version 1.0
Akkermansia muciniphila ATCC BAA-835, complete genome - 1..2664102 2138 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 55.61 0 793..1353 - 186 187734517 - Amuc_0001 - NUDIX hydrolase 2 57.50 0 1882..3288 + 468 187734518 - Amuc_0002 - chromosomal replication initiator protein DnaA 3 57.37 0 3438..4373 + 311 187734519 - Amuc_0003 - ABC transporter related 4 56.07 0 4429..5211 + 260 187734520 - Amuc_0004 - hypothetical protein 5 56.55 0 5246..6817 + 523 187734521 - Amuc_0005 - hypothetical protein 6 56.64 0 6846..8900 + 684 187734522 - Amuc_0006 - hypothetical protein 7 61.41 +1 8914..9693 + 259 187734523 - Amuc_0007 - protein of unknown function DUF34 8 62.24 +1 9710..10681 + 323 187734524 - Amuc_0008 - pseudouridine synthase, RluA family 9 57.43 0 11054..12211 + 385 187734525 - Amuc_0009 - chorismate mutase 10 59.74 0 12257..13873 + 538 187734526 - Amuc_0010 - Alpha-L-fucosidase 11 61.97 +1 13898..16282 + 794 187734527 - Amuc_0011 - DNA ligase, NAD-dependent 12 60.59 0 16460..17068 + 202 187734528 - Amuc_0012 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 13 51.85 0 17172..17333 + 53 187734529 - Amuc_0013 - hypothetical protein 14 40.84 -2 17295..18533 - 412 187734530 - Amuc_0014 - hypothetical protein 15 60.22 0 19074..20345 + 423 187734531 - Amuc_0015 - DEAD/DEAH box helicase domain protein 16 57.31 0 20457..21065 + 202 187734532 - Amuc_0016 - hypothetical protein 17 59.20 0 21561..23006 + 481 187734533 - Amuc_0017 - oxidoreductase domain protein 18 57.66 0 23308..24450 + 380 187734534 - Amuc_0018 - hypothetical protein 19 59.38 0 24455..25414 + 319 187734535 - Amuc_0019 - hypothetical protein 20 59.91 0 25433..26587 - 384 187734536 - Amuc_0020 - major facilitator superfamily MFS_1 21 61.66 +1 26737..28134 - 465 187734537 - Amuc_0021 - RNA polymerase, sigma 54 subunit, RpoN 22 55.84 0 28275..28985 + 236 187734538 - Amuc_0022 - lipolytic protein G-D-S-L family 23 45.17 -2 29374..30150 + 258 187734539 - Amuc_0023 - phenazine biosynthesis protein PhzF family 24 60.33 0 30657..31256 + 199 187734540 - Amuc_0024 - protein of unknown function DUF204 25 57.80 0 31260..33593 + 777 187734541 - Amuc_0025 - Tetratricopeptide TPR_2 repeat protein 26 56.16 0 33610..34827 + 405 187734542 - Amuc_0026 - hypothetical protein 27 61.09 +1 35058..36437 - 459 187734543 - Amuc_0027 - AAA ATPase central domain protein 28 53.54 0 36545..36940 - 131 187734544 - Amuc_0028 - hypothetical protein 29 57.07 0 37306..38232 - 308 187734545 - Amuc_0029 - NAD-dependent epimerase/dehydratase 30 56.89 0 38259..39353 - 364 187734546 - Amuc_0030 - hypothetical protein 31 56.51 0 39366..40241 - 291 187734547 - Amuc_0031 - hypothetical protein 32 60.28 0 40350..41069 - 239 187734548 - Amuc_0032 - hypothetical protein 33 57.43 0 41173..41865 + 230 187734549 - Amuc_0033 - peptidase M50 34 60.88 0 41923..43443 + 506 187734550 - Amuc_0034 - prolyl-tRNA synthetase 35 41.55 -2 44582..44995 - 137 187734551 - Amuc_0035 - hypothetical protein 36 54.27 0 45594..51467 - 1957 187734552 - Amuc_0036 - YD repeat protein 37 55.08 0 51964..53448 + 494 187734553 - Amuc_0037 - amino acid permease-associated region 38 57.43 0 53441..54382 + 313 187734554 - Amuc_0038 - Glutaminase 39 50.36 -1 54611..55021 - 136 187734555 - Amuc_0039 - GCN5-related N-acetyltransferase 40 59.01 0 55485..56894 + 469 187734556 - Amuc_0040 - amino acid carrier protein 41 58.22 0 57297..58373 + 358 187734557 - Amuc_0041 - peptide chain release factor 1 42 57.73 0 58390..59295 + 301 187734558 - Amuc_0042 - protein-(glutamine-N5) methyltransferase, release factor-specific 43 60.44 0 59317..61533 + 738 187734559 - Amuc_0043 - primosomal protein N' 44 58.30 0 61593..62417 + 274 187734560 - Amuc_0044 - Diaminopimelate epimerase 45 47.31 -1 62461..63240 - 259 187734561 - Amuc_0045 - hypothetical protein 46 56.18 0 63380..63646 - 88 187734562 - Amuc_0046 - hypothetical protein 47 59.67 0 63997..64668 + 223 187734563 - Amuc_0047 - ubiquinone/menaquinone biosynthesis methyltransferase 48 58.57 0 64665..66170 + 501 187734564 - Amuc_0048 - MATE efflux family protein 49 51.08 -1 66361..66591 - 76 187734565 - Amuc_0049 - hypothetical protein 50 58.91 0 68018..69757 - 579 187734566 - Amuc_0051 - single-stranded-DNA-specific