IslandPath Analysis: Campylobacter jejuni subsp. doylei 269.97



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.44   STD DEV: 3.88
Campylobacter jejuni subsp. doylei 269.97, complete genome - 1..1845106
1731 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.16	0	1..1323	+	440	153951168	dnaA	JJD26997_0001	-	chromosomal replication initiation protein
2	 25.56	-1	1483..2550	+	355	153952198	dnaN	JJD26997_0002	-	DNA polymerase III subunit beta
3	 33.12	0	2579..4888	+	769	153951349	gyrB	JJD26997_0003	-	DNA gyrase subunit B
4	 31.94	0	4936..6582	-	548	153952107	-	JJD26997_0004	-	acetate permease
5	 28.06	0	6579..6938	-	119	153951210	-	JJD26997_0005	-	hypothetical protein
6	 31.80	0	7169..8470	+	433	153952179	-	JJD26997_0006	-	Na+/H+ antiporter family protein
7	 34.69	+1	8605..13092	+	1495	153951980	-	JJD26997_0007	-	glutamate synthase, large subunit
8	 24.47	-1	13114..14805	+	563	153951216	-	JJD26997_0008	-	hypothetical protein
9	 34.92	+1	14822..16267	+	481	153951673	gltD	JJD26997_0009	-	glutamate synthase subunit beta
10	 32.99	0	16268..16843	-	191	153951148	rnhB	JJD26997_0010	-	ribonuclease HII
11	 28.33	0	16876..17115	-	79	153951474	comEA	JJD26997_0011	-	competence protein ComEA
12	 35.14	+1	17181..17732	-	183	153952482	rbr	JJD26997_0012	-	rubrerythrin
13	 37.45	+1	17988..19664	+	558	153952083	ilvD	JJD26997_0013	-	dihydroxy-acid dehydratase
14	 32.84	0	20162..21388	-	408	153951860	-	JJD26997_0015	-	hypothetical protein
15	 33.63	0	21465..22139	+	224	153950993	-	JJD26997_0016	-	exsB protein
16	 33.92	0	22160..23686	-	508	153950977	-	JJD26997_0017	-	DsbB family disulfide bond formation protein
17	 30.95	0	23698..23865	-	55	153951761	-	JJD26997_0018	-	hypothetical protein
18	 33.10	0	26450..27316	-	288	153951098	-	JJD26997_0023	-	fumarylacetoacetate hydrolase family protein
19	 29.57	0	27427..28329	-	300	153952071	-	JJD26997_0024	-	RNA pseudouridine synthase family protein
20	 34.54	+1	28407..29735	+	442	153951291	purB-1	JJD26997_0025	-	adenylosuccinate lyase
21	 33.76	0	29751..32120	+	789	153952334	nrdA	JJD26997_0026	-	ribonucleotide-diphosphate reductase subunit alpha
22	 31.82	0	32159..33544	-	461	153951390	-	JJD26997_0027	-	sodium/dicarboxylate symporter
23	 34.46	+1	33664..34287	-	207	153952167	thyX	JJD26997_0028	-	FAD-dependent thymidylate synthase
24	 34.99	+1	34406..36037	+	543	153951536	pyrG	JJD26997_0029	-	CTP synthetase
25	 29.71	0	36024..37595	+	523	153952383	recJ	JJD26997_0030	-	single-stranded-DNA-specific exonuclease RecJ
26	 35.05	+1	37681..38727	+	348	153951810	ansA	JJD26997_0031	-	L-asparaginase
27	 24.21	-1	41479..42081	+	200	153951062	rhtC	JJD26997_0035	-	threonine efflux protein
28	 21.28	-2	43048..43188	+	46	153952296	-	JJD26997_0039	-	hypothetical protein
29	 37.34	+1	47433..49103	-	556	153951153	ggt	JJD26997_0042	-	gamma-glutamyltransferase
30	 29.74	0	49333..53091	+	1252	153951784	-	JJD26997_0043	-	type II restriction-modification enzyme
31	 32.49	0	53802..54632	+	276	153951314	-	JJD26997_0046	-	GTP-binding protein LepA
32	 37.79	+1	54598..55965	-	455	153952211	-	JJD26997_0045	-	CitT protein
33	 34.04	0	56076..57065	-	329	153951558	mraY	JJD26997_0047	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
