IslandPath Analysis: Akkermansia muciniphila ATCC BAA-835



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.11   STD DEV: 4.78
Akkermansia muciniphila ATCC BAA-835, complete genome - 1..2664102
2138 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.61	0	793..1353	-	186	187734517	-	Amuc_0001	-	NUDIX hydrolase
2	 57.50	0	1882..3288	+	468	187734518	-	Amuc_0002	-	chromosomal replication initiator protein DnaA
3	 57.37	0	3438..4373	+	311	187734519	-	Amuc_0003	-	ABC transporter related
4	 56.07	0	4429..5211	+	260	187734520	-	Amuc_0004	-	hypothetical protein
5	 56.55	0	5246..6817	+	523	187734521	-	Amuc_0005	-	hypothetical protein
6	 56.64	0	6846..8900	+	684	187734522	-	Amuc_0006	-	hypothetical protein
7	 61.41	+1	8914..9693	+	259	187734523	-	Amuc_0007	-	protein of unknown function DUF34
8	 62.24	+1	9710..10681	+	323	187734524	-	Amuc_0008	-	pseudouridine synthase, RluA family
9	 57.43	0	11054..12211	+	385	187734525	-	Amuc_0009	-	chorismate mutase
10	 59.74	0	12257..13873	+	538	187734526	-	Amuc_0010	-	Alpha-L-fucosidase
11	 61.97	+1	13898..16282	+	794	187734527	-	Amuc_0011	-	DNA ligase, NAD-dependent
12	 60.59	0	16460..17068	+	202	187734528	-	Amuc_0012	-	CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
13	 51.85	0	17172..17333	+	53	187734529	-	Amuc_0013	-	hypothetical protein
14	 40.84	-2	17295..18533	-	412	187734530	-	Amuc_0014	-	hypothetical protein
15	 60.22	0	19074..20345	+	423	187734531	-	Amuc_0015	-	DEAD/DEAH box helicase domain protein
16	 57.31	0	20457..21065	+	202	187734532	-	Amuc_0016	-	hypothetical protein
17	 59.20	0	21561..23006	+	481	187734533	-	Amuc_0017	-	oxidoreductase domain protein
18	 57.66	0	23308..24450	+	380	187734534	-	Amuc_0018	-	hypothetical protein
19	 59.38	0	24455..25414	+	319	187734535	-	Amuc_0019	-	hypothetical protein
20	 59.91	0	25433..26587	-	384	187734536	-	Amuc_0020	-	major facilitator superfamily MFS_1
21	 61.66	+1	26737..28134	-	465	187734537	-	Amuc_0021	-	RNA polymerase, sigma 54 subunit, RpoN
22	 55.84	0	28275..28985	+	236	187734538	-	Amuc_0022	-	lipolytic protein G-D-S-L family
23	 45.17	-2	29374..30150	+	258	187734539	-	Amuc_0023	-	phenazine biosynthesis protein PhzF family
24	 60.33	0	30657..31256	+	199	187734540	-	Amuc_0024	-	protein of unknown function DUF204
25	 57.80	0	31260..33593	+	777	187734541	-	Amuc_0025	-	Tetratricopeptide TPR_2 repeat protein
26	 56.16	0	33610..34827	+	405	187734542	-	Amuc_0026	-	hypothetical protein
27	 61.09	+1	35058..36437	-	459	187734543	-	Amuc_0027	-	AAA ATPase central domain protein
28	 53.54	0	36545..36940	-	131	187734544	-	Amuc_0028	-	hypothetical protein
29	 57.07	0	37306..38232	-	308	187734545	-	Amuc_0029	-	NAD-dependent epimerase/dehydratase
30	 56.89	0	38259..39353	-	364	187734546	-	Amuc_0030	-	hypothetical protein
31	 56.51	0	39366..40241	-	291	187734547	-	Amuc_0031	-	hypothetical protein
32	 60.28	0	40350..41069	-	239	187734548	-	Amuc_0032	-	hypothetical protein
