IslandPath Analysis: Bordetella pertussis Tohama I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.71   STD DEV: 3.90
Bordetella pertussis Tohama I, complete genome - 1..4086189
3436 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.34	-1	1..1920	+	639	33591276	gidA	BP0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 66.23	0	1917..2609	+	230	33591277	gidB	BP0002	-	glucose inhibited division protein B
3	 62.16	-1	2606..3403	+	265	33591278	parA	BP0003	-	ParA family protein
4	 67.32	0	3410..4171	+	253	33591279	-	BP0004	-	GNAT family acetyltransferase
5	 67.65	0	4215..5132	+	305	33591280	parB	BP0005	-	chromosome partitioning protein ParB
6	 62.64	-1	6722..7912	+	396	33591281	tuf	BP0007	-	elongation factor Tu
7	 58.79	-2	8151..8531	+	126	33591282	secE	BP0008	-	preprotein translocase subunit SecE
8	 54.49	-2	8541..9074	+	177	33591283	nusG	BP0009	-	transcription antitermination protein NusG
9	 63.19	-1	9138..9569	+	143	33591284	rplK	BP0010	-	50S ribosomal protein L11
10	 64.09	0	9572..10270	+	232	33591285	rplA	BP0011	-	50S ribosomal protein L1
11	 61.14	-1	10513..11037	+	174	33591286	rplJ	BP0013	-	50S ribosomal protein L10
12	 62.76	-1	11119..11502	+	127	33591287	rplL	BP0014	-	50S ribosomal protein L7/L12
13	 63.31	-1	11662..15774	+	1370	33591288	rpoB	BP0015	-	DNA-directed RNA polymerase subunit beta
14	 64.24	0	15774..20018	+	1414	33591289	rpoC	BP0016	-	DNA-directed RNA polymerase subunit beta'
15	 65.93	0	20127..20531	-	134	33591290	-	BP0017	-	putative lipoprotein
16	 70.92	0	20772..21947	+	391	33591291	-	BP0018	-	hypothetical protein
17	 68.20	0	24353..25459	-	368	33591292	-	BP0020	-	putative peptidoglycan binding protein
18	 69.36	0	26471..27286	+	271	33591293	-	BP0022	-	two-component response regulator
19	 64.98	0	27283..28233	-	316	33591294	-	BP0023	-	transposase
20	 60.23	-1	28675..29109	-	144	33591295	-	BP0025	-	hypothetical protein
21	 63.08	-1	29142..30368	-	408	33591296	-	BP0026	-	putative thiolase
22	 56.22	-2	30365..30862	-	165	33591297	-	BP0027	-	MaoC family protein
23	 62.93	-1	31070..31978	-	302	33591298	-	BP0028	-	putative transcriptional regulator
24	 66.67	0	32215..33006	+	263	33591299	-	BP0029	-	enoyl-CoA hydratase
25	 68.71	0	33049..34470	+	473	33591300	-	BP0030	-	hypothetical protein
26	 65.09	0	34626..35576	+	316	33591301	-	BP0031	-	transposase
27	 72.21	+1	35573..36763	-	396	33591302	-	BP0032	-	transporter
28	 66.12	0	37013..37924	+	303	33591303	glyQ	BP0033	-	glycyl-tRNA synthetase subunit alpha
29	 71.34	0	37926..40064	+	712	33591304	glyS	BP0034	-	glycyl-tRNA synthetase beta chain
30	 70.00	0	40061..40600	+	179	33591305	-	BP0035	-	D,D-heptose 1,7-bisphosphate phosphatase
31	 67.08	0	40604..41332	+	242	33591306	-	BP0036	-	acyltransferase
32	 71.25	0	41319..42212	+	297	33591307	-	BP0037	-	hypothetical protein
33	 59.85	-2	42283..42678	+	131	33591308	gloA	BP0038	-	lactoylglutathione lyase
34	 68.36	0	42688..43218	+	176	33591309	def	BP0039	-	peptide deformylase
35	 65.19	0	43664..44614	+	316	33591310	-	BP0041	-	transposase
36	 73.04	+1	45201..45749	+	182	33591311	-	BP0043	-	hypothetical protein
37	 72.15	+1	45721..45957	-	78	33591312	-	BP0044	-	transcriptional regulator
38	 71.36	0	46085..46978	+	297	33591313	-	BP0045	-	hypothetical protein
39	 67.39	0	48148..49395	+	415	33591314	metX	BP0047	-	homoserine O-acetyltransferase
40	 67.64	0	49392..50006	+	204	33591315	-	BP0048	-	hypothetical protein
41	 65.09	0	50142..51092	+	316	33591316	-	BP0049	-	transposase
42	 70.79	0	51180..52391	+	403	33591317	ampG	BP0050	-	muropeptide transporter
43	 70.48	0	53623..54357	-	244	33591318	-	BP0053	-	putative aspartate/glutamate racemase
44	 63.77	-1	54978..55667	-	229	33591319	gltK	BP0055	-	glutamate/aspartate transport system permease protein
45	 64.91	0	55664..56458	-	264	33591320	gltJ	BP0056	-	glutamate/aspartate transport system permease protein
46	 63.44	-1	56505..57404	-	299	33591321	-	BP0057	-	amino-acid ABC transporter binding protein precursor
47	 64.98	0	57498..58448	-	316	33591322	-	BP0058	-	transposase
48	 62.35	-1	59249..60475	-	408	33591323	-	BP0060	-	hypothetical protein
49	 62.38	-1	60475..60894	-	139	33591324	-	BP0061	-	putative DNA-binding protein
