IslandPath Analysis: Bdellovibrio bacteriovorus HD100



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.40   STD DEV: 3.19
Bdellovibrio bacteriovorus HD100, complete genome - 1..3782950
3587 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.45	0	1..1416	+	471	42521651	dnaA	Bd0001	-	chromosomal replication initiator protein dnaA
2	 43.18	-2	1649..2755	+	368	42521652	dnaN	Bd0002	-	DNA polymerase III, beta subunit
3	 47.02	-1	2755..3879	+	374	42521653	-	Bd0003	-	DNA repair and genetic recombination protein
4	 48.04	0	3966..6386	+	806	42521654	-	Bd0004	-	DNA gyrase subunit B
5	 50.72	0	6410..8893	+	827	42521655	gyrA	Bd0005	-	DNA gyrase subunit A
6	 48.50	0	8895..9692	+	265	42521656	-	Bd0006	-	hypothetical protein
7	 43.04	-2	9692..9928	+	78	42521657	-	Bd0007	-	hypothetical protein
8	 44.54	-1	9925..10281	+	118	42521658	-	Bd0008	-	hypothetical protein
9	 48.12	0	10271..10960	+	229	42521659	atpB	Bd0009	-	ATP synthase F0, A subunit
10	 45.60	-1	10993..11310	+	105	42521660	atpE/H	Bd0010	-	ATP synthase subunit C
11	 47.84	0	11409..12332	-	307	42521661	-	Bd0011	-	hypothetical protein
12	 48.67	0	12474..12962	+	162	42521662	-	Bd0012	-	hypothetical protein
13	 46.83	-1	13006..13983	+	325	42521663	-	Bd0013	-	putative transcriptional regulator
14	 50.29	0	14017..15384	-	455	42521664	pmm	Bd0014	-	hypothetical protein
15	 51.10	0	15432..16382	-	316	42521665	pdxA	Bd0015	-	pyridoxal phosphate biosynthetic protein
16	 48.27	0	16375..17298	-	307	42521666	surA	Bd0017	-	survival protein SurA precursor
17	 50.57	0	17312..18280	-	322	42521667	ppiC	Bd0018	-	parvulin-like peptidyl-prolyl isomerase
18	 46.42	-1	18293..19102	-	269	42521668	ppiD	Bd0019	-	hypothetical protein
19	 49.85	0	19150..19815	-	221	42521669	-	Bd0020	-	putative lipoprotein
20	 51.50	0	19818..20786	-	322	42521670	etfA	Bd0021	-	electron transfer flavoprotein subunit alpha
21	 48.32	0	20797..21570	-	257	42521671	etfB	Bd0022	-	electron transfer flavoprotein beta-subunit
22	 50.00	0	21751..22410	+	219	42521672	sdhC	Bd0024	-	putative cytochrome B subunit
23	 53.00	0	22422..24338	+	638	42521673	sdhA	Bd0025	-	succinate dehydrogenase flavoprotein subunit
24	 52.85	0	24349..25137	+	262	42521674	sdhB	Bd0026	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
25	 44.44	-1	25438..25689	+	83	42521675	-	Bd0027	-	hypothetical protein
26	 40.86	-2	25701..25793	+	30	42521676	-	Bd0028	-	hypothetical protein
27	 49.76	0	25900..27543	+	547	42521677	-	Bd0029	-	subtilase
28	 50.40	0	27613..28497	-	294	42521678	pcbD	Bd0030	-	alpha/beta fold family hydrolase
29	 51.88	0	28509..29198	-	229	42521679	-	Bd0031	-	hypothetical protein
30	 42.92	-2	29347..29805	+	152	42521680	rpsF	Bd0032	-	30S ribosomal protein S6
31	 48.93	0	29825..30715	+	296	42521681	-	Bd0033	-	hypothetical protein
32	 43.47	-2	30732..31175	+	147	42521682	rplI	Bd0034	-	50S ribosomal protein L9
33	 49.89	0	31347..32222	+	291	42521683	-	Bd0035	-	trypsin
34	 52.45	0	32299..32502	-	67	42521684	-	Bd0036	-	hypothetical protein
35	 54.15	+1	32617..33543	-	308	42521685	-	Bd0037	-	putative oxidoreductase
36	 51.06	0	33558..34973	-	471	42521686	dnaB	Bd0038	-	hypothetical protein
37	 40.33	-2	35076..35375	-	99	42521687	fis	Bd0039	-	site-specific DNA inversion stimulation factor
38	 43.04	-2	35411..36049	-	212	42521688	-	Bd0040	-	radical activating enzyme
39	 51.29	0	36142..38535	+	797	42521689	ftsK	Bd0041	-	cell division protein FtsK
40	 44.33	-1	38608..39180	+	190	42521690	-	Bd0042	-	hypothetical protein
41	 48.21	0	39184..40050	+	288	42521691	-	Bd0043	-	hypothetical protein
42	 57.41	+2	40034..40249	+	71	42521692	-	Bd0044	-	hypothetical protein
43	 54.66	+1	40246..41103	+	285	42521693	dapF	Bd0045	-	hypothetical protein
44	 50.45	0	41100..41981	+	293	42521694	dapA	Bd0046	-	dihydrodipicolinate synthase
45	 50.58	0	41978..42667	+	229	42521695	dapB	Bd0047	-	hypothetical protein
46	 52.55	0	42664..43173	+	169	42521696	-	Bd0048	-	hypothetical protein
47	 46.91	-1	43235..43882	+	215	42521697	talC	Bd0049	-	putative translaldolase
48	 52.03	0	43882..44325	+	147	42521698	-	Bd0050	-	hypothetical protein