33	 57.43	0	41173..41865	+	230	187734549	-	Amuc_0033	-	peptidase M50
34	 60.88	0	41923..43443	+	506	187734550	-	Amuc_0034	-	prolyl-tRNA synthetase
35	 41.55	-2	44582..44995	-	137	187734551	-	Amuc_0035	-	hypothetical protein
36	 54.27	0	45594..51467	-	1957	187734552	-	Amuc_0036	-	YD repeat protein
37	 55.08	0	51964..53448	+	494	187734553	-	Amuc_0037	-	amino acid permease-associated region
38	 57.43	0	53441..54382	+	313	187734554	-	Amuc_0038	-	Glutaminase
39	 50.36	-1	54611..55021	-	136	187734555	-	Amuc_0039	-	GCN5-related N-acetyltransferase
40	 59.01	0	55485..56894	+	469	187734556	-	Amuc_0040	-	amino acid carrier protein
41	 58.22	0	57297..58373	+	358	187734557	-	Amuc_0041	-	peptide chain release factor 1
42	 57.73	0	58390..59295	+	301	187734558	-	Amuc_0042	-	protein-(glutamine-N5) methyltransferase, release factor-specific
43	 60.44	0	59317..61533	+	738	187734559	-	Amuc_0043	-	primosomal protein N'
44	 58.30	0	61593..62417	+	274	187734560	-	Amuc_0044	-	Diaminopimelate epimerase
45	 47.31	-1	62461..63240	-	259	187734561	-	Amuc_0045	-	hypothetical protein
46	 56.18	0	63380..63646	-	88	187734562	-	Amuc_0046	-	hypothetical protein
47	 59.67	0	63997..64668	+	223	187734563	-	Amuc_0047	-	ubiquinone/menaquinone biosynthesis methyltransferase
48	 58.57	0	64665..66170	+	501	187734564	-	Amuc_0048	-	MATE efflux family protein
49	 51.08	-1	66361..66591	-	76	187734565	-	Amuc_0049	-	hypothetical protein
50	 58.91	0	68018..69757	-	579	187734566	-	Amuc_0051	-	single-stranded-DNA-specific exonuclease RecJ
51	 58.49	0	69948..72809	-	953	187734567	-	Amuc_0052	-	Hyalurononglucosaminidase
52	 60.51	0	73252..74193	+	313	187734568	-	Amuc_0053	-	periplasmic solute binding protein
53	 62.07	+1	74190..74624	+	144	187734569	-	Amuc_0054	-	hypothetical protein
54	 62.67	+1	74621..75421	+	266	187734570	-	Amuc_0055	-	ABC transporter related
55	 60.53	0	75418..76281	+	287	187734571	-	Amuc_0056	-	ABC-3 protein
56	 55.12	0	76349..76885	+	178	187734572	-	Amuc_0057	-	UvrB/UvrC protein
57	 59.09	0	76891..77946	+	351	187734573	-	Amuc_0058	-	ATP:guanido phosphotransferase
58	 59.81	0	77975..80557	+	860	187734574	-	Amuc_0059	-	ATPase AAA-2 domain protein
59	 54.61	0	80688..83234	+	848	187734575	-	Amuc_0060	-	Alpha-N-acetylglucosaminidase
60	 39.12	-2	85349..86056	+	235	187734576	-	Amuc_0062	-	hypothetical protein
61	 58.19	0	86369..86710	-	113	187734577	-	Amuc_0063	-	Rhodanese domain protein
62	 56.31	0	86946..87824	-	292	187734578	-	Amuc_0064	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
63	 58.38	0	87991..89547	+	518	187734579	-	Amuc_0065	-	2-isopropylmalate synthase
64	 54.32	0	89669..90583	+	304	187734580	-	Amuc_0066	-	putative ATP/GTP-binding protein
65	 55.35	0	90682..91158	+	158	187734581	-	Amuc_0067	-	GatB/YqeY domain protein
66	 57.47	0	91155..91850	+	231	187734582	-	Amuc_0068	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
