IslandPath Analysis: Caulobacter crescentus CB15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.28   STD DEV: 3.33
Caulobacter crescentus CB15, complete genome - 1..4016947
3737 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.30	0	160..1107	+	315	16124257	-	CC_0001	-	hypothetical protein
2	 66.17	0	1104..1703	+	199	16124258	-	CC_0002	-	Maf/YceF/YhdE family protein
3	 68.65	0	1700..2557	+	285	16124259	-	CC_0003	-	shikimate 5-dehydrogenase
4	 66.97	0	2490..3158	+	222	16124260	coaE	CC_0004	-	dephospho-CoA kinase
5	 64.15	0	3190..3903	+	237	16124261	-	CC_0005	-	DNA polymerase III, epsilon subunit
6	 67.43	0	4022..4810	+	262	16124262	-	CC_0006	-	enoyl-CoA hydratase/isomerase family protein
7	 65.58	0	4960..5235	+	91	16124263	-	CC_0007	-	ribosomal protein S20
8	 67.35	0	5636..7108	+	490	16124264	-	CC_0008	-	chromosomal replication initiator protein DnaA
9	 67.72	0	7170..7832	-	220	16124265	-	CC_0009	-	DNA alkylation damage repair protein AlkB
10	 64.77	0	8165..10060	+	631	16124266	-	CC_0010	-	dnaK protein
11	 68.05	0	10223..11380	+	385	16124267	-	CC_0011	-	dnaJ protein
12	 70.76	+1	11467..14178	+	903	16124268	-	CC_0012	-	DNA mismatch repair protein
13	 67.62	0	14199..17021	+	940	16124269	-	CC_0013	-	PII uridylyl-transferase
14	 66.84	0	17018..17578	-	186	16124270	-	CC_0014	-	molybdenum cofactor biosynthesis protein C
15	 65.40	0	17491..18042	-	183	16124271	-	CC_0015	-	molybdenum cofactor biosynthesis protein B
16	 68.21	0	18043..18495	-	150	16124272	-	CC_0016	-	molybdopterin converting factor, subunit 2
17	 71.25	+1	18492..18731	-	79	16124273	-	CC_0017	-	molybdopterin converting factor, subunit 1
18	 67.33	0	18735..19784	-	349	16124274	moaA	CC_0018	-	molybdenum cofactor biosynthesis protein A
19	 69.83	0	19815..20447	+	210	16124275	-	CC_0019	-	hypothetical protein
20	 65.78	0	20444..20668	-	74	16124276	-	CC_0020	-	hypothetical protein
21	 67.08	0	20840..23032	-	730	16124277	-	CC_0021	-	isoquinoline 1-oxidoreductase, beta subunit
22	 67.81	0	23029..23553	-	174	16124278	-	CC_0022	-	isoquinoline 1-oxidoreductase, alpha subunit
23	 66.18	0	23550..24170	-	206	16124279	-	CC_0023	-	hypothetical protein
24	 73.14	+1	24133..24981	+	282	16124280	-	CC_0024	-	siroheme synthase-related protein
25	 65.70	0	24991..26643	-	550	16124281	-	CC_0025	-	major facilitator family transporter
26	 68.18	0	26701..29403	-	900	16124282	-	CC_0026	-	sensory box histidine kinase/response regulator
27	 65.79	0	29502..30185	-	227	161485654	-	CC_0027	-	putative hydroxylase
28	 66.12	0	30337..32892	-	851	16124284	-	CC_0028	-	TonB-dependent receptor
29	 68.40	0	32914..33546	+	210	16124285	-	CC_0029	-	amino acid transporter LysE
30	 68.84	0	33595..34329	+	244	16124286	-	CC_0030	-	ribonuclease T2 family protein
31	 63.57	-1	34312..34698	-	128	16124287	-	CC_0031	-	vapC protein
32	 62.50	-1	34699..34938	-	79	16124288	-	CC_0032	-	vapB family protein
