IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis str. Al Hakam



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.36
Bacillus thuringiensis str. Al Hakam, complete genome - 1..5257091
4736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.48	0	351..1748	+	465	118475779	dnaA	BALH_0001	-	chromosomal replication initiation protein
2	 32.46	0	1927..3066	+	379	118475780	dnaN	BALH_0002	-	DNA polymerase III subunit beta
3	 35.56	0	3182..3406	+	74	118475781	-	BALH_0003	-	hypothetical protein
4	 34.49	0	3419..4546	+	375	118475782	recF	BALH_0004	-	recombination protein F
5	 37.00	0	4570..6507	+	645	118475783	gyrB	BALH_0005	-	DNA gyrase subunit B
6	 36.61	0	6593..9067	+	824	118475784	gyrA	BALH_0006	-	DNA gyrase subunit A
7	 33.73	0	14356..15357	-	333	118475785	-	BALH_0008	-	hypothetical protein
8	 38.61	0	15458..16936	+	492	118475786	guaB	BALH_0009	-	inositol-5-monophosphate dehydrogenase
9	 36.03	0	17026..18360	+	444	118475787	dacA	BALH_0010	-	D-alanyl-D-alanine carboxypeptidase A
10	 42.95	+2	18515..19408	+	297	118475788	pdxA	BALH_0011	-	pyridoxine biosynthesis protein
11	 40.23	+1	19409..20017	+	202	118475789	pdxT	BALH_0012	-	glutamine amidotransferase subunit PdxT
12	 38.43	0	20345..21619	+	424	118475790	serS	BALH_0013	-	seryl-tRNA synthetase
13	 34.78	0	21876..22427	+	183	118475791	-	BALH_0014	-	hypothetical protein
14	 36.02	0	22463..23131	-	222	118475792	dck	BALH_0015	-	deoxynucleoside kinase
15	 35.63	0	23134..23787	-	217	118475793	dgk	BALH_0016	-	deoxyguanosine kinase
16	 30.37	-1	23895..24434	-	179	118475794	pncA	BALH_0017	-	nicotinamidase
17	 37.52	0	24542..25042	+	166	118475795	-	BALH_0018	-	tRNA-adenosine deaminase
18	 38.84	0	25519..27207	+	562	118475796	dnaX	BALH_0019	-	DNA polymerase III subunits gamma and tau
19	 36.97	0	27230..27559	+	109	118475797	-	BALH_0020	-	hypothetical protein
20	 39.53	+1	27574..28170	+	198	118475798	recR	BALH_0021	-	recombination protein RecR
21	 33.33	0	28185..28406	+	73	118475799	-	BALH_0022	-	hypothetical protein
22	 31.85	-1	28555..28890	+	111	118475800	bofA	BALH_0023	-	sigma-K factor processing regulatory protein
23	 35.16	0	34563..35984	+	473	118475801	cad	BALH_0025	-	lysine decarboxylase
24	 36.04	0	35986..36612	+	208	118475802	tdk	BALH_0026	-	thymidylate kinase
25	 37.09	0	36648..37631	+	327	118475803	holB	BALH_0027	-	DNA polymerase III subunit delta'
26	 36.32	0	37628..38464	+	278	118475804	-	BALH_0028	-	signal peptidase-like protein
27	 33.06	0	38464..38829	+	121	118475805	-	BALH_0029	-	DNA replication intiation control protein YabA
28	 32.93	0	38950..39690	+	246	118475806	-	BALH_0030	-	methyltransferase
29	 32.75	0	39626..39967	+	113	118475807	-	BALH_0031	-	GIY-YIG nuclease superfamily protein
30	 35.16	0	39936..40811	+	291	118475808	cobA	BALH_0032	-	uroporphyrin-III C-methyltransferase
31	 32.55	0	40832..41212	-	126	118475809	abrB	BALH_0033	-	AbrB family transcriptional regulator
32	 36.12	0	41580..43589	+	669	118475810	metS	BALH_0034	-	methionyl-tRNA synthetase
33	 37.50	0	43755..44522	+	255	118475811	-	BALH_0035	-	TatD family deoxyribonuclease
