IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes str. Manfredo



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.65 STD DEV: 3.69
Streptococcus pyogenes str. Manfredo, complete genome - 1..1841271
1745 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.26	-1	202..1557	+	451	139472889	dnaA	SpyM50001	-	chromosomal replication initiation protein
2	 33.42	-1	1712..2848	+	378	139472890	dnaN	SpyM50002	-	DNA polymerase III subunit beta
3	 32.32	-1	2923..3120	+	65	139472891	-	SpyM50003	-	hypothetical protein
4	 37.28	0	3450..4565	+	371	139472892	-	SpyM50004	-	translation-associated GTPase
5	 31.93	-1	4635..5204	+	189	139472893	pth	SpyM50005	-	peptidyl-tRNA hydrolase
6	 35.30	0	5207..8710	+	1167	139472894	trcF	SpyM50006	-	putative transcription-repair coupling factor
7	 31.14	-2	8872..9144	+	90	139472895	-	SpyM50007	-	S4 domain-containing protein
8	 26.61	-2	9131..9502	+	123	139472896	-	SpyM50008	-	putative septum formation initiator protein
9	 26.19	-2	9499..9624	+	41	139472897	-	SpyM50009	-	hypothetical protein
10	 31.62	-1	9637..10923	+	428	139472898	-	SpyM50010	-	hypothetical protein
11	 28.36	-2	10920..12206	+	428	139472899	-	SpyM50011	-	PP-loop family protein
12	 30.39	-2	12211..12753	+	180	139472900	hpt	SpyM50012	-	hypoxanthine-guanine phosphoribosyltransferase
13	 37.83	0	12775..14754	+	659	139472901	ftsH	SpyM50013	-	putative cell division protease FtsH
14	 32.83	-1	15079..16470	+	463	139472902	-	SpyM50014	-	putative amino acid permease
15	 40.69	0	30944..32140	+	398	139472903	-	SpyM50015	-	putative amidase
16	 38.94	0	32393..33355	+	320	139472904	prs1	SpyM50016	-	ribose-phosphate pyrophosphokinase
17	 30.95	-2	33541..34296	+	251	139472905	recO	SpyM50017	-	DNA repair protein RecO
18	 38.10	0	34399..35406	+	335	139472906	plsX	SpyM50018	-	putative glycerol-3-phosphate acyltransferase PlsX
19	 30.04	-2	35399..35641	+	80	139472907	-	SpyM50019	-	acyl carrier protein
20	 44.81	+1	36573..40346	+	1257	139472908	-	SpyM50022	-	putative phosphoribosylformylglycinamidine synthase protein
21	 38.69	0	40580..42034	+	484	139472909	purF	SpyM50023	-	amidophosphoribosyltransferase
22	 42.52	+1	42062..43084	+	340	139472910	purM	SpyM50024	-	phosphoribosylaminoimidazole synthetase
23	 46.85	+2	43252..43806	+	184	139472911	purN	SpyM50025	-	phosphoribosylglycinamide formyltransferase
24	 39.73	0	45596..46720	-	374	139472912	-	SpyM50028	-	putative amidase
25	 48.50	+2	46973..48238	+	421	139472913	purD	SpyM50029	-	phosphoribosylamine--glycine ligase
26	 50.10	+2	48519..49007	+	162	139472914	purE	SpyM50030	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
27	 48.51	+2	48994..50067	+	357	139472915	purK	SpyM50031	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
28	 30.16	-2	50069..51487	+	472	139472916	-	SpyM50032	-	hypothetical protein
29	 44.93	+1	51507..52799	+	430	139472917	purB	SpyM50033	-	adenylosuccinate lyase
30	 29.71	-2	52930..53841	+	303	139472918	-	SpyM50034	-	putative DNA-binding protein
31	 39.44	0	54061..55059	+	332	139472919	ruvB	SpyM50035	-	Holliday junction DNA helicase B
