IslandPath Analysis: Thermotoga lettingae TMO



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.58   STD DEV: 2.46
Thermotoga lettingae TMO, complete genome - 1..2135342
2040 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.10	0	137..1471	+	444	157362871	-	Tlet_0001	-	chromosomal replication initiator protein DnaA
2	 41.15	+1	1440..2450	-	336	157362872	-	Tlet_0002	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
3	 38.08	0	2447..3373	-	308	157362873	-	Tlet_0003	-	tRNA (guanine-N(7)-)-methyltransferase
4	 38.61	0	3370..4524	-	384	157362874	-	Tlet_0004	-	tetratricopeptide TPR_3
5	 40.03	0	4521..6044	-	507	157362875	-	Tlet_0005	-	carbohydrate kinase, YjeF related protein
6	 37.23	0	6049..6510	-	153	157362876	-	Tlet_0006	-	lytic transglycosylase catalytic
7	 36.79	0	6572..7294	-	240	157362877	-	Tlet_0007	-	peptidase A24A domain-containing protein
8	 38.18	0	7279..8352	-	357	157362878	-	Tlet_0008	-	TPR repeat-containing protein
9	 37.08	0	8420..9433	-	337	157362879	-	Tlet_0009	-	hypothetical protein
10	 38.77	0	9430..10440	-	336	157362880	-	Tlet_0010	-	glycosyl transferase group 1
11	 39.20	0	10592..12943	-	783	157362881	-	Tlet_0011	-	ATP-dependent DNA helicase RecG
12	 37.82	0	13070..13582	-	170	157362882	-	Tlet_0012	-	hypoxanthine phosphoribosyltransferase
13	 38.23	0	13596..14228	-	210	157362883	-	Tlet_0013	-	hypothetical protein
14	 40.65	0	14513..16288	+	591	157362884	-	Tlet_0014	-	chaperone protein DnaK
15	 41.89	+1	16313..16756	+	147	157362885	-	Tlet_0015	-	heat shock protein Hsp20
16	 38.74	0	16802..19021	+	739	157362886	-	Tlet_0016	-	ATPase
17	 39.00	0	19039..20043	-	334	157362887	-	Tlet_0017	-	alanine racemase
18	 37.36	0	20320..20841	-	173	157362888	-	Tlet_0018	-	putative HNH endonuclease
19	 40.61	0	21309..22724	+	471	157362889	-	Tlet_0019	-	L-fucose isomerase _2 domain-containing protein
20	 36.87	0	22890..23681	+	263	157362890	-	Tlet_0020	-	extracellular solute-binding protein
21	 39.78	0	23739..24467	+	242	157362891	-	Tlet_0021	-	ABC transporter related
22	 36.17	0	24493..25161	+	222	157362892	-	Tlet_0022	-	polar amino acid ABC transporter, inner membrane subunit
23	 35.70	-1	25161..25835	+	224	157362893	-	Tlet_0023	-	polar amino acid ABC transporter, inner membrane subunit
24	 35.70	-1	25816..27039	+	407	157362894	-	Tlet_0024	-	aminotransferase class I and II
25	 41.28	+1	27053..27958	+	301	157362895	-	Tlet_0025	-	dihydrodipicolinate synthetase
26	 37.55	0	27962..28792	-	276	157362896	-	Tlet_0026	-	phage integrase family protein
27	 36.54	0	29172..30170	+	332	157362897	-	Tlet_0027	-	response regulator receiver modulated metal dependent phosphohydrolase
28	 36.83	0	30205..30690	+	161	157362898	-	Tlet_0028	-	hypothetical protein
29	 40.88	0	30707..31951	-	414	157362899	-	Tlet_0029	-	PKD domain-containing protein
30	 34.60	-1	32309..32782	-	157	157362900	-	Tlet_0030	-	flavodoxin-like protein
31	 36.59	0	32873..33976	+	367	157362901	-	Tlet_0031	-	major facilitator transporter
32	 38.19	0	33981..35195	-	404	157362902	-	Tlet_0032	-	binding-protein-dependent transport systems inner membrane component
