IslandPath Analysis: Burkholderia thailandensis E264



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.31   STD DEV: 4.35
Burkholderia thailandensis E264 chromosome I, complete sequence - 1..3809201
3276 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.30	0	1..1248	-	415	83719120	-	BTH_I0001	-	carboxylate-amine ligase
2	 65.19	0	1161..2375	-	404	83721313	-	BTH_I0002	-	sodium/hydrogen exchanger family protein
3	 71.07	0	3101..5074	-	657	83720591	mnmC	BTH_I0003	-	5-methylaminomethyl-2-thiouridine methyltransferase
4	 60.37	-1	5354..5734	+	126	83719600	-	BTH_I0004	-	DNA-binding protein HU-alpha
5	 66.47	0	5838..7397	-	519	83719674	-	BTH_I0005	-	cobalamin synthesis protein/P47K family protein
6	 62.44	-1	7470..7919	-	149	83718965	-	BTH_I0006	-	BapC protein
7	 66.13	0	8351..10585	+	744	83720377	-	BTH_I0007	-	general secretion pathway protein D
8	 69.48	0	10582..12075	+	497	83718589	-	BTH_I0008	-	general secretion pathway protein E
9	 69.29	0	12080..13297	+	405	83721515	gspF	BTH_I0009	-	general secretion pathway protein F
10	 71.53	0	13375..13785	-	136	83720261	-	BTH_I0010	-	GspC
11	 62.25	-1	13943..14395	+	150	83718881	gspG	BTH_I0011	-	general secretion pathway protein G
12	 70.90	0	14439..15029	+	196	83718435	-	BTH_I0012	-	general secretion pathway protein H
13	 70.37	0	15032..15436	+	134	83720909	-	BTH_I0013	-	general secretory pathway protein I
14	 70.92	0	15414..16142	+	242	83721506	-	BTH_I0014	-	general secretory pathway protein J
15	 71.13	0	16144..17397	+	417	83718959	gspK	BTH_I0015	-	general secretion pathway protein K
16	 73.38	+1	17464..18834	+	456	83719668	-	BTH_I0016	-	general secretion pathway protein L (GspL)
17	 70.22	0	18831..19337	+	168	83721070	-	BTH_I0017	-	general secretion pathway protein M
18	 73.23	+1	19376..20167	+	263	83718594	-	BTH_I0018	-	general secretory pathway protein N
19	 72.65	+1	20337..21956	-	539	83719194	-	BTH_I0019	-	RND efflux system outer membrane lipoprotein
20	 73.08	+1	22170..22481	-	103	83718605	-	BTH_I0020	-	hypothetical protein
21	 69.41	0	22608..23153	+	181	83718884	-	BTH_I0021	-	MarR family transcriptional regulator
22	 66.73	0	23301..24863	+	520	83721667	-	BTH_I0022	-	EmrB/QacA family drug resistance transporter
23	 69.05	0	25087..26010	-	307	83720703	-	BTH_I0023	-	LysR family transcriptional regulator
24	 75.11	+1	26150..26599	+	149	83719078	-	BTH_I0024	-	LrgA family protein
25	 68.60	0	26668..27390	+	240	83719971	-	BTH_I0025	-	hypothetical protein
26	 66.85	0	27944..28486	+	180	83720504	fliL	BTH_I0026	-	flagellar basal body-associated protein FliL
27	 63.06	0	28509..29507	+	332	83720285	fliM	BTH_I0027	-	flagellar motor switch protein FliM
28	 69.44	0	29566..29997	+	143	83721171	-	BTH_I0028	-	flagellar motor switch protein FliN
29	 77.19	+2	29994..30668	+	224	83718483	-	BTH_I0029	-	flagellar biosynthesis protein
30	 65.88	0	30739..31500	+	253	161723156	fliP	BTH_I0030	-	flagellar biosynthesis protein FliP
31	 68.13	0	31526..31798	+	90	83720940	fliQ	BTH_I0031	-	flagellar biosynthesis protein FliQ
32	 68.20	0	31911..32693	+	260	83721282	fliR	BTH_I0032	-	flagellar biosynthetic protein FliR
33	 69.29	0	32827..33321	-	164	83719057	-	BTH_I0033	-	MerR family transcriptional regulator
34	 72.44	+1	33316..34233	+	305	83720500	-	BTH_I0034	-	methyltransferase
35	 66.07	0	34432..35445	+	337	83719409	-	BTH_I0035	-	hypothetical protein
36	 65.41	0	35552..36349	+	265	83720564	-	BTH_I0036	-	ABC transporter, ATP-binding protein
37	 66.79	0	36449..37228	+	259	83720884	-	BTH_I0037	-	ABC transporter, permease protein
38	 70.51	0	37305..38684	+	459	83718780	-	BTH_I0038	-	sensor histidine kinase
39	 67.26	0	38695..39372	+	225	83719158	-	BTH_I0039	-	DNA-binding response regulator
40	 65.25	0	39693..40820	+	375	83719583	-	BTH_I0040	-	porin
41	 67.94	0	41277..43325	+	682	83718634	-	BTH_I0041	-	type III DNA modification methyltransferase
42	 67.39	0	43366..46395	+	1009	83721135	-	BTH_I0042	-	type III restriction-modification system, res subunit
43	 66.39	0	46764..47864	+	366	83720391	-	BTH_I0043	-	outer membrane porin OpcP
44	 67.08	0	48240..49199	+	319	83719725	-	BTH_I0044	-	AraC family transcriptional regulator
45	 71.72	+1	49318..50049	-	243	83719476	-	BTH_I0045	-	branched-chain amino acid ABC transporter, ATP-binding protein, putative
