IslandPath Analysis: Methanoculleus marisnigri JR1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.37   STD DEV: 5.33
Methanoculleus marisnigri JR1, complete genome - 1..2478101
2489 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.60	0	469..1752	+	427	126177953	-	Memar_0001	-	AAA ATPase
2	 65.24	0	1757..2248	+	163	126177954	-	Memar_0002	-	AsnC family transcriptional regulator
3	 64.60	0	2259..3419	+	386	126177955	-	Memar_0003	-	aminotransferase, class I and II
4	 60.93	0	3712..3990	+	92	126177956	-	Memar_0004	-	hypothetical protein
5	 62.82	0	4036..5076	+	346	126177957	-	Memar_0005	-	adenylosuccinate synthetase
6	 61.83	0	5073..5258	+	61	126177958	-	Memar_0006	-	hypothetical protein
7	 64.76	0	5267..5791	+	174	126177959	-	Memar_0007	-	hypothetical protein
8	 68.40	+1	5770..6690	+	306	126177960	-	Memar_0008	-	cobalamin biosynthesis protein CobD
9	 66.44	0	6696..7592	+	298	126177961	-	Memar_0009	-	pyridoxine biosynthesis protein
10	 69.08	+1	7582..8160	+	192	126177962	-	Memar_0010	-	glutamine amidotransferase subunit PdxT
11	 66.67	0	8169..8531	-	120	126177963	-	Memar_0011	-	regulatory protein, ArsR
12	 54.02	-1	8792..9724	+	310	126177964	-	Memar_0012	-	hypothetical protein
13	 61.98	0	9940..10323	-	127	126177965	-	Memar_0013	-	regulatory protein, ArsR
14	 52.03	-1	10499..10744	+	81	126177966	-	Memar_0014	-	hypothetical protein
15	 66.67	0	10842..11747	+	301	126177967	-	Memar_0015	-	permease
16	 64.54	0	11805..12884	+	359	126177968	-	Memar_0016	-	permease
17	 61.85	0	12895..13164	+	89	126177969	-	Memar_0017	-	hypothetical protein
18	 60.68	0	13161..13394	+	77	126177970	-	Memar_0018	-	redox-active disulfide protein 2
19	 60.49	0	13428..13670	+	80	126177971	-	Memar_0019	-	redox-active disulfide protein 2
20	 65.15	0	13672..14526	+	284	126177972	-	Memar_0020	-	hypothetical protein
21	 65.32	0	14670..15635	+	321	126177973	-	Memar_0021	-	daunorubicin resistance ABC transporter ATPase subunit
22	 66.01	0	15632..16387	+	251	126177974	-	Memar_0022	-	ABC-2 type transporter
23	 64.89	0	16441..16833	+	130	126177975	-	Memar_0023	-	hypothetical protein
24	 65.37	0	17082..18164	+	360	126177976	-	Memar_0024	-	periplasmic binding protein
25	 66.67	0	18172..18813	+	213	126177977	-	Memar_0025	-	methyltransferase type 11
26	 68.11	+1	18816..20552	+	578	126177978	-	Memar_0026	-	radical SAM domain-containing protein
27	 62.35	0	20549..21382	-	277	126177979	-	Memar_0027	-	ABC transporter-related protein
28	 63.10	0	21379..22443	-	354	126177980	-	Memar_0028	-	transport system permease protein
29	 61.69	0	22929..24014	+	361	126177981	-	Memar_0029	-	periplasmic binding protein
30	 63.60	0	24032..25138	+	368	126177982	-	Memar_0030	-	methyltransferase type 12
31	 65.60	0	25138..25977	+	279	126177983	-	Memar_0031	-	hypothetical protein
32	 57.67	0	25986..26852	+	288	126177984	-	Memar_0032	-	methyltransferase type 11
