IslandPath Analysis: Vibrio vulnificus YJ016



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.10   STD DEV: 4.03
Vibrio vulnificus YJ016 chromosome II, complete sequence - 1..1857073
1696 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.44	0	192..2162	+	656	37675661	-	VVA0001	-	hypothetical protein
2	 47.86	0	2516..2983	-	155	37675662	-	VVA0002	-	hypothetical protein
3	 48.98	0	2983..3915	-	310	37675663	-	VVA0003	-	ABC-type oligopeptide transport system, ATPase component
4	 49.76	0	3918..4763	-	281	37675664	-	VVA0004	-	peptide ABC transporter, ATP-binding protein
5	 44.95	0	5114..5311	+	65	37675665	-	VVA0005	-	hypothetical protein
6	 49.55	0	5457..6560	+	367	37675666	-	VVA0006	-	GTP cyclohydrolase II
7	 44.97	0	6605..7360	-	251	37675667	-	VVA0007	-	hypothetical protein
8	 48.74	0	7436..9376	+	646	37675668	-	VVA0008	-	signal transduction histidine kinase
9	 44.76	0	9536..9745	+	69	37675669	-	VVA0009	-	hypothetical protein
10	 46.16	0	9876..10592	+	238	37675670	-	VVA0010	-	hypothetical protein
11	 48.78	0	10627..10872	-	81	37675671	-	VVA0011	-	hypothetical protein
12	 50.48	0	10912..11856	+	314	37675672	-	VVA0012	-	transcriptional regulator
13	 51.02	0	11896..12681	+	261	37675673	-	VVA0013	-	hypothetical protein
14	 52.16	+1	12692..13387	+	231	37675674	-	VVA0014	-	peptide ABC transporter ATPase
15	 51.97	+1	13375..14640	+	421	37675675	-	VVA0015	-	hypothetical protein
16	 50.45	0	14633..15403	+	256	37675676	-	VVA0016	-	hypothetical protein
17	 53.93	+1	15423..16757	+	444	37675677	-	VVA0017	-	hypothetical protein
18	 49.28	0	16758..17861	+	367	37675678	-	VVA0018	-	signal transduction protein
19	 50.84	0	17858..18628	+	256	37675679	-	VVA0019	-	response regulator
20	 54.55	+1	18446..18610	-	54	37675680	-	VVA0020	-	hypothetical protein
21	 49.46	0	18839..20500	-	553	37675681	-	VVA0021	-	methyl-accepting chemotaxis protein
22	 46.22	0	20714..21520	-	268	37675682	-	VVA0022	-	hypothetical protein
23	 49.66	0	21685..21831	-	48	37675683	-	VVA0023	-	hypothetical protein
24	 47.92	0	22128..23354	+	408	37675684	-	VVA0024	-	sodium/glutamate symporter
25	 40.85	-1	23325..23537	-	70	37675685	-	VVA0025	-	hypothetical protein
26	 47.11	0	23815..25041	+	408	37675686	-	VVA0026	-	sodium/glutamate symporter
27	 48.56	0	25197..26063	+	288	37675687	-	VVA0027	-	hypothetical protein
28	 46.07	0	26168..26968	-	266	37675688	nagB	VVA0028	-	glucosamine-6-phosphate deaminase
29	 44.93	0	27266..27541	+	91	37675689	-	VVA0029	-	hypothetical protein
30	 49.35	0	27604..29607	-	667	37675690	-	VVA0030	-	hypothetical protein
31	 47.93	0	29588..30628	-	346	37675691	-	VVA0031	-	glutathione synthetase
32	 44.44	0	30628..30987	-	119	37675692	-	VVA0032	-	hypothetical protein
33	 48.11	0	31137..32036	+	299	37675693	-	VVA0033	-	transcriptional regulator
34	 45.59	0	32170..32373	-	67	37675694	-	VVA0034	-	hypothetical protein
35	 52.56	+1	32578..32733	-	51	37675695	-	VVA0036	-	hypothetical protein
36	 49.31	0	32684..34129	+	481	37675696	-	VVA0035	-	adenosine deaminase
37	 50.00	0	34131..34616	+	161	37675697	-	VVA0037	-	methylated DNA-protein cysteine methyltransferase
38	 44.33	0	34799..35407	-	202	37675698	-	VVA0038	-	hypothetical protein
39	 46.46	0	35619..36014	+	131	37675699	-	VVA0039	-	hypothetical protein
40	 50.41	0	36093..37568	-	491	37675700	-	VVA0040	-	Na+/H+ antiporter NhaD
41	 47.90	0	37949..38998	-	349	37675701	-	VVA0041	-	hypothetical protein
42	 47.81	0	39187..39780	+	197	37675702	-	VVA0042	-	putative transcription regulator
43	 51.53	+1	39857..40708	+	283	37675703	-	VVA0043	-	hypothetical protein
44	 52.42	+1	40806..42665	-	619	37675704	-	VVA0044	-	chitinase
45	 47.94	0	42578..43426	-	282	37675705	-	VVA0045	-	chitinase
46	 45.45	0	43674..44399	-	241	37675706	-	VVA0046	-	hypothetical protein
47	 46.81	0	44399..44680	+	93	37675707	-	VVA0047	-	hypothetical protein
48	 47.70	0	44776..45687	-	303	37675708	-	VVA0048	-	pirin-related protein
49	 51.09	0	45801..46076	+	91	37675709	-	VVA0049	-	hypothetical protein
50	 45.03	0	46095..47291	-	398	37675710	-	VVA0050	-	GGDEF family protein