49	 51.82	0	44375..46489	+	704	42521699	-	Bd0051	-	hypothetical protein
50	 52.35	0	46473..47729	-	418	42521700	murD	Bd0052	-	hypothetical protein
51	 49.86	0	47846..49267	+	473	42521701	-	Bd0054	-	hypothetical protein
52	 41.03	-2	49361..49555	+	64	42521702	-	Bd0055	-	hypothetical protein
53	 53.85	+1	49662..50582	+	306	42521703	-	Bd0056	-	hypothetical protein
54	 53.19	0	50579..52633	-	684	42521704	lig	Bd0057	-	DNA ligase
55	 50.35	0	52687..52968	+	93	42521705	gatC	Bd0058	-	glutamyl-tRNA(Gln) amidotransferase (subunit C)
56	 53.02	0	52978..54450	+	490	42521706	gatA	Bd0059	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
57	 50.21	0	54440..55873	+	477	42521707	gatB	Bd0060	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
58	 51.37	0	55889..56803	+	304	42521708	-	Bd0061	-	hypothetical protein
59	 47.42	0	56811..57236	+	141	42521709	-	Bd0062	-	hypothetical protein
60	 53.33	0	57326..58705	+	459	42521710	-	Bd0063	-	hypothetical protein
61	 50.68	0	58773..59141	-	122	42521711	-	Bd0064	-	hypothetical protein
62	 51.55	0	59532..61277	+	581	42521712	rho	Bd0065	-	transcription termination factor Rho
63	 51.30	0	61343..61804	-	153	42521713	-	Bd0067	-	hypothetical protein
64	 38.62	-2	62139..62384	+	81	42521714	rpmE	Bd0068	-	50S ribosomal protein L31
65	 50.65	0	62532..63605	+	357	42521715	prfA	Bd0069	-	peptide chain release factor RF-1
66	 50.11	0	63609..64490	+	293	42521716	hemK	Bd0070	-	HemK protein
67	 53.41	0	64492..65736	+	414	42521717	murA	Bd0071	-	UDP-N-acetylglucosamine enolpyruvyl transferase
68	 51.07	0	65780..66574	-	264	42521718	-	Bd0072	-	hypothetical protein
69	 49.50	0	66708..67610	-	300	42521719	-	Bd0073	-	polysaccharide deacetylase-related protein
70	 46.37	-1	67752..68150	-	132	42521720	-	Bd0074	-	hypothetical protein
71	 52.04	0	68363..71308	+	981	42521721	-	Bd0075	-	hypothetical protein
72	 49.51	0	71336..71644	+	102	42521722	-	Bd0076	-	hypothetical protein
73	 50.15	0	71677..72972	+	431	42521723	serS	Bd0077	-	seryl-tRNA synthetase
74	 48.95	0	73283..74095	+	270	42521724	-	Bd0078	-	hypothetical protein
75	 48.89	0	74102..74776	+	224	42521725	dedA	Bd0080	-	DedA protein
76	 48.26	0	74777..76726	-	649	42521726	cyaB	Bd0081	-	adenylate cyclase, putative
77	 52.92	0	76710..78767	-	685	42521727	-	Bd0082	-	hypothetical protein
78	 45.43	-1	78886..79290	+	134	42521728	-	Bd0083	-	hypothetical protein
79	 49.38	0	79300..80421	+	373	42521729	-	Bd0084	-	hypothetical protein
80	 48.72	0	80485..80952	+	155	42521730	-	Bd0085	-	cytidine/deoxycytidylate deaminase family protein
81	 51.08	0	80969..83047	+	692	42521731	-	Bd0086	-	hypothetical protein
82	 46.98	-1	83103..83615	+	170	42521732	-	Bd0087	-	GTP cyclohydrolase I
83	 46.15	-1	83846..84274	+	142	42521733	-	Bd0088	-	hypothetical protein
84	 51.34	0	84356..85216	+	286	42521734	-	Bd0089	-	hypothetical protein
85	 48.72	0	85438..85905	+	155	42521735	-	Bd0090	-	hypothetical protein
86	 42.64	-2	86377..86634	-	85	42521736	-	Bd0091	-	hypothetical protein
87	 48.87	0	86828..87535	+	235	42521737	-	Bd0092	-	putative cytochrome b
88	 49.03	0	87560..88075	+	171	42521738	-	Bd0093	-	hypothetical protein
89	 52.85	0	88127..88582	+	151	42521739	-	Bd0094	-	hypothetical protein
90	 48.97	0	88821..89933	+	370	42521740	-	Bd0095	-	hypothetical protein
91	 51.72	0	89941..90636	+	231	42521741	-	Bd0096	-	hypothetical protein
92	 45.21	-1	90797..91099	+	100	42521742	groES	Bd0097	-	chaperonin groES
93	 46.68	-1	91156..92796	+	546	42521743	groEL	Bd0099	-	60 kDa chaperonin
94	 51.10	0	92858..94444	-	528	42521744	-	Bd0100	-	hypothetical protein
95	 52.45	0	94522..95703	+	393	42521745	-	Bd0101	-	hypothetical protein
96	 48.35	0	95746..96138	+	130	42521746	cheY	Bd0102	-	chemotaxis response regulator
97	 49.81	0	96125..96385	+	86	42521747	-	Bd0103	-	hypothetical protein
98	 57.19	+2	96873..97178	-	101	42521748	-	Bd0108	-	hit locus orf4
99	 48.76	0	97194..98846	-	550	42521749	-	Bd0109	-	cell wall-associated protein precursor wapA
100	 49.32	0	98877..99752	-	291	42521750	TadB	Bd0110	-	hypothetical protein
50.40	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.