33	 36.33	0	35192..36058	-	288	157362903	-	Tlet_0033	-	binding-protein-dependent transport systems inner membrane component
34	 41.48	+1	36107..37321	-	404	157362904	-	Tlet_0034	-	extracellular solute-binding protein
35	 37.13	0	37324..38694	-	456	157362905	-	Tlet_0035	-	glycoside hydrolase family 3 protein
36	 38.30	0	38681..39748	-	355	157362906	-	Tlet_0036	-	regulatory protein ArsR
37	 35.61	-1	40183..40842	-	219	157362907	-	Tlet_0037	-	GntR family transcriptional regulator
38	 35.40	-1	42387..42821	-	144	157362908	-	Tlet_0039	-	putative tricarboxylate transport protein TctB
39	 39.51	0	42867..43838	-	323	157362909	-	Tlet_0040	-	hypothetical protein
40	 39.66	0	43996..44880	+	294	157362910	-	Tlet_0041	-	putative methylisocitrate lyase
41	 37.18	0	44919..46712	-	597	157362911	-	Tlet_0042	-	sulfatase
42	 38.55	0	46805..47551	+	248	157362912	-	Tlet_0043	-	LmbE family protein
43	 36.96	0	47565..48530	+	321	157362913	-	Tlet_0044	-	ATPase BadF/BadG/BcrA/BcrD type
44	 38.68	0	48527..49780	+	417	157362914	-	Tlet_0045	-	glycoside hydrolase family protein
45	 40.24	0	49792..51108	+	438	157362915	-	Tlet_0046	-	major facilitator transporter
46	 39.46	0	51105..51626	+	173	157362916	-	Tlet_0047	-	putative methyltransferase
47	 38.67	0	51628..53070	-	480	157362917	-	Tlet_0048	-	carbohydrate kinase FGGY
48	 38.97	0	53101..54075	-	324	157362918	-	Tlet_0049	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
49	 38.67	0	54098..54940	-	280	157362919	-	Tlet_0050	-	RpiR family transcriptional regulator
50	 39.15	0	55029..55784	-	251	157362920	-	Tlet_0051	-	short-chain dehydrogenase/reductase SDR
51	 42.06	+1	55797..57080	-	427	157362921	-	Tlet_0052	-	TRAP dicarboxylate transporter, DctM subunit
52	 35.34	-1	57077..57574	-	165	157362922	-	Tlet_0053	-	tripartite ATP-independent periplasmic transporter DctQ
53	 40.53	0	57663..58676	-	337	157362923	-	Tlet_0054	-	TRAP dicarboxylate transporter- DctP subunit
54	 34.84	-1	58811..59737	-	308	157362924	-	Tlet_0055	-	hypothetical protein
55	 38.82	0	59744..62113	-	789	157362925	-	Tlet_0056	-	phenylalanyl-tRNA synthetase, beta subunit
56	 40.70	0	62128..63132	-	334	157362926	-	Tlet_0057	-	phenylalanyl-tRNA synthetase, alpha subunit
57	 38.37	0	63065..64096	-	343	157362927	-	Tlet_0058	-	radical SAM domain-containing protein
58	 39.89	0	64098..64814	-	238	157362928	-	Tlet_0059	-	ribonuclease III
59	 41.90	+1	64811..66700	-	629	157362929	-	Tlet_0060	-	transketolase
60	 37.39	0	66724..66945	-	73	157362930	-	Tlet_0061	-	hypothetical protein
61	 39.80	0	66929..67747	-	272	157362931	-	Tlet_0062	-	PSP1 domain-containing protein
62	 38.47	0	67760..68635	-	291	157362932	-	Tlet_0063	-	hypothetical protein
63	 35.31	-1	68643..69098	-	151	157362933	-	Tlet_0064	-	hypothetical protein
64	 41.31	+1	69103..70143	-	346	157362934	-	Tlet_0065	-	aIF-2BI family translation initiation factor
65	 38.18	0	70140..71171	-	343	157362935	-	Tlet_0066	-	PpiC-type peptidyl-prolyl cis-trans isomerase
66	 40.67	0	71168..71944	-	258	157362936	-	Tlet_0067	-	MazG family protein
