IslandPathversion 1.0

IslandPath Analysis: Enterobacter sp. 638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.36 STD DEV: 4.36
Enterobacter sp. 638, complete genome - 1..4518712
4115 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.65	0	518..1969	+	483	146309668	-	Ent638_0001	-	chromosomal replication initiator protein DnaA
2	 53.22	0	1974..3074	+	366	146309669	-	Ent638_0002	-	DNA polymerase III subunit beta
3	 55.03	0	3229..4302	+	357	146309670	recF	Ent638_0003	-	recombination protein F
4	 54.58	0	4331..6745	+	804	146309671	gyrB	Ent638_0004	-	DNA gyrase subunit B
5	 53.26	0	6908..7720	+	270	146309672	-	Ent638_0005	-	sugar phosphatase
6	 55.51	0	7946..8635	+	229	146309673	-	Ent638_0006	-	GntR family transcriptional regulator
7	 58.70	+1	8632..9510	+	292	146309674	-	Ent638_0007	-	2-keto-3-deoxygalactonate kinase
8	 58.74	+1	9494..10111	+	205	146309675	-	Ent638_0008	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
9	 55.44	0	10108..11256	+	382	146309676	-	Ent638_0009	-	galactonate dehydratase
10	 56.38	0	11476..12768	+	430	146309677	-	Ent638_0010	-	d-galactonate transporter
11	 56.48	0	12820..14046	+	408	146309678	-	Ent638_0011	-	putative ATP/GTP-binding protein
12	 54.95	0	14047..14379	-	110	146309679	-	Ent638_0012	-	hypothetical protein
13	 49.88	0	14693..15103	+	136	146309680	-	Ent638_0013	-	heat shock protein IbpA
14	 54.08	0	15236..15664	+	142	146309681	-	Ent638_0014	-	heat shock chaperone IbpB
15	 57.40	0	15829..17490	+	553	146309682	-	Ent638_0015	-	hypothetical protein
16	 53.95	0	17458..18204	-	248	146309683	-	Ent638_0016	-	GntR family transcriptional regulator
17	 54.55	0	18425..20041	+	538	146309684	-	Ent638_0017	-	PTS system, alpha-glucoside-specific IIBC subunit
18	 53.59	0	20038..21360	+	440	146309685	-	Ent638_0018	-	glycoside hydrolase family protein
19	 59.48	+1	21454..21801	+	115	146309686	-	Ent638_0019	-	hypothetical protein
20	 57.14	0	21791..22147	+	118	146309687	-	Ent638_0020	-	hypothetical protein
21	 58.08	+1	22213..23517	-	434	146309688	-	Ent638_0021	-	D-serine dehydratase
22	 55.21	0	23539..24699	+	386	146309689	-	Ent638_0022	-	hypothetical protein
23	 59.07	+1	24602..25786	-	394	146309690	emrD	Ent638_0023	-	multidrug resistance protein D
24	 56.15	0	25981..26427	-	148	146309691	-	Ent638_0024	-	GCN5-related N-acetyltransferase
25	 56.96	0	27434..29122	+	562	146309692	-	Ent638_0025	-	acetolactate synthase catalytic subunit
26	 52.78	0	29126..29413	+	95	146309693	-	Ent638_0026	-	acetolactate synthase 1 regulatory subunit
27	 60.94	+1	29486..30079	+	197	146309694	-	Ent638_0027	-	DNA-binding transcriptional activator UhpA
28	 62.27	+2	30076..31575	+	499	146309695	-	Ent638_0028	-	sensory histidine kinase UhpB
29	 61.47	+1	31585..32913	+	442	146309696	-	Ent638_0029	-	regulatory protein UhpC
30	 56.61	0	33056..34447	+	463	146309697	uhpT	Ent638_0030	-	sugar phosphate antiporter
31	 53.42	0	34638..35090	+	150	146309698	-	Ent638_0031	-	hypothetical protein
32	 57.18	0	35262..36452	+	396	146309699	nepI	Ent638_0032	-	ribonucleoside transporter