exonuclease RecJ 51 58.49 0 69948..72809 - 953 187734567 - Amuc_0052 - Hyalurononglucosaminidase 52 60.51 0 73252..74193 + 313 187734568 - Amuc_0053 - periplasmic solute binding protein 53 62.07 +1 74190..74624 + 144 187734569 - Amuc_0054 - hypothetical protein 54 62.67 +1 74621..75421 + 266 187734570 - Amuc_0055 - ABC transporter related 55 60.53 0 75418..76281 + 287 187734571 - Amuc_0056 - ABC-3 protein 56 55.12 0 76349..76885 + 178 187734572 - Amuc_0057 - UvrB/UvrC protein 57 59.09 0 76891..77946 + 351 187734573 - Amuc_0058 - ATP:guanido phosphotransferase 58 59.81 0 77975..80557 + 860 187734574 - Amuc_0059 - ATPase AAA-2 domain protein 59 54.61 0 80688..83234 + 848 187734575 - Amuc_0060 - Alpha-N-acetylglucosaminidase 60 39.12 -2 85349..86056 + 235 187734576 - Amuc_0062 - hypothetical protein 61 58.19 0 86369..86710 - 113 187734577 - Amuc_0063 - Rhodanese domain protein 62 56.31 0 86946..87824 - 292 187734578 - Amuc_0064 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 63 58.38 0 87991..89547 + 518 187734579 - Amuc_0065 - 2-isopropylmalate synthase 64 54.32 0 89669..90583 + 304 187734580 - Amuc_0066 - putative ATP/GTP-binding protein 65 55.35 0 90682..91158 + 158 187734581 - Amuc_0067 - GatB/YqeY domain protein 66 57.47 0 91155..91850 + 231 187734582 - Amuc_0068 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 67 60.82 0 91847..92701 + 284 187734583 - Amuc_0069 - NAD-dependent epimerase/dehydratase 68 57.76 0 92893..93858 + 321 187734584 - Amuc_0070 - tryptophanyl-tRNA synthetase 69 52.23 0 93947..94417 + 156 187734585 - Amuc_0071 - UspA domain protein 70 60.45 0 94451..95254 + 267 187734586 - Amuc_0072 - metallophosphoesterase 71 55.97 0 95579..96373 + 264 187734587 - Amuc_0073 - UBA/THIF-type NAD/FAD binding protein 72 58.33 0 96370..96885 + 171 187734588 - Amuc_0074 - hypothetical protein 73 53.75 0 97286..98353 - 355 187734589 - Amuc_0075 - PfkB domain protein 74 56.15 0 98743..99246 + 167 187734590 - Amuc_0076 - NUDIX hydrolase 75 57.92 0 100094..101293 + 399 187734591 - Amuc_0077 - 2-amino-3-ketobutyrate coenzyme A ligase 76 59.53 0 101329..103947 + 872 187734592 - Amuc_0078 - serine/threonine protein kinase 77 59.14 0 104109..104879 + 256 187734593 - Amuc_0079 - Cobyrinic acid ac-diamide synthase 78 58.74 0 105086..107872 + 928 187734594 - Amuc_0080 - serine/threonine protein kinase 79 53.89 0 107958..108536 + 192 187734595 - Amuc_0081 - hypothetical protein 80 48.26 -1 108852..109427 - 191 187734596 - Amuc_0082 - hypothetical protein 81 47.78 -1 109564..110103 - 179 187734597 - Amuc_0083 - hypothetical protein 82 50.79 -1 110100..111743 - 547 187734598 - Amuc_0084 - hypothetical protein 83 57.36 0 112400..112657 + 85 187734599 - Amuc_0085 - thiamine biosynthesis protein ThiS 84 58.94 0 112700..114601 + 633 187734600 - Amuc_0086 - DNA mismatch repair protein MutL 85 54.70 0 114737..114853 - 38 187734601 - Amuc_0087 - hypothetical protein 86 59.14 0 114937..116889 + 650 187734602 - Amuc_0088 - hypothetical protein 87 55.18 0 117286..117642 + 118 187734603 - Amuc_0089 - protein of unknown function DUF488 88 60.12 0 117979..118956 - 325 187734604 - Amuc_0090 - porphobilinogen deaminase 89 56.30 0 118946..119968 - 340 187734605 - Amuc_0091 - glutamyl-tRNA reductase 90 57.44 0 119968..120726 - 252 187734606 - Amuc_0092 - cytochrome c assembly protein 91 55.47 0 120747..121541 - 264 187734607 - Amuc_0093 - protein of unknown function DUF198 92 56.10 0 121649..121894 - 81 187734608 - Amuc_0094 - ribosomal protein S18 93 52.30 0 121926..122099 - 57 187734609 - Amuc_0095 - ribosomal protein L33 94 57.53 0 122133..122756 - 207 187734610 - Amuc_0096 - transcriptional regulator, TraR/DksA family 95 58.96 0 123193..124152 + 319 187734611 - Amuc_0097 - ROK family protein 96 62.33 +1 124157..125125 + 322 187734612 - Amuc_0098 - Fmu (Sun) domain protein 97 60.59 0 125132..125641 + 169 187734613 - Amuc_0099 - phosphodiesterase, MJ0936 family 98 60.78 0 125638..126045 + 135 187734614 - Amuc_0100 - NUDIX hydrolase 99 52.78 0 126094..126237 + 47 187734615 - Amuc_0101 - hypothetical protein 100 58.01 0 126754..128151 + 465 187734616 - Amuc_0102 - efflux transporter, RND family, MFP subunit 56.11 MEAN 4.78 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.