33	 55.78	-1	27204..28259	+	351	126177985	-	Memar_0033	-	periplasmic binding protein
34	 71.45	+1	28607..29296	-	229	126177986	-	Memar_0034	-	nucleotide kinase-like protein
35	 67.56	0	29525..30196	+	223	126177987	-	Memar_0035	-	hypothetical protein
36	 62.76	0	30235..30720	+	161	126177988	-	Memar_0036	-	peptidylprolyl isomerase
37	 69.21	+1	30731..31201	+	156	126177989	-	Memar_0037	-	ribonuclease III
38	 71.98	+1	31185..32483	-	432	126177990	-	Memar_0038	-	major facilitator transporter
39	 67.67	0	32489..34378	-	629	126177991	-	Memar_0039	-	acetate--CoA ligase
40	 61.01	0	34686..39425	-	1579	126177992	-	Memar_0040	-	cobaltochelatase
41	 61.40	0	39568..39909	-	113	126177993	-	Memar_0041	-	hypothetical protein
42	 61.19	0	39906..40526	-	206	126177994	-	Memar_0042	-	MotA/TolQ/ExbB proton channel
43	 62.20	0	40523..41239	-	238	126177995	-	Memar_0043	-	transporter-like protein
44	 64.64	0	41423..43447	-	674	126177996	hppA	Memar_0044	-	membrane-bound proton-translocating pyrophosphatase
45	 64.25	0	43536..44939	-	467	126177997	-	Memar_0045	-	DNA polymerase II small subunit
46	 64.57	0	45156..45824	+	222	126177998	-	Memar_0046	-	peptidase S26B, signal peptidase
47	 66.39	0	45850..46938	+	362	126177999	-	Memar_0047	-	radical SAM domain-containing protein
48	 64.76	0	47667..48770	+	367	126178000	-	Memar_0048	-	radical SAM domain-containing protein
49	 51.23	-2	48888..49049	+	53	126178001	-	Memar_0049	-	hypothetical protein
50	 61.23	0	49126..49677	-	183	126178002	-	Memar_0050	-	NADPH-dependent FMN reductase
51	 67.54	0	49674..50129	-	151	126178003	-	Memar_0051	-	hypothetical protein
52	 67.33	0	50122..50724	-	200	126178004	-	Memar_0052	-	beta-lactamase domain-containing protein
53	 70.96	+1	50759..52039	+	426	126178005	-	Memar_0053	-	thiamine biosynthesis protein ThiC
54	 65.08	0	52047..52487	-	146	126178006	-	Memar_0054	-	protein tyrosine phosphatase
55	 67.18	0	52570..52962	-	130	126178007	-	Memar_0055	-	phosphoribosylaminoimidazole carboxylase
56	 66.84	0	53098..54228	+	376	126178008	-	Memar_0056	-	aminotransferase, class V
57	 66.67	0	54225..54686	+	153	126178009	-	Memar_0057	-	riboflavin synthase
58	 61.27	0	54744..55151	+	135	126178010	ribH	Memar_0058	-	riboflavin synthase subunit beta
59	 66.93	0	55148..56278	+	376	126178011	-	Memar_0059	-	aspartate aminotransferase
60	 64.83	0	56275..57963	-	562	126178012	-	Memar_0060	-	TPR repeat-containing protein
61	 64.43	0	58163..58834	+	223	126178013	-	Memar_0061	-	DNA repair protein RadC
62	 59.82	0	59141..59797	+	218	126178014	-	Memar_0062	-	hypothetical protein
63	 68.15	+1	59799..60941	+	380	126178015	-	Memar_0063	-	hypothetical protein
64	 63.68	0	60947..61615	+	222	126178016	-	Memar_0064	-	ABC transporter-related protein
65	 64.31	0	61612..62757	+	381	126178017	-	Memar_0065	-	hypothetical protein
66	 65.74	0	62762..62977	-	71	126178018	-	Memar_0066	-	hypothetical protein