50	 52.65	-2	61078..62019	-	313	33591325	-	BP0062	-	hypothetical protein
51	 51.85	-2	62443..63279	-	278	33591327	-	BP0063	-	hypothetical protein
52	 51.72	-2	63474..64055	-	193	33591328	-	BP0064	-	hypothetical protein
53	 42.90	-2	64068..64370	-	100	33591329	-	BP0065	-	putative ferredoxin
54	 51.13	-2	64489..65550	-	353	33591330	-	BP0066	-	oxidoreductase
55	 48.83	-2	65582..66775	-	397	33591331	-	BP0067	-	integral membrane protein
56	 50.68	-2	67483..68664	-	393	33591332	-	BP0069	-	hypothetical protein
57	 64.98	0	69086..70036	+	316	33591333	-	BP0071	-	transposase
58	 59.37	-2	70130..70444	+	104	33591334	-	BP0072	-	transposase
59	 64.73	0	71637..73544	+	635	33591335	htpG	BP0074	-	heat shock protein 90
60	 69.57	0	73706..74326	-	206	33591336	-	BP0075	-	glutathione S-transferase
61	 71.13	0	74358..74939	-	193	33591337	ampD	BP0076	-	N-acetyl-anhydromuranmyl-L-alanine amidase
62	 76.59	+2	75028..75279	-	83	33591338	-	BP0077	-	hypothetical protein
63	 68.21	0	75281..76123	-	280	33591339	-	BP0078	-	hypothetical protein
64	 68.58	0	76229..77638	+	469	33591340	ffh	BP0079	-	signal recognition particle protein
65	 65.09	0	77635..78585	-	316	33591341	-	BP0080	-	transposase
66	 65.07	0	79601..81475	-	624	33591342	bplL	BP0082	-	lipopolysaccharide biosynthesis protein
67	 60.43	-1	82823..83527	-	234	33591343	bplI	BP0085	-	lipopolysaccharide biosynthesis protein
68	 66.41	0	83524..84696	-	390	33591344	bplH	BP0086	-	putative glycosyl transferase
69	 60.10	-1	84892..85485	-	197	33591345	bplG	BP0087	-	sugar transferase
70	 67.40	0	85482..86714	-	410	33591346	bplF	BP0088	-	lipopolysaccharide biosynthesis protein
71	 68.02	0	86732..87991	-	419	33591347	bplE	BP0089	-	glycosyl transferase
72	 68.50	0	88015..89103	-	362	33591348	bplD	BP0090	-	UDP-N-acetylglucosamine 2-epimerase
73	 66.21	0	89111..90211	-	366	33591349	bplC	BP0091	-	lipopolysaccharide biosynthesis protein
74	 66.15	0	90215..90790	-	191	33591350	bplB	BP0092	-	acetyltransferase
75	 65.43	0	90794..91846	-	350	33591351	bplA	BP0093	-	oxidoreductase
76	 68.75	0	91977..92984	+	335	33591352	rfaC	BP0094	-	heptosyltransferase
77	 74.20	+1	92986..94272	+	428	33591353	kdtA	BP0095	-	3-deoxy-D-manno-octulosonic-acid transferase
78	 67.31	0	94289..94444	-	51	33591354	-	BP0096	-	hypothetical protein
79	 74.25	+1	94469..95272	-	267	33591355	baf	BP0097	-	pantothenate kinase
80	 72.43	+1	95269..96135	-	288	33591356	birA	BP0098	-	putative biotin protein ligase
81	 68.79	0	96210..97340	+	376	33591357	-	BP0099	-	putative integral membrane protein
82	 67.98	0	97340..98179	+	279	33591358	-	BP0100	-	ABC transporter ATP-binding protein
83	 75.46	+1	99112..99714	+	200	33591359	-	BP0101A	-	hypothetical protein
84	 70.64	0	99744..100397	+	217	33591360	-	BP0101B	-	hypothetical protein
85	 67.78	0	100530..101786	+	418	33591361	-	BP0102	-	putative penicillin-binding protein precursor
86	 66.67	0	101834..102733	+	299	33591362	-	BP0103	-	class IV aminotransferase
87	 61.59	-1	102809..103084	+	91	33591363	-	BP0104	-	hypothetical protein
88	 69.08	0	103092..103754	+	220	33591364	lipB	BP0105	-	lipoyltransferase
89	 66.37	0	103816..104817	+	333	33591365	lipA	BP0106	-	lipoyl synthase
90	 67.40	0	104832..105380	-	182	33591366	rfbC	BP0107	-	dTDP-4-dehydrorhamnose 3,5-epimerase
91	 72.91	+1	105438..106334	-	298	33591367	rfbD	BP0108	-	dTDP-4-dehydrorhamnose reductase
92	 68.93	0	106331..107392	-	353	33591368	rfbB	BP0109	-	dTDP-glucose 4,6-dehydratase
93	 64.77	0	107428..108378	-	316	33591369	-	BP0110	-	transposase
94	 69.51	0	109278..110471	+	397	33591370	metC	BP0112	-	cystathionine beta-lyase
95	 66.67	0	110553..111182	-	209	33591371	dsbA	BP0113	-	thiol:disulfide interchange protein DsbA precursor
96	 72.22	+1	111244..111927	-	227	33591372	-	BP0114	-	hypothetical protein
97	 68.85	0	111937..113724	-	595	33591373	argS	BP0115	-	arginyl-tRNA synthetase
98	 66.40	0	113874..114254	+	126	33591374	-	BP0116	-	hypothetical protein
99	 68.89	0	114303..114662	+	119	33591375	-	BP0117	-	hypothetical protein
100	 61.75	-1	114945..115961	+	338	33591376	-	BP0118	-	transposase for IS1663
67.71	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.