67	 38.58	0	71946..72593	-	215	157362937	-	Tlet_0068	-	hypothetical protein
68	 41.35	+1	72595..73530	-	311	157362938	-	Tlet_0069	-	phosphate transporter
69	 35.29	-1	73653..74264	+	203	157362939	-	Tlet_0070	-	AroM family protein
70	 40.35	0	74278..75816	+	512	157362940	-	Tlet_0071	-	extracellular solute-binding protein
71	 39.56	0	75862..76824	+	320	157362941	-	Tlet_0072	-	nickel-transporting ATPase
72	 41.30	+1	76821..77636	+	271	157362942	-	Tlet_0073	-	binding-protein-dependent transport systems inner membrane component
73	 41.69	+1	77645..78817	+	390	157362943	-	Tlet_0074	-	amidohydrolase
74	 40.71	0	78814..79776	+	320	157362944	-	Tlet_0075	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
75	 39.72	0	79778..80716	+	312	157362945	-	Tlet_0076	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
76	 40.86	0	80722..81651	+	309	157362946	-	Tlet_0077	-	hypothetical protein
77	 41.58	+1	81648..82205	+	185	157362947	-	Tlet_0078	-	XRE family transcriptional regulator
78	 34.92	-1	82250..82627	+	125	157362948	-	Tlet_0079	-	flagellar basal-body rod protein FlgB
79	 40.34	0	82629..83042	+	137	157362949	-	Tlet_0080	-	flagellar basal-body rod protein FlgC
80	 33.67	-1	83046..83339	+	97	157362950	-	Tlet_0081	-	flagellar hook-basal body complex subunit FliE
81	 36.59	0	83334..84623	-	429	157362951	-	Tlet_0082	-	glycosyl transferase group 1
82	 39.01	0	84620..85447	-	275	157362952	-	Tlet_0083	-	RpiR family transcriptional regulator
83	 40.34	0	85444..86628	-	394	157362953	-	Tlet_0084	-	glycosyl transferase family protein
84	 36.13	0	86625..89165	-	846	157362954	-	Tlet_0085	-	glycoside hydrolase family protein
85	 38.36	0	89162..90235	-	357	157362955	-	Tlet_0086	-	ABC transporter related
86	 39.75	0	90249..91043	-	264	157362956	-	Tlet_0087	-	binding-protein-dependent transport systems inner membrane component
87	 36.49	0	91040..91894	-	284	157362957	-	Tlet_0088	-	binding-protein-dependent transport systems inner membrane component
88	 42.28	+1	91945..93207	-	420	157362958	-	Tlet_0089	-	extracellular solute-binding protein
89	 35.11	-1	94172..94678	+	168	157362959	-	Tlet_0090	-	hypothetical protein
90	 37.44	0	96217..96654	-	145	157362960	-	Tlet_0092	-	hypothetical protein
91	 37.88	0	96651..97046	-	131	157362961	-	Tlet_0093	-	XRE family transcriptional regulator
92	 32.50	-2	97060..97419	-	119	157362962	-	Tlet_0094	-	hypothetical protein
93	 32.86	-2	97766..97975	+	69	157362963	-	Tlet_0095	-	hypothetical protein
94	 33.00	-2	97994..98293	+	99	157362964	-	Tlet_0096	-	hypothetical protein
95	 35.25	-1	98639..100621	+	660	157362965	-	Tlet_0097	-	hypothetical protein
96	 33.81	-1	100614..101240	+	208	157362966	-	Tlet_0098	-	hypothetical protein
97	 31.11	-2	101230..101814	+	194	157362967	-	Tlet_0099	-	hypothetical protein
98	 38.75	0	101811..102659	+	282	157362968	-	Tlet_0100	-	hypothetical protein
99	 35.23	-1	103920..104603	-	227	157362969	-	Tlet_0102	-	hypothetical protein
100	 38.15	0	104862..105692	-	276	157362970	-	Tlet_0103	-	RpiR family transcriptional regulator
38.58	MEAN

2.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.