34	 38.25	0	44725..45294	+	189	118475812	rnmV	BALH_0036	-	ribonuclease M5
35	 35.61	0	45291..46169	+	292	118475813	ksgA	BALH_0037	-	dimethyladenosine transferase
36	 37.38	0	46280..47143	+	287	118475814	-	BALH_0038	-	peptidase
37	 36.78	0	47382..47642	+	86	118475815	veg	BALH_0039	-	veg protein
38	 38.34	0	48101..48979	+	292	118475816	ispE	BALH_0040	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
39	 37.34	0	49034..49882	+	282	118475817	purR	BALH_0041	-	purine operon repressor
40	 34.90	0	49996..50379	+	127	118475818	-	BALH_0042	-	endoribonuclease L-PSP
41	 40.82	+1	50532..50825	+	97	162382789	spoVG	BALH_0043	-	regulatory protein SpoVG
42	 38.41	0	51132..52529	+	465	118475820	gcaD	BALH_0044	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
43	 37.32	0	52548..53501	+	317	118475821	prs	BALH_0045	-	ribose-phosphate pyrophosphokinase
44	 34.44	0	53502..54134	+	210	118475822	spoVC	BALH_0046	-	peptidyl-tRNA hydrolase
45	 32.89	0	54205..54429	+	74	118475823	-	BALH_0047	-	hypothetical protein
46	 35.62	0	54442..58065	+	1207	118475824	mfd	BALH_0048	-	transcription-repair coupling factor
47	 36.31	0	58201..58737	+	178	118475825	spoVT	BALH_0049	-	AbrB family transcriptional regulator
48	 35.08	0	58968..60569	+	533	118475826	spoVB	BALH_0051	-	stage V sporulation protein B
49	 37.10	0	60582..62042	+	486	118475827	mazG	BALH_0053	-	fused tetrapyrrole methylase domain/nucleotide pyrophosphohydrolase domain-containing protein
50	 34.27	0	62012..62332	+	106	118475828	hslR	BALH_0054	-	heat shock protein 15
51	 33.94	0	62373..62699	+	108	118475829	-	BALH_0055	-	hypothetical protein
52	 32.42	0	62696..63349	+	217	118475830	-	BALH_0056	-	hypothetical protein
53	 34.84	0	63307..63705	+	132	118475831	divIC	BALH_0057	-	cell division protein
54	 42.44	+2	63793..64275	+	160	118475832	-	BALH_0058	-	hypothetical protein
55	 36.97	0	64854..67325	+	823	118475833	spoIIE	BALH_0060	-	serine/threonine specific protein phosphatase
56	 36.52	0	67547..68989	+	480	118475834	mesJ	BALH_0061	-	cell cycle protein
57	 34.81	0	68986..69528	+	180	118475835	hpt	BALH_0062	-	hypoxanthine phosphoribosyltransferase
58	 40.17	+1	69614..71515	+	633	118475836	ftsH	BALH_0063	-	FtsH-2 peptidase
59	 38.02	0	71740..72528	+	262	118475837	-	BALH_0064	-	pantothenate kinase
60	 39.73	+1	72535..73410	+	291	118475838	hslO	BALH_0065	-	Hsp33-like chaperonin
61	 39.92	+1	73497..74438	+	313	118475839	cysK	BALH_0066	-	cysteine synthase
62	 38.39	0	74614..76056	+	480	118475840	pabB	BALH_0067	-	aminodeoxychorismate synthase, subunit I
63	 40.37	+1	76053..76649	+	198	118475841	pabA	BALH_0068	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
64	 35.40	0	76643..77515	+	290	118475842	pabC	BALH_0069	-	4-amino-4-deoxychorismate lyase
65	 39.37	+1	77457..78350	+	297	118475843	folP	BALH_0070	-	dihydropteroate synthase
66	 36.36	0	78351..78713	+	120	118475844	folB	BALH_0071	-	dihydroneopterin aldolase
67	 34.11	0	78710..79225	+	171	118475845	folK	BALH_0072	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
