IslandPath Analysis: Streptococcus suis 05ZYH33



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.20   STD DEV: 4.62
Streptococcus suis 05ZYH33, complete genome - 1..2096309
2186 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.19	0	1..1374	+	457	146319849	dnaA	SSU05_0001	-	chromosomal replication initiation protein
2	 34.74	-1	1528..2664	+	378	146317664	-	SSU05_0002	-	DNA polymerase III subunit beta
3	 32.54	-1	2756..3637	+	293	146317665	-	SSU05_0003	-	sphingosine kinase and enzymes related to diacylglycerol kinase
4	 43.54	0	3647..3793	+	48	146317666	-	SSU05_0004	-	hypothetical protein
5	 42.26	0	3947..4282	+	111	146317667	-	SSU05_0005	-	transcriptional regulator
6	 44.96	0	4424..5515	+	363	146317668	-	SSU05_0006	-	translation-associated GTPase
7	 39.30	0	5673..6242	+	189	146317669	-	SSU05_0007	-	peptidyl-tRNA hydrolase
8	 37.88	0	6242..9736	+	1164	146317670	-	SSU05_0008	-	transcription-repair coupling factor
9	 32.23	-1	9786..10058	+	90	146317671	-	SSU05_0009	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit
10	 35.77	-1	10045..10413	+	122	146317672	-	SSU05_0010	-	septum formation initiator
11	 26.32	-2	10410..10523	+	37	146317673	-	SSU05_0011	-	hypothetical protein
12	 34.27	-1	10536..11816	+	426	146317674	-	SSU05_0012	-	Beta-lactamase class A
13	 34.36	-1	11817..13085	+	422	146317675	-	SSU05_0013	-	ATPase
14	 35.73	-1	13093..13635	+	180	146317676	-	SSU05_0014	-	hypoxanthine-guanine phosphoribosyltransferase
15	 40.12	0	13657..15630	+	657	146317677	-	SSU05_0015	-	ATP-dependent Zn protease
16	 35.24	-1	15968..16438	+	156	146317678	-	SSU05_0016	-	Signal transduction histidine kinase
17	 35.48	-1	23570..24406	+	278	146317679	-	SSU05_0019	-	putative cell shape-determining protein MreC
18	 42.36	0	24957..26252	+	431	146317680	-	SSU05_0020	-	hypothetical protein
19	 40.77	0	26513..27319	+	268	146317681	-	SSU05_0021	-	phosphoribosylpyrophosphate synthetase
20	 44.70	0	27406..28584	+	392	146317682	-	SSU05_0022	-	aromatic amino acid aminotransferase
21	 41.38	0	28571..29353	+	260	146317683	-	SSU05_0023	-	DNA repair protein RecO
22	 48.61	+1	29350..30357	+	335	146317684	-	SSU05_0024	-	putative glycerol-3-phosphate acyltransferase PlsX
23	 34.54	-1	30350..30598	+	82	146317685	-	SSU05_0025	-	Acyl carrier protein
24	 42.66	0	30716..31423	+	235	146317686	-	SSU05_0026	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
25	 47.30	+1	31427..35155	+	1242	146317687	-	SSU05_0027	-	phosphoribosylformylglycinamidine synthase domain-containing protein
26	 46.39	+1	35158..36612	+	484	146317688	-	SSU05_0028	-	amidophosphoribosyltransferase
27	 50.00	+1	36653..37690	+	345	146317689	-	SSU05_0029	-	phosphoribosylaminoimidazole synthetase
28	 43.86	0	37687..37971	+	94	146317690	-	SSU05_0030	-	folate-dependent phosphoribosylglycinamide formyltransferase PurN
29	 46.67	+1	37940..38239	+	99	146317691	-	SSU05_0031	-	phosphoribosyl glycinamide transformylase-N
30	 49.35	+1	38249..39796	+	515	146317692	purH	SSU05_0032	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