34	 32.68	0	57271..58032	-	253	153951938	-	JJD26997_0048	-	hypothetical protein
35	 31.19	0	58791..60140	+	449	153952213	-	JJD26997_0050	-	hypothetical protein
36	 36.78	+1	60164..61207	-	347	153951027	-	JJD26997_0051	-	cytochrome c family protein
37	 25.77	-1	61385..62032	-	215	153952411	-	JJD26997_0052	-	hypothetical protein
38	 37.04	+1	62032..63840	-	602	153951246	typA	JJD26997_0053	-	GTP-binding protein TypA
39	 22.58	-2	63805..63990	+	61	153951897	-	JJD26997_0054	-	hypothetical protein
40	 26.94	0	64317..66083	+	588	153951142	-	JJD26997_0056	-	hypothetical protein
41	 34.38	+1	66142..67005	+	287	153952103	flgD	JJD26997_0057	-	flagellar basal body rod modification protein
42	 33.70	0	67009..68646	+	545	153951334	flgE-1	JJD26997_0058	-	flagellar hook protein
43	 25.52	-1	68650..70518	-	622	153951498	-	JJD26997_0059	-	hypothetical protein
44	 31.96	0	72256..73272	-	338	153951834	trmU	JJD26997_0062	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
45	 31.20	0	73269..73877	-	202	153951989	-	JJD26997_0063	-	lysine decarboxylase family protein
46	 28.46	0	73996..74733	-	245	153952498	-	JJD26997_0064	-	hypothetical protein
47	 36.11	+1	75063..75206	-	47	153952375	-	JJD26997_0065	-	hypothetical protein
48	 36.67	+1	75558..75737	-	59	153951542	-	JJD26997_0066	-	hypothetical protein
49	 30.99	0	76032..76886	+	284	153951293	-	JJD26997_0067	-	HmcD domain-containing protein
50	 29.17	0	76871..77470	+	199	153952073	-	JJD26997_0068	-	peptidase family protein
51	 33.58	0	77519..78340	-	273	153951920	fliY	JJD26997_0069	-	flagellar motor switch protein FliY
52	 34.07	0	78358..79437	-	359	153951200	fliM	JJD26997_0070	-	flagellar motor switch protein FliM
53	 33.89	0	79437..80153	-	238	153952569	fliA	JJD26997_0071	-	flagellar biosynthesis sigma factor
54	 26.61	0	80110..80466	-	118	153950944	-	JJD26997_0072	-	hypothetical protein
55	 29.64	0	80485..81351	-	288	153951589	-	JJD26997_0073	-	ParaA family ATPase
56	 30.22	0	81351..82796	-	481	153952395	flhF	JJD26997_0074	-	flagellar biosynthesis regulator FlhF
57	 31.01	0	82807..83280	-	157	153951801	folK	JJD26997_0075	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
58	 35.21	+1	83283..83762	-	159	153952575	aroQ	JJD26997_0076	-	3-dehydroquinate dehydratase
59	 29.92	0	83855..85084	+	409	153952082	-	JJD26997_0077	-	chlorohydrolase
60	 33.11	0	85072..85968	+	298	153951329	sppA	JJD26997_0078	-	signal peptide peptidase SppA, 36K type
61	 24.53	-1	86846..87004	-	52	153951109	-	JJD26997_0081	-	hypothetical protein
62	 30.75	0	87775..88431	-	218	153951058	-	JJD26997_0084	-	hypothetical protein
63	 35.14	+1	88424..89863	-	479	153951992	-	JJD26997_0085	-	iron-sulfur cluster binding protein
64	 33.20	0	89860..90597	-	245	153951675	-	JJD26997_0086	-	hypothetical protein
65	 34.05	0	90721..92403	-	560	153952662	lctP	JJD26997_0087	-	L-lactate permease
66	 22.59	-2	93169..93438	+	89	153951159	-	JJD26997_0089	-	hypothetical protein
67	 34.55	+1	93439..95001	+	520	153951686	cydA	JJD26997_0090	-	cytochrome d ubiquinol oxidase, subunit I
68	 32.00	0	95001..96125	+	374	153950972	cydB	JJD26997_0091	-	cytochrome d ubiquinol oxidase, subunit II