33	 58.45	-2	35047..35667	-	206	16124289	-	CC_0033	-	hypothetical protein
34	 64.75	0	35824..37962	-	712	16124290	-	CC_0034	-	polynucleotide phosphorylase/polyadenylase
35	 62.22	-1	38211..38480	-	89	16124291	-	CC_0035	-	ribosomal protein S15
36	 67.20	0	38495..39427	-	310	16124292	truB	CC_0036	-	tRNA pseudouridine synthase B
37	 65.11	0	39430..39879	-	149	16124293	rbfA	CC_0037	-	ribosome-binding factor A
38	 67.93	0	39980..40768	-	262	16124294	-	CC_0038	-	dienelactone hydrolase family protein
39	 68.92	0	40828..41403	-	191	16124295	-	CC_0039	-	hypothetical protein
40	 71.87	+1	41403..41921	-	172	16124296	-	CC_0040	-	hypothetical protein
41	 60.53	-2	41960..42529	-	189	16124297	-	CC_0041	-	hypothetical protein
42	 70.04	0	42585..45698	-	1037	16124298	infB	CC_0042	-	translation initiation factor IF-2
43	 68.05	0	45893..46543	-	216	16124299	-	CC_0043	-	hypothetical protein
44	 65.51	0	46622..48268	-	548	16124300	nusA	CC_0044	-	transcription elongation factor NusA
45	 66.05	0	48271..48753	-	160	16124301	-	CC_0045	-	hypothetical protein
46	 64.52	0	48753..48845	-	30	16124302	-	CC_0046	-	hypothetical protein
47	 63.48	-1	49104..49637	+	177	16124303	-	CC_0047	-	inorganic pyrophosphatase
48	 64.72	0	49653..50114	+	153	16124304	-	CC_0048	-	hypothetical protein
49	 67.28	0	50131..50946	-	271	16124305	trmB	CC_0049	-	tRNA (guanine-N(7))-methyltransferase
50	 66.34	0	50901..52124	-	407	16124306	-	CC_0050	-	S-adenosylmethionine synthetase
51	 63.17	-1	52244..52672	-	142	16124307	-	CC_0051	-	Cro/CI family transcriptional regulator
52	 67.04	0	52706..54298	-	530	16124308	-	CC_0052	-	apolipoprotein N-acyltransferase
53	 69.69	0	54295..55221	-	308	16124309	-	CC_0053	-	CBS domain-containing protein
54	 64.35	0	55230..55703	-	157	16124310	-	CC_0054	-	hypothetical protein
55	 69.37	0	55723..56646	-	307	16124311	-	CC_0055	-	phosphate starvation-inducible protein PhoH, putative
56	 63.24	-1	58201..58608	-	135	16124312	-	CC_0057	-	ferric uptake regulation protein
57	 68.87	0	58654..59106	-	150	16124313	-	CC_0058	-	ribosomal-protein-alanine acetyltransferase, putative
58	 72.01	+1	59115..59750	-	211	16124314	-	CC_0059	-	glycoprotease family protein
59	 69.35	0	59754..60386	-	210	16124315	-	CC_0060	-	hypothetical protein
60	 64.46	0	60534..61121	-	195	16124316	-	CC_0061	-	hypothetical protein
61	 64.00	0	61191..61865	-	224	16124317	-	CC_0062	-	NifU-like domain-containing protein
62	 63.83	-1	61849..63153	+	434	16124318	-	CC_0063	-	cytochrome P450 family protein
63	 67.83	0	63327..64361	-	344	16124319	-	CC_0064	-	tryptophanyl-tRNA synthetase
64	 70.05	0	64529..66181	-	550	16124320	-	CC_0065	-	MviN family protein
65	 69.06	0	66331..68127	-	598	16124321	-	CC_0066	-	methyl-accepting chemotaxis protein McpQ
66	 65.49	0	68289..69050	-	253	16124322	-	CC_0067	-	hypothetical protein