33	 55.85	0	36571..37476	-	301	146309700	-	Ent638_0033	-	carboxylate/amino acid/amine transporter
34	 54.55	0	37732..39117	-	461	146309701	-	Ent638_0034	-	putative maltoporin
35	 52.29	0	39271..39576	-	101	146309702	-	Ent638_0035	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
36	 52.41	0	39580..40968	-	462	146309703	-	Ent638_0036	-	Beta-glucosidase
37	 55.88	0	40986..42311	-	441	146309704	-	Ent638_0037	-	PTS system lactose/cellobiose family IIC subunit
38	 51.11	0	42324..42638	-	104	146309705	-	Ent638_0038	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
39	 52.68	0	42932..43882	+	316	146309706	-	Ent638_0039	-	LacI family transcription regulator
40	 47.14	-1	43910..44206	-	98	146309707	-	Ent638_0040	-	hypothetical protein
41	 53.33	0	44460..44879	+	139	146309708	-	Ent638_0041	-	GCN5-related N-acetyltransferase
42	 58.64	+1	44876..45535	-	219	146309709	-	Ent638_0042	-	TetR family transcriptional regulator
43	 58.35	+1	45614..47128	+	504	146309710	-	Ent638_0043	-	EmrB/QacA family drug resistance transporter
44	 56.17	0	47218..47979	+	253	146309711	-	Ent638_0044	-	hypothetical protein
45	 55.87	0	47966..49012	+	348	146309712	-	Ent638_0045	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada
46	 54.06	0	49115..49915	+	266	146309713	-	Ent638_0046	-	cytoplasmic membrane lipoprotein-28
47	 50.34	0	49958..50986	-	342	146309714	-	Ent638_0047	-	putative signal peptide protein
48	 58.77	+1	50983..52185	-	400	146309715	-	Ent638_0048	-	major facilitator transporter
49	 55.86	0	52394..53281	+	295	146309716	-	Ent638_0049	-	LysR family transcriptional regulator
50	 53.08	0	53377..54156	+	259	146309717	-	Ent638_0050	-	hypothetical protein
51	 55.35	0	54182..55153	+	323	146309718	-	Ent638_0051	-	transcriptional regulator
52	 52.72	0	55318..57024	+	568	146309719	-	Ent638_0052	-	polypeptide-transport-associated domain-containing protein
53	 58.53	+1	57040..68943	+	3967	146309720	-	Ent638_0053	-	filamentous haemagglutinin outer membrane protein
54	 51.54	0	69762..71744	+	660	146309721	-	Ent638_0054	-	hypothetical protein
55	 38.95	-2	72536..72802	+	88	146309722	-	Ent638_0055	-	hypothetical protein
56	 34.25	-2	73094..73531	+	145	146309723	-	Ent638_0056	-	hypothetical protein
57	 53.64	0	73961..75349	+	462	146309724	-	Ent638_0057	-	hypothetical protein
58	 54.79	0	75848..76933	+	361	146309725	-	Ent638_0058	-	putative hemagglutinin-related protein
59	 38.76	-2	76930..77316	+	128	146309726	-	Ent638_0059	-	hypothetical protein
60	 49.36	0	77566..78108	+	180	146309727	-	Ent638_0060	-	integrase catalytic subunit
61	 37.27	-2	78621..79052	+	143	146309728	-	Ent638_0061	-	hypothetical protein
62	 57.29	0	79393..80352	-	319	146309729	-	Ent638_0062	-	hypothetical protein
63	 53.04	0	80515..80925	-	136	146309730	-	Ent638_0063	-	transthyretin
64	 56.10	0	81023..81751	-	242	146309731	-	Ent638_0064	-	MerR family transcriptional regulator
65	 58.48	+1	81931..82455	+	174	146309732	-	Ent638_0065	-	outer membrane lipoprotein Blc