31	 52.41	+2	39922..41184	+	420	146317693	-	SSU05_0033	-	phosphoribosylamine--glycine ligase
32	 53.17	+2	41210..41698	+	162	146317694	-	SSU05_0034	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
33	 49.95	+1	41685..42719	+	344	146317695	-	SSU05_0035	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
34	 29.92	-2	42810..43571	+	253	146317696	-	SSU05_0036	-	hypothetical protein
35	 29.22	-2	43644..44081	+	145	146317697	-	SSU05_0037	-	hypothetical protein
36	 28.37	-2	44145..44870	+	241	146317698	-	SSU05_0038	-	hypothetical protein
37	 49.11	+1	44872..46164	+	430	146317699	-	SSU05_0039	-	adenylosuccinate lyase
38	 32.12	-1	46571..46735	+	54	146317700	-	SSU05_0040	-	hypothetical protein
39	 37.07	0	47080..47829	+	249	146317701	-	SSU05_0041	-	amino acid transporter
40	 36.96	0	47839..48417	+	192	146317703	-	SSU05_0042	-	metal-dependent membrane protease
41	 38.54	0	48039..48134	+	31	146317702	-	SSU05_0043	-	hypothetical protein
42	 37.68	0	48378..48860	+	160	146317704	-	SSU05_0044	-	hypothetical protein
43	 41.58	0	48853..49725	+	290	146317705	-	SSU05_0045	-	ABC-type multidrug transport system, ATPase component
44	 37.98	0	49725..50498	+	257	146317706	-	SSU05_0046	-	ABC-type sugar transport system, permease component
45	 40.37	0	50501..50983	+	160	146317707	-	SSU05_0047	-	ABC-type multidrug transport system, ATPase and permease component
46	 41.91	0	50991..52214	+	407	146317708	-	SSU05_0048	-	ABC-type multidrug transport system, ATPase and permease component
47	 39.66	0	52316..52489	+	57	146317709	-	SSU05_0049	-	hypothetical protein
48	 53.19	+2	52784..53785	+	333	146317710	ruvB	SSU05_0050	-	Holliday junction DNA helicase B
49	 47.79	+1	53785..54531	+	248	146317711	-	SSU05_0051	-	hypothetical protein
50	 43.08	0	54533..55168	+	211	146317712	-	SSU05_0052	-	phosphatase
51	 35.85	-1	55400..56314	+	304	146317713	-	SSU05_0053	-	transcriptional regulator
52	 42.78	0	56719..57882	+	387	146317714	-	SSU05_0054	-	transposase
53	 37.70	0	58420..59358	-	312	146317715	-	SSU05_0055	-	transposase
54	 44.91	0	59492..60718	+	408	146317716	-	SSU05_0056	-	folylpolyglutamate synthase
55	 35.09	-1	60743..60856	+	37	146317717	-	SSU05_0057	-	hypothetical protein
56	 36.61	0	60909..62432	+	507	146317718	-	SSU05_0058	-	Heme/copper-type cytochrome/quinol oxidase, subunit 1
57	 43.43	0	62547..64487	+	646	146317719	mutL	SSU05_0059	-	DNA mismatch repair protein
58	 41.96	0	64526..65116	+	196	146317720	ruvA	SSU05_0060	-	Holliday junction DNA helicase motor protein
59	 42.81	0	65757..66410	+	217	146317721	-	SSU05_0061	-	3-methyladenine DNA glycosylase
60	 47.04	+1	66411..67628	+	405	146317722	-	SSU05_0062	-	nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
61	 40.86	0	67749..67841	+	30	146317723	-	SSU05_0063	-	recombination protein A
62	 44.93	0	67866..68831	+	321	146317724	-	SSU05_0064	-	RecA/RadA recombinase
63	 36.34	-1	69067..69465	+	132	146317725	spxA	SSU05_0065	-	transcriptional regulator Spx
64	 40.45	0	69565..69831	+	88	146317726	-	SSU05_0066	-	hypothetical protein