32	 35.39	0	55197..55634	+	145	139472920	-	SpyM50036	-	putative phosphotyrosine protein phosphatase
33	 35.32	0	55657..56058	+	133	139472921	-	SpyM50037	-	hypothetical protein
34	 36.54	0	56055..57830	+	591	139472922	-	SpyM50038	-	acyltransferase family protein
35	 40.30	0	58139..60781	+	880	139472923	adhE	SpyM50039	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
36	 42.18	0	61033..62049	+	338	139472924	adhP	SpyM50040	-	alcohol dehydrogenase
37	 40.70	0	62437..63726	+	429	139472925	-	SpyM50041	-	MATE family transporter
38	 40.13	0	65004..65312	+	102	139472926	rpsJ	SpyM50043	-	30S ribosomal protein S10
39	 42.26	0	65560..66186	+	208	139472927	rplC	SpyM50044	-	50S ribosomal protein L3
40	 42.47	+1	66210..66833	+	207	139472928	rplD	SpyM50045	-	50S ribosomal protein L4
41	 37.71	0	66833..67129	+	98	139472929	rplW	SpyM50046	-	50S ribosomal protein L23
42	 43.53	+1	67147..67980	+	277	139472930	rplB	SpyM50047	-	50S ribosomal protein L2
43	 39.78	0	68119..68397	+	92	139472931	rpsS	SpyM50048	-	30S ribosomal protein S19
44	 39.71	0	68413..68757	+	114	139472932	rplV	SpyM50049	-	50S ribosomal protein L22
45	 41.44	0	68770..69423	+	217	139472933	rpsC	SpyM50050	-	30S ribosomal protein S3
46	 43.24	+1	69427..69840	+	137	139472934	rplP	SpyM50051	-	50S ribosomal protein L16
47	 34.78	-1	69850..70056	+	68	139472935	rpmC	SpyM50052	-	50S ribosomal protein L29
48	 38.31	0	70082..70342	+	86	139472936	rpsQ	SpyM50053	-	30S ribosomal protein S17
49	 44.17	+1	70367..70735	+	122	139472937	rplN	SpyM50054	-	50S ribosomal protein L14
50	 36.60	0	70814..71119	+	101	139472938	rplX	SpyM50055	-	50S ribosomal protein L24
51	 40.52	0	71143..71685	+	180	139472939	rplE	SpyM50056	-	50S ribosomal protein L5
52	 39.25	0	71701..71886	+	61	139472940	rpsN	SpyM50057	-	30S ribosomal protein S14
53	 36.84	0	72037..72435	+	132	139472941	rpsH	SpyM50058	-	30S ribosomal protein S8
54	 39.48	0	72638..73174	+	178	139472942	rplF	SpyM50059	-	50S ribosomal protein L6
55	 45.94	+1	73279..73635	+	118	139472943	rplR	SpyM50060	-	50S ribosomal protein L18
56	 42.42	+1	73654..74148	+	164	139472944	rpsE	SpyM50061	-	30S ribosomal protein S5
57	 37.16	0	74163..74345	+	60	139472945	rpmD	SpyM50062	-	50S ribosomal protein L30
58	 39.91	0	74560..75000	+	146	139472946	rplO	SpyM50063	-	50S ribosomal protein L15
59	 36.55	0	75017..76321	+	434	139472947	secY	SpyM50064	-	preprotein translocase subunit SecY
60	 39.59	0	76471..77109	+	212	139472948	adk	SpyM50065	-	adenylate kinase
61	 36.99	0	77227..77445	+	72	139472949	infA	SpyM50066	-	translation initiation factor IF-1
62	 37.61	0	77471..77587	+	38	139472950	rpmJ	SpyM50066A	-	50S ribosomal protein L36
63	 39.62	0	77605..77970	+	121	139472951	rpsM	SpyM50067	-	30S ribosomal protein S13
64	 44.01	+1	77988..78371	+	127	139472952	rpsK	SpyM50068	-	30S ribosomal protein S11
65	 38.23	0	78417..79355	+	312	139472953	rpoA	SpyM50069	-	DNA-directed RNA polymerase subunit alpha
66	 40.31	0	79370..79756	+	128	139472954	rplQ	SpyM50070	-	50S ribosomal protein L17