67	 60.82	0	91847..92701	+	284	187734583	-	Amuc_0069	-	NAD-dependent epimerase/dehydratase
68	 57.76	0	92893..93858	+	321	187734584	-	Amuc_0070	-	tryptophanyl-tRNA synthetase
69	 52.23	0	93947..94417	+	156	187734585	-	Amuc_0071	-	UspA domain protein
70	 60.45	0	94451..95254	+	267	187734586	-	Amuc_0072	-	metallophosphoesterase
71	 55.97	0	95579..96373	+	264	187734587	-	Amuc_0073	-	UBA/THIF-type NAD/FAD binding protein
72	 58.33	0	96370..96885	+	171	187734588	-	Amuc_0074	-	hypothetical protein
73	 53.75	0	97286..98353	-	355	187734589	-	Amuc_0075	-	PfkB domain protein
74	 56.15	0	98743..99246	+	167	187734590	-	Amuc_0076	-	NUDIX hydrolase
75	 57.92	0	100094..101293	+	399	187734591	-	Amuc_0077	-	2-amino-3-ketobutyrate coenzyme A ligase
76	 59.53	0	101329..103947	+	872	187734592	-	Amuc_0078	-	serine/threonine protein kinase
77	 59.14	0	104109..104879	+	256	187734593	-	Amuc_0079	-	Cobyrinic acid ac-diamide synthase
78	 58.74	0	105086..107872	+	928	187734594	-	Amuc_0080	-	serine/threonine protein kinase
79	 53.89	0	107958..108536	+	192	187734595	-	Amuc_0081	-	hypothetical protein
80	 48.26	-1	108852..109427	-	191	187734596	-	Amuc_0082	-	hypothetical protein
81	 47.78	-1	109564..110103	-	179	187734597	-	Amuc_0083	-	hypothetical protein
82	 50.79	-1	110100..111743	-	547	187734598	-	Amuc_0084	-	hypothetical protein
83	 57.36	0	112400..112657	+	85	187734599	-	Amuc_0085	-	thiamine biosynthesis protein ThiS
84	 58.94	0	112700..114601	+	633	187734600	-	Amuc_0086	-	DNA mismatch repair protein MutL
85	 54.70	0	114737..114853	-	38	187734601	-	Amuc_0087	-	hypothetical protein
86	 59.14	0	114937..116889	+	650	187734602	-	Amuc_0088	-	hypothetical protein
87	 55.18	0	117286..117642	+	118	187734603	-	Amuc_0089	-	protein of unknown function DUF488
88	 60.12	0	117979..118956	-	325	187734604	-	Amuc_0090	-	porphobilinogen deaminase
89	 56.30	0	118946..119968	-	340	187734605	-	Amuc_0091	-	glutamyl-tRNA reductase
90	 57.44	0	119968..120726	-	252	187734606	-	Amuc_0092	-	cytochrome c assembly protein
91	 55.47	0	120747..121541	-	264	187734607	-	Amuc_0093	-	protein of unknown function DUF198
92	 56.10	0	121649..121894	-	81	187734608	-	Amuc_0094	-	ribosomal protein S18
93	 52.30	0	121926..122099	-	57	187734609	-	Amuc_0095	-	ribosomal protein L33
94	 57.53	0	122133..122756	-	207	187734610	-	Amuc_0096	-	transcriptional regulator, TraR/DksA family
95	 58.96	0	123193..124152	+	319	187734611	-	Amuc_0097	-	ROK family protein
96	 62.33	+1	124157..125125	+	322	187734612	-	Amuc_0098	-	Fmu (Sun) domain protein
97	 60.59	0	125132..125641	+	169	187734613	-	Amuc_0099	-	phosphodiesterase, MJ0936 family
98	 60.78	0	125638..126045	+	135	187734614	-	Amuc_0100	-	NUDIX hydrolase
99	 52.78	0	126094..126237	+	47	187734615	-	Amuc_0101	-	hypothetical protein
100	 58.01	0	126754..128151	+	465	187734616	-	Amuc_0102	-	efflux transporter, RND family, MFP subunit
56.11	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.