67	 72.90	+1	69120..69488	-	122	16124323	-	CC_0068	-	Rieske 2Fe-2S family ferredoxin
68	 69.15	0	69493..69774	-	93	16124324	-	CC_0069	-	hypothetical protein
69	 74.00	+2	69794..70789	-	331	16124325	gpsA	CC_0070	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
70	 71.92	+1	70801..71904	-	367	16124326	-	CC_0071	-	peptidase M22 family protein
71	 72.14	+1	71977..72945	+	322	16124327	-	CC_0072	-	porphobilinogen deaminase
72	 71.71	+1	72929..73681	-	250	16124328	-	CC_0073	-	hypothetical protein
73	 74.43	+2	73662..74576	+	304	16124329	-	CC_0074	-	hypothetical protein
74	 73.18	+1	74573..76108	+	511	16124330	-	CC_0075	-	hypothetical protein
75	 66.90	0	76477..78606	-	709	16124331	-	CC_0076	-	fatty oxidation complex, alpha subunit
76	 68.33	0	78703..79908	-	401	16124332	-	CC_0077	-	acetyl-CoA acetyltransferase
77	 69.53	0	79975..80358	-	127	16124333	-	CC_0078	-	hypothetical protein
78	 63.18	-1	80355..81530	-	391	16124334	-	CC_0079	-	acyl-CoA dehydrogenase, long-chain specific
79	 66.00	0	81533..83326	-	597	16124335	-	CC_0080	-	acyl-CoA dehydrogenase family protein
80	 67.71	0	83414..83893	-	159	16124336	-	CC_0081	-	transcriptional regulator, putative
81	 72.12	+1	84087..84728	+	213	16124337	-	CC_0082	-	hypothetical protein
82	 68.10	0	84763..84972	-	69	16124338	-	CC_0083	-	hypothetical protein
83	 66.31	0	85222..86880	-	552	16124339	lysK	CC_0084	-	lysyl-tRNA synthetase
84	 70.27	0	87043..88680	-	545	16124340	-	CC_0085	-	phosphoglucomutase
85	 68.81	0	89053..90642	+	529	16124341	purH	CC_0086	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
86	 69.43	0	90655..91413	+	252	16124342	-	CC_0087	-	hypothetical protein
87	 66.07	0	91467..96290	-	1607	16124343	-	CC_0088	-	hypothetical protein
88	 62.85	-1	96628..97650	-	340	16124344	-	CC_0089	-	hypothetical protein
89	 66.92	0	97835..99385	+	516	16124345	-	CC_0090	-	hypothetical protein
90	 67.41	0	99466..101895	-	809	16124346	-	CC_0091	-	sensory box/GGDEF family protein
91	 67.38	0	101960..102943	-	327	16124347	-	CC_0092	-	UDP-glucose 4-epimerase
92	 68.46	0	103149..104042	-	297	16124348	-	CC_0093	-	integral membrane protein
93	 69.36	0	104039..104929	-	296	16124349	-	CC_0094	-	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
94	 68.14	0	105310..106260	-	316	16124350	-	CC_0095	-	WecB/TagA/CpsF family protein
95	 69.47	0	106334..107332	-	332	16124351	-	CC_0096	-	alcohol dehydrogenase, zinc-containing
96	 73.49	+1	107402..108280	+	292	16124352	-	CC_0097	-	asparaginase family protein
97	 69.28	0	108334..108792	+	152	16124353	-	CC_0098	-	hypothetical protein
98	 69.87	0	108931..109242	+	103	16124354	-	CC_0099	-	hypothetical protein
99	 73.83	+1	109239..110969	-	576	16124355	-	CC_0100	-	hypothetical protein
100	 69.16	0	110979..111659	-	226	16124356	-	CC_0101	-	ribulose-phosphate 3-epimerase
67.28	MEAN

3.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.