66	 57.56	0	82549..83547	+	332	146309733	-	Ent638_0066	-	hypothetical protein
67	 55.33	0	83947..84237	-	96	146309734	-	Ent638_0067	-	hypothetical protein
68	 40.30	-2	84374..84574	+	66	146309735	-	Ent638_0068	-	hypothetical protein
69	 29.84	-2	84578..85837	+	419	146309736	-	Ent638_0069	-	hypothetical protein
70	 57.71	0	86293..87687	+	464	146309737	-	Ent638_0070	-	putative transporter
71	 56.92	0	87699..90017	+	772	146309738	-	Ent638_0071	-	alpha-xylosidase YicI
72	 58.71	+1	90211..91932	-	573	146309739	-	Ent638_0072	-	AsmA family protein
73	 58.85	+1	92053..93447	-	464	146309740	-	Ent638_0073	-	uracil-xanthine permease
74	 52.12	0	93676..94218	-	180	146309741	-	Ent638_0074	-	fimbrial protein
75	 44.27	-2	94256..94840	-	194	146309742	-	Ent638_0075	-	fimbrial protein
76	 46.33	-1	94908..95438	-	176	146309743	-	Ent638_0076	-	hypothetical protein
77	 46.86	-1	95477..96001	-	174	146309744	-	Ent638_0077	-	hypothetical protein
78	 49.43	0	96042..96563	-	173	146309745	-	Ent638_0078	-	fimbrial protein
79	 48.66	-1	96599..97120	-	173	146309746	-	Ent638_0079	-	fimbrial protein
80	 47.24	-1	97157..97681	-	174	146309747	-	Ent638_0080	-	hypothetical protein
81	 45.66	-1	97717..98235	-	172	146309748	-	Ent638_0081	-	hypothetical protein
82	 50.09	0	98262..98810	-	182	146309749	-	Ent638_0082	-	fimbrial protein
83	 46.38	-1	98893..99858	-	321	146309750	-	Ent638_0083	-	fimbrial protein
84	 51.61	0	99863..102319	-	818	146309751	-	Ent638_0084	-	fimbrial biogenesis outer membrane usher protein
85	 43.40	-2	102336..103040	-	234	146309752	-	Ent638_0085	-	pili assembly chaperone
86	 42.18	-2	103084..103614	-	176	146309753	-	Ent638_0086	-	fimbrial protein
87	 55.00	0	103833..105914	-	693	146309754	-	Ent638_0087	-	ATP-dependent DNA helicase RecG
88	 53.48	0	105918..106607	-	229	146309755	-	Ent638_0088	-	tRNA guanosine-2'-O-methyltransferase
89	 52.70	0	106612..108723	-	703	146309756	-	Ent638_0089	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
90	 55.07	0	108743..109018	-	91	146309757	-	Ent638_0090	-	DNA-directed RNA polymerase, omega subunit
91	 47.76	-1	109073..109696	-	207	146309758	gmk	Ent638_0091	-	guanylate kinase
92	 49.61	0	109948..111618	+	556	146309759	ligB	Ent638_0092	-	NAD-dependent DNA ligase LigB
93	 46.34	-1	111615..113267	-	550	146309760	-	Ent638_0093	-	sulfatase
94	 52.75	0	113383..114000	-	205	146309761	-	Ent638_0094	-	hypothetical protein
95	 52.20	0	114319..115182	-	287	146309762	-	Ent638_0095	-	hypothetical protein
96	 55.37	0	115307..116023	+	238	146309763	rph	Ent638_0096	-	ribonuclease PH
97	 52.18	0	116084..116725	+	213	146309764	pyrE	Ent638_0097	-	orotate phosphoribosyltransferase
98	 49.58	0	116770..117366	-	198	146309765	slmA	Ent638_0098	-	nucleoid occlusion protein
99	 57.08	0	117484..117942	-	152	146309766	dut	Ent638_0099	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
100	 54.65	0	117920..119134	-	404	146309767	-	Ent638_0100	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
53.36	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.