68	 39.22	+1	79177..79380	+	67	118475846	-	BALH_0073	-	transcriptional regulator
69	 39.31	+1	79383..80402	+	339	118475847	-	BALH_0074	-	NifR3 family TIM-barrel protein
70	 36.80	0	80562..82061	+	499	118475848	lysS	BALH_0075	-	lysyl-tRNA synthetase
71	 33.33	0	93139..93600	+	153	118475849	ctsR	BALH_0078	-	transcriptional regulator
72	 36.01	0	93762..94322	+	186	118475850	-	BALH_0079	-	nucleotide excision repair protein
73	 34.87	0	94285..95391	+	368	118475851	karG	BALH_0080	-	ATP:guanido phosphotransferase
74	 39.08	+1	95414..97849	+	811	118475852	clpC	BALH_0081	-	negative regulator of genetic competence clpC/mecB
75	 39.43	+1	97946..99322	+	458	118475853	radA	BALH_0082	-	DNA repair protein RadA
76	 37.34	0	99326..100399	+	357	118475854	-	BALH_0083	-	DNA integrity scanning protein DisA
77	 34.86	0	100560..101669	+	369	118475855	-	BALH_0084	-	PilT domain-containing protein
78	 39.21	+1	101686..102366	+	226	118475856	ispD	BALH_0085	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
79	 37.74	0	102481..102957	+	158	118475857	ispF	BALH_0086	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
80	 37.16	0	103014..104504	+	496	118475858	gltX	BALH_0087	-	glutamyl-tRNA synthetase
81	 37.54	0	104935..105600	+	221	118475859	cysE	BALH_0088	-	serine O-acetyltransferase
82	 36.77	0	105581..106978	+	465	118475860	cysS	BALH_0089	-	cysteinyl-tRNA synthetase
83	 38.03	0	106963..107388	+	141	118475861	-	BALH_0090	-	hypothetical protein
84	 37.37	0	107385..108128	+	247	118475862	-	BALH_0091	-	tRNA/rRNA methyltransferase
85	 38.21	0	108132..108644	+	170	118475863	-	BALH_0092	-	hypothetical protein
86	 36.07	0	108712..109368	+	218	118475864	sigH	BALH_0093	-	RNA polymerase factor sigma-70
87	 37.45	0	109990..110523	+	177	118475865	nusG	BALH_0094	-	transcription antitermination protein NusG
88	 43.22	+2	110682..111116	+	144	118475866	rplK	BALH_0095	-	50S ribosomal protein L11
89	 41.15	+1	111207..111986	+	259	118475867	rplA	BALH_0096	-	50S ribosomal protein L1
90	 40.59	+1	112141..112719	+	192	118475868	rplJ	BALH_0097	-	50S ribosomal protein L10
91	 39.17	+1	112787..113146	+	119	118475869	rplL	BALH_0098	-	50S ribosomal protein L7/L12
92	 38.16	0	113181..113822	+	213	118475870	-	BALH_0099	-	16S rRNA m(2)G 1207 methyltransferase
93	 41.83	+1	114107..117649	+	1180	118475871	rpoB	BALH_0100	-	DNA-directed RNA polymerase subunit beta
94	 40.39	+1	117687..121298	+	1203	118475872	rpoC	BALH_0101	-	DNA-directed RNA polymerase subunit beta'
95	 36.88	0	121379..121660	+	93	118475873	-	BALH_0102	-	hypothetical protein
96	 40.43	+1	121775..122197	+	140	162382788	rpsL	BALH_0103	-	30S ribosomal protein S12
97	 42.46	+2	122227..122697	+	156	118475875	rpsG	BALH_0104	-	30S ribosomal protein S7
98	 42.52	+2	122884..124983	+	699	118475876	fusA	BALH_0105	-	elongation factor G
99	 43.94	+2	125101..126288	+	395	118475877	tuf	BALH_0106	-	elongation factor Tu
100	 39.16	+1	126687..126995	+	102	118475878	rpsJ	BALH_0107	-	30S ribosomal protein S10
35.66	MEAN

3.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.