69	 27.87	0	96319..97014	-	231	153951898	-	JJD26997_0092	-	putative aspartate racemase
70	 29.31	0	97130..97825	-	231	153951537	ung	JJD26997_0093	-	uracil-DNA glycosylase
71	 33.19	0	98099..99505	+	468	153952003	aspA	JJD26997_0094	-	aspartate ammonia-lyase
72	 37.10	+1	99531..100859	+	442	153951706	dcuA	JJD26997_0095	-	anaerobic C4-dicarboxylate transporter
73	 36.68	+1	101520..104627	+	1035	153952518	-	JJD26997_0096	-	autotransporter beta-domain-containing protein
74	 33.65	0	104880..105815	+	311	153951573	-	JJD26997_0097	-	putative periplasmic protein
75	 34.95	+1	105974..106282	+	102	153952371	rplU	JJD26997_0098	-	50S ribosomal protein L21
76	 37.25	+1	106293..106547	+	84	153951563	rpmA	JJD26997_0099	-	50S ribosomal protein L27
77	 35.65	+1	106654..107691	+	345	153952548	-	JJD26997_0100	-	GTPase ObgE
78	 19.38	-2	108516..108644	-	42	153951144	-	JJD26997_0103	-	hypothetical protein
79	 33.01	0	108654..109571	+	305	153950956	fmt	JJD26997_0105	-	methionyl-tRNA formyltransferase
80	 29.05	0	109534..110187	+	217	153951936	-	JJD26997_0106	-	biotin--protein ligase
81	 31.04	0	110184..110969	+	261	153952401	-	JJD26997_0107	-	ParA family chromosome partitioning ATPase
82	 26.52	-1	110975..111811	+	278	153952129	-	JJD26997_0108	-	ParB family chromosome partitioning protein
83	 28.64	0	111875..112300	+	141	153951555	-	JJD26997_0109	-	F0F1 ATP synthase subunit B'
84	 26.32	-1	112311..112823	+	170	153952313	-	JJD26997_0110	-	F0F1 ATP synthase subunit B
85	 21.84	-2	112826..113347	+	173	153951608	atpH	JJD26997_0111	-	F0F1 ATP synthase subunit delta
86	 35.52	+1	113361..114866	+	501	153952146	atpA	JJD26997_0112	-	F0F1 ATP synthase subunit alpha
87	 28.25	0	114875..115759	+	294	153952196	atpG	JJD26997_0113	-	F0F1 ATP synthase subunit gamma
88	 35.05	+1	115784..117238	+	484	153951038	atpD	JJD26997_0114	-	F0F1 ATP synthase subunit beta
89	 36.15	+1	117238..117627	+	129	153951408	atpC	JJD26997_0115	-	F0F1 ATP synthase subunit epsilon
90	 29.73	0	117627..118181	+	184	153952561	-	JJD26997_0116	-	MotA/TolQ/ExbB proton channel family protein
91	 27.69	0	118190..118579	+	129	153951220	-	JJD26997_0117	-	TonB system transport protein ExbD, putative
92	 29.49	0	118582..119361	+	259	153952317	-	JJD26997_0118	-	TonB domain-containing protein
93	 29.45	0	119371..120579	+	402	153951205	-	JJD26997_0119	-	translocation protein TolB
94	 32.93	0	120656..121153	+	165	153952154	-	JJD26997_0120	-	peptidoglycan-associated lipoprotein Omp18
95	 26.16	-1	121157..122104	+	315	153950982	-	JJD26997_0121	-	hypothetical protein
96	 38.20	+2	122119..122673	+	184	153951916	slyD	JJD26997_0122	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
97	 32.36	0	122673..123593	+	306	153952364	fabD	JJD26997_0123	-	malonyl CoA-acyl carrier protein transacylase
98	 34.21	0	123593..124279	+	228	153952345	mtnA	JJD26997_0124	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
99	 35.83	+1	124276..125037	+	253	153951034	-	JJD26997_0125	-	PP-loop family protein
100	 26.63	0	125034..125555	+	173	153951597	-	JJD26997_0126	-	putative pyrazinamidase/nicotinamidase
30.44	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.