67	 43.03	+1	80380..81369	+	329	139472955	-	SpyM50071	-	insertion sequence IS1239 putative transposase
68	 34.23	-1	89598..90041	+	147	139472956	-	SpyM50075	-	MarR family regulatory protein
69	 40.97	0	90045..90764	+	239	139472957	-	SpyM50076	-	ABC transporter ATP-binding protein
70	 38.60	0	90757..91572	+	271	139472958	-	SpyM50077	-	ABC transporter permease protein
71	 41.85	0	92045..93301	-	418	139472959	tyrS	SpyM50079	-	tyrosyl-tRNA synthetase
72	 40.63	0	93405..95705	+	766	139472960	pbp1B	SpyM50080	-	putative penicillin-binding protein 1B
73	 43.37	+1	95969..99535	+	1188	139472961	rpoB	SpyM50081	-	DNA-directed RNA polymerase subunit beta
74	 43.79	+1	99626..103267	+	1213	139472962	rpoC	SpyM50082	-	DNA-directed RNA polymerase subunit beta'
75	 34.97	0	103419..103784	+	121	139472963	-	SpyM50083	-	putative DNA binding protein
76	 37.27	0	103877..104815	+	312	139472964	-	SpyM50084	-	putative competence protein
77	 34.75	-1	104799..105785	+	328	139472965	-	SpyM50085	-	putative competence protein
78	 33.94	-1	105787..106113	+	108	139472966	comYC	SpyM50086	-	putative competence protein
79	 34.27	-1	106088..106516	+	142	139472967	-	SpyM50087	-	putative competence protein
80	 37.55	0	106521..106757	+	78	139472968	-	SpyM50088	-	hypothetical protein
81	 35.86	0	106750..107184	+	144	139472969	-	SpyM50089	-	hypothetical protein
82	 35.47	0	107168..107494	+	108	139472970	-	SpyM50090	-	hypothetical protein
83	 38.36	0	107592..108545	+	317	139472971	-	SpyM50091	-	hypothetical protein
84	 38.68	0	108604..109800	+	398	139472972	ackA	SpyM50092	-	acetate kinase
85	 35.92	0	109987..110295	+	102	139472973	-	SpyM50093	-	hypothetical protein
86	 43.71	+1	110378..111148	-	256	139472974	proC	SpyM50094	-	pyrroline-5-carboxylate reductase
87	 44.94	+1	111196..112263	-	355	139472975	pepA	SpyM50095	-	putative glutamyl-aminopeptidase
88	 38.18	0	112373..112537	-	54	139472976	-	SpyM50095A	-	hypothetical protein
89	 37.54	0	112728..113012	+	94	139472977	-	SpyM50096	-	hypothetical protein
90	 35.22	0	113009..113326	+	105	139472978	-	SpyM50097	-	putative thioredoxin
91	 42.58	+1	113344..113970	+	208	139472979	-	SpyM50098	-	putative tRNA-binding protein
92	 39.14	0	114121..114516	+	131	139472980	-	SpyM50099	-	single-strand DNA-binding protein
93	 39.56	0	114776..115417	-	213	139472981	-	SpyM50100	-	putative deoxyadenosine kinase protein
94	 45.71	+1	115437..116414	-	325	139472982	-	SpyM50101	-	tRNA-dihydrouridine synthase
95	 42.15	0	116401..117273	-	290	139472983	hslO	SpyM50102	-	Hsp33-like chaperonin
96	 31.51	-1	117399..118934	-	511	139472984	rofA	SpyM50103	-	RofA transcriptional regulator
97	 35.11	0	119366..120937	+	523	139472985	-	SpyM50104	-	putative surface-anchored protein
98	 36.59	0	120930..121451	+	173	139472986	-	SpyM50105	-	putative signal peptidase
99	 34.37	-1	121458..122516	+	352	139472987	-	SpyM50106	-	putative surface-anchored protein
100	 32.79	-1	122517..123257	+	246	139472988	srtB	SpyM50107	-	sortase B
38.65	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.