51	 47.82	0	47745..49553	-	602	37675711	-	VVA0051	-	hypothetical protein
52	 49.08	0	49708..51720	-	670	37675712	-	VVA0052	-	type II secretory pathway, pullulanase
53	 46.75	0	52115..53389	+	424	37675713	-	VVA0053	-	maltoporin
54	 49.42	0	53453..54316	+	287	37675714	-	VVA0054	-	hypothetical protein
55	 50.88	0	54432..57212	-	926	37675715	-	VVA0055	-	glycogen debranching enzyme
56	 48.52	0	57274..58452	-	392	37675716	malE	VVA0056	-	maltose ABC transporter periplasmic protein
57	 50.69	0	58679..60499	-	606	37675717	-	VVA0057	-	glycosidase
58	 49.83	0	60693..61874	+	393	37675718	-	VVA0058	-	hypothetical protein
59	 51.93	+1	61938..65546	-	1202	37675719	-	VVA0059	-	type II secretory pathway, pullulanase
60	 32.26	-2	66014..66199	+	61	37675720	-	VVA0060	-	hypothetical protein
61	 40.98	-1	66326..66835	+	169	37675721	-	VVA0061	-	hypothetical protein
62	 25.19	-2	66838..66972	+	44	37675722	-	VVA0062	-	hypothetical protein
63	 48.01	0	67248..69428	+	726	37675723	-	VVA0063	-	ornithine decarboxylase
64	 50.65	0	69494..70804	+	436	37675724	-	VVA0064	-	putrescine transporter
65	 50.86	0	71169..72041	+	290	37675725	-	VVA0065	-	putative pyridoxine kinase
66	 50.20	0	72095..73315	-	406	37675726	-	VVA0066	-	serine/threonine transporter SstT
67	 48.02	0	73598..74659	-	353	37675727	-	VVA0067	-	ribosome-associated GTPase
68	 51.78	+1	74965..75414	-	149	37675728	-	VVA0068	-	hypothetical protein
69	 49.55	0	75416..76075	-	219	37675729	-	VVA0069	-	Sco1-related protein
70	 50.68	0	76012..76455	-	147	37675730	-	VVA0070	-	hypothetical protein
71	 45.28	0	76455..76613	-	52	37675731	-	VVA0071	-	hypothetical protein
72	 47.25	0	76591..77610	-	339	37675732	-	VVA0072	-	hypothetical protein
73	 40.97	-1	77864..78007	-	47	37675733	-	VVA0073	-	hypothetical protein
74	 46.71	0	78037..79038	-	333	37675734	-	VVA0074	-	hypothetical protein
75	 50.54	0	79358..82066	-	902	37675735	-	VVA0076	-	transcriptional regulator MalT
76	 37.21	-2	82044..82172	+	42	37675736	-	VVA0075	-	hypothetical protein
77	 48.79	0	82553..85075	+	840	37675737	-	VVA0077	-	glucan phosphorylase
78	 51.54	+1	85188..87368	+	726	37675738	malQ	VVA0078	-	4-alpha-glucanotransferase
79	 50.92	0	87555..89783	+	742	37675739	-	VVA0079	-	glycogen branching enzyme
80	 48.80	0	89853..91856	+	667	37675740	-	VVA0080	-	methyl-accepting chemotaxis protein
81	 51.06	0	92110..93519	+	469	37675741	-	VVA0081	-	2-methylthioadenine synthetase
82	 50.34	0	93596..94183	-	195	37675742	-	VVA0082	-	putative threonine efflux protein
83	 48.88	0	94258..94746	+	162	37675743	-	VVA0083	-	transcriptional regulator
84	 50.67	0	94743..95930	-	395	37675744	-	VVA0084	-	hypothetical protein
85	 51.17	+1	96015..96653	-	212	37675745	-	VVA0085	-	pyrrolidone-carboxylate peptidase
86	 51.16	+1	97037..98242	+	401	37675746	-	VVA0086	-	hypothetical protein
87	 45.09	0	98351..99073	-	240	37675747	-	VVA0088	-	hypothetical protein
88	 44.44	0	98384..98563	+	59	37675748	-	VVA0087	-	hypothetical protein
89	 45.09	0	99376..102156	+	926	37675749	-	VVA0089	-	hypothetical protein
90	 51.47	+1	102278..102955	-	225	37675750	-	VVA0090	-	phosphoserine phosphatase
91	 49.41	0	103095..104717	+	540	37675751	-	VVA0091	-	methyl-accepting chemotaxis protein
92	 47.11	0	104836..105423	-	195	37675752	-	VVA0092	-	hypothetical protein
93	 52.38	+1	105673..107100	+	475	37675753	-	VVA0093	-	NAD-dependent aldehyde dehydrogenase
94	 50.70	0	107254..108111	+	285	37675754	-	VVA0094	-	putative glutathione S-transferase YghU
95	 40.21	-1	108108..108296	-	62	37675755	-	VVA0095	-	hypothetical protein
96	 48.87	0	108265..109590	-	441	37675756	-	VVA0096	-	hypothetical protein
97	 49.92	0	109734..111602	-	622	37675757	-	VVA0097	-	hypothetical protein
98	 48.94	0	111732..114479	+	915	37675758	-	VVA0098	-	Zn-dependent peptidase
99	 46.17	0	114523..115605	-	360	37675759	-	VVA0099	-	transcriptional regulator
100	 49.63	0	115784..116875	-	363	37675760	-	VVA0100	-	putative outer membrane porin
47.10	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.