	+	214	197116457	-	Gbem_0057	-	hypothetical protein
56	 51.75	-1	70364..71047	-	227	197116458	-	Gbem_0058	-	RES domain protein
57	 57.11	0	71047..71454	-	135	197116459	-	Gbem_0059	-	hypothetical protein
58	 40.76	-2	72062..72829	-	255	197116460	-	Gbem_0060	-	hypothetical protein
59	 42.91	-2	73065..73868	-	267	197116461	-	Gbem_0061	-	FRG domain protein
60	 41.27	-2	73976..74794	-	272	197116462	-	Gbem_0062	-	Tetratricopeptide TPR_2 repeat protein
61	 62.35	0	74971..78072	-	1033	197116463	-	Gbem_0063	-	acriflavin resistance protein
62	 62.08	0	78069..79202	-	377	197116464	-	Gbem_0064	-	efflux transporter, RND family, MFP subunit
63	 61.66	0	79674..81410	-	578	197116465	-	Gbem_0065	-	histidine kinase
64	 61.54	0	81597..82259	+	220	197116466	-	Gbem_0066	-	transcriptional regulator, Crp/Fnr family
65	 66.27	+1	82695..83693	+	332	197116467	-	Gbem_0067	-	NADH ubiquinone oxidoreductase 20 kDa subunit
66	 67.80	+1	83690..84217	+	175	197116468	-	Gbem_0068	-	NADH dehydrogenase (ubiquinone) 30 kDa subunit
67	 67.13	+1	84214..85293	+	359	197116469	-	Gbem_0069	-	NADH-ubiquinone oxidoreductase chain 49kDa
68	 62.93	0	85302..85676	+	124	197116470	-	Gbem_0070	-	hydrogenase nickel insertion protein HypA
69	 65.79	+1	85657..86226	+	189	197116471	-	Gbem_0071	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
70	 65.93	+1	86223..88130	+	635	197116472	-	Gbem_0072	-	carbon-monoxide dehydrogenase, catalytic subunit
71	 65.00	0	88176..88295	+	39	197116473	-	Gbem_0073	-	hypothetical protein
72	 68.47	+1	88292..89068	+	258	197116474	-	Gbem_0074	-	Cobyrinic acid ac-diamide synthase
73	 60.23	0	89459..90142	+	227	197116475	-	Gbem_0075	-	response regulator receiver modulated PilZ sensor protein
74	 64.07	0	90435..92633	+	732	197116476	-	Gbem_0076	-	UvrD/REP helicase
75	 63.28	0	92690..93427	+	245	197116477	-	Gbem_0077	-	hypothetical protein
76	 66.57	+1	93585..94586	+	333	197116478	-	Gbem_0078	-	4-hydroxythreonine-4-phosphate dehydrogenase
77	 62.81	0	94612..95571	+	319	197116479	-	Gbem_0079	-	glycosyl transferase family 51
78	 61.17	0	95859..96932	+	357	197116480	-	Gbem_0080	-	response regulator receiver modulated metal dependent phosphohydrolase
79	 64.14	0	96951..99365	+	804	197116481	-	Gbem_0081	-	diguanylate cyclase with PAS/PAC sensor
80	 62.89	0	99397..100401	-	334	197116482	-	Gbem_0082	-	thiamine biosynthesis protein
81	 64.26	0	101019..102677	+	552	197116483	-	Gbem_0083	-	General secretory system II protein E domain protein
82	 63.04	0	102690..103763	+	357	197116484	-	Gbem_0084	-	twitching motility protein
83	 67.26	+1	103767..104936	+	389	197116485	-	Gbem_0085	-	aminotransferase class I and II
84	 62.98	0	105215..106054	-	279	197116486	-	Gbem_0086	-	alpha/beta hydrolase fold
85	 55.71	0	106490..106708	+	72	197116487	-	Gbem_0087	-	hypothetical protein
86	 64.15	0	106762..110661	+	1299	197116488	-	Gbem_0088	-	multicopper oxidase type 2
87	 61.64	0	110803..111777	-	324	197116489	-	Gbem_0089	-	Rhodanese domain protein
88	 62.40	0	112025..113854	-	609	197116490	-	Gbem_0090	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
89	 64.20	0	113940..115316	-	458	197116491	-	Gbem_0091	-	UDP-N-acetylglucosamine pyrophosphorylase
90	 58.29	0	115466..116026	+	186	197116492	-	Gbem_0092	-	hypothetical protein
91	 66.46	+1	116023..117495	+	490	197116493	-	Gbem_0093	-	Radical SAM domain protein
92	 63.64	0	117710..117874	+	54	197116494	-	Gbem_0094	-	hypothetical protein
93	 60.18	0	118311..120161	+	616	197116495	-	Gbem_0095	-	hypothetical protein
94	 62.91	0	120264..121301	-	345	197116496	-	Gbem_0096	-	guanosine monophosphate reductase
95	 62.98	0	121535..122782	+	415	197116497	-	Gbem_0097	-	major facilitator superfamily MFS_1
96	 65.20	+1	122824..123849	-	341	197116498	-	Gbem_0098	-	dihydrouridine synthase DuS
97	 60.77	0	123930..124421	-	163	197116499	-	Gbem_0099	-	peptidylprolyl isomerase FKBP-type
98	 57.41	0	124578..124793	+	71	197116500	-	Gbem_0100	-	hypothetical protein
99	 56.25	0	124808..125287	-	159	197116501	-	Gbem_0101	-	hypothetical protein
100	 64.66	0	125570..126217	+	215	197116502	-	Gbem_0102	-	protein of unknown function DUF480
60.32	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.