65	 41.19	0	69831..70250	+	139	146317727	-	SSU05_0067	-	Holliday junction resolvase-like protein
66	 41.43	0	70262..70582	+	106	146317728	-	SSU05_0068	-	hypothetical protein
67	 34.63	-1	70754..71368	+	204	146317729	-	SSU05_0069	-	hypothetical protein
68	 40.87	0	71809..72339	+	176	146317730	-	SSU05_0070	-	ribosomal protein S10
69	 41.47	0	72436..73062	+	208	146317731	rplC	SSU05_0071	-	50S ribosomal protein L3
70	 43.75	0	73087..73710	+	207	146317732	rplD	SSU05_0072	-	50S ribosomal protein L4
71	 40.33	0	73710..74009	+	99	146317733	rplW	SSU05_0073	-	50S ribosomal protein L23
72	 45.56	0	74027..74860	+	277	146317734	rplB	SSU05_0074	-	50S ribosomal protein L2
73	 39.01	0	75111..75392	+	93	162139882	rpsS	SSU05_0075	-	30S ribosomal protein S19
74	 44.35	0	75410..75754	+	114	146317736	rplV	SSU05_0076	-	50S ribosomal protein L22
75	 43.43	0	75766..76419	+	217	146317737	rpsC	SSU05_0077	-	30S ribosomal protein S3
76	 43.96	0	76423..76836	+	137	146317738	rplP	SSU05_0078	-	50S ribosomal protein L16
77	 36.23	-1	76846..77052	+	68	146317739	-	SSU05_0079	-	50S ribosomal protein L29
78	 37.93	0	77076..77336	+	86	146317740	rpsQ	SSU05_0080	-	30S ribosomal protein S17
79	 44.99	0	77361..77729	+	122	146317741	rplN	SSU05_0081	-	50S ribosomal protein L14
80	 39.22	0	77868..78173	+	101	146317742	rplX	SSU05_0082	-	50S ribosomal protein L24
81	 41.25	0	78197..78739	+	180	146317743	rplE	SSU05_0083	-	50S ribosomal protein L5
82	 38.10	0	79276..79674	+	132	146317744	rpsH	SSU05_0084	-	30S ribosomal protein S8
83	 43.20	0	80140..80676	+	178	146317745	rplF	SSU05_0085	-	50S ribosomal protein L6
84	 44.54	0	80756..81121	+	121	146317746	rplR	SSU05_0086	-	50S ribosomal protein L18
85	 45.45	0	81140..81634	+	164	146317747	rpsE	SSU05_0087	-	30S ribosomal protein S5
86	 38.25	0	81649..81831	+	60	146317748	rpmD	SSU05_0088	-	50S ribosomal protein L30
87	 41.77	0	81910..82407	+	165	146317749	-	SSU05_0089	-	ribosomal protein L15
88	 37.22	0	82421..83731	+	436	146317750	-	SSU05_0090	-	preprotein translocase subunit SecY
89	 40.81	0	83825..84466	+	213	146317751	adk	SSU05_0091	-	adenylate kinase
90	 40.64	0	84588..84806	+	72	146317752	infA	SSU05_0092	-	translation initiation factor IF-1
91	 40.98	0	84967..85332	+	121	146317753	rpsM	SSU05_0093	-	30S ribosomal protein S13
92	 49.04	+1	85472..85732	+	86	146317754	-	SSU05_0094	-	30S ribosomal protein S11
93	 38.66	0	85777..86715	+	312	146317755	-	SSU05_0095	-	DNA-directed RNA polymerase subunit alpha
94	 40.38	0	86730..86885	+	51	146317756	-	SSU05_0096	-	ribosomal protein L17
95	 41.44	0	86896..87117	+	73	146317757	-	SSU05_0097	-	ribosomal protein L17
96	 32.46	-1	93948..95090	-	380	146317758	-	SSU05_0100	-	hypothetical protein
97	 40.10	0	95071..95277	-	68	146317759	-	SSU05_0101	-	hypothetical protein
98	 37.36	0	95338..96354	-	338	146317760	-	SSU05_0102	-	hypothetical protein
99	 35.95	-1	96359..96778	-	139	146317761	-	SSU05_0103	-	hypothetical protein
100	 35.25	-1	97114..98310	-	398	146317762	-	SSU05_0104	-	hypothetical protein
41.20	MEAN

4.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.