67	 66.67	0	63009..63683	-	224	126178019	-	Memar_0067	-	hypothetical protein
68	 65.32	0	63705..64151	-	148	126178020	-	Memar_0068	-	hypothetical protein
69	 67.01	0	64263..64847	-	194	126178021	-	Memar_0069	-	membrane-bound metal-dependent hydrolase
70	 64.75	0	64988..66346	+	452	126178022	-	Memar_0070	-	tryptophan synthase subunit beta
71	 69.22	+1	66603..67856	+	417	126178023	-	Memar_0071	-	anthranilate synthase
72	 68.39	+1	67856..68434	+	192	126178024	-	Memar_0072	-	glutamine amidotransferase of anthranilate synthase
73	 73.65	+2	68431..69447	+	338	126178025	-	Memar_0073	-	anthranilate phosphoribosyltransferase
74	 67.86	+1	69444..70199	+	251	126178026	-	Memar_0074	-	indole-3-glycerol-phosphate synthase
75	 69.44	+1	70196..70771	+	191	126178027	-	Memar_0075	-	phosphoribosylanthranilate isomerase
76	 68.54	+1	70768..71940	+	390	126178028	-	Memar_0076	-	tryptophan synthase subunit beta
77	 71.83	+1	71937..72749	+	270	126178029	-	Memar_0077	-	tryptophan synthase, alpha subunit
78	 70.74	+1	72980..74083	+	367	126178030	-	Memar_0078	-	ATP-NAD/AcoX kinase
79	 65.60	0	73919..75697	-	592	126178031	-	Memar_0079	-	Na+/Pi-cotransporter
80	 69.90	+1	75780..76304	-	174	126178032	-	Memar_0080	-	hypothetical protein
81	 69.14	+1	76371..76937	-	188	126178033	-	Memar_0081	-	hypothetical protein
82	 59.05	0	77121..77330	-	69	126178034	-	Memar_0082	-	hypothetical protein
83	 61.33	0	77334..77558	-	74	126178035	-	Memar_0083	-	hypothetical protein
84	 59.77	0	78157..78678	-	173	126178036	-	Memar_0084	-	hypothetical protein
85	 55.62	-1	78699..79205	-	168	126178037	-	Memar_0085	-	hypothetical protein
86	 62.75	0	79554..80522	-	322	126178038	-	Memar_0086	-	ABC-2 type transporter
87	 51.48	-2	81016..81792	-	258	126178039	-	Memar_0087	-	hypothetical protein
88	 56.16	-1	81807..82415	-	202	126178040	-	Memar_0088	-	hypothetical protein
89	 62.07	0	82962..83222	-	86	126178041	-	Memar_0089	-	hypothetical protein
90	 61.84	0	83594..84277	+	227	126178042	-	Memar_0090	-	hypothetical protein
91	 60.54	0	84319..85053	-	244	126178043	-	Memar_0091	-	hypothetical protein
92	 53.39	-1	85094..85447	-	117	126178044	-	Memar_0092	-	hypothetical protein
93	 49.93	-2	86001..87398	+	465	126178045	-	Memar_0093	-	peptidase M12B, propeptide
94	 51.97	-1	87382..87837	+	151	126178046	-	Memar_0094	-	hypothetical protein
95	 64.00	0	88426..89589	+	387	126178047	-	Memar_0095	-	hypothetical protein
96	 58.57	0	89676..90095	+	139	126178048	-	Memar_0096	-	MarR family transcriptional regulator
97	 66.25	0	90152..92533	+	793	126178049	-	Memar_0097	-	ATP-dependent protease La
98	 60.61	0	92740..93498	+	252	126178050	-	Memar_0098	-	hypothetical protein
99	 61.19	0	93498..93935	+	145	126178051	-	Memar_0099	-	hypothetical protein
100	 64.88	0	93959..94405	+	148	126178052	-	Memar_0100	-	hypothetical protein
62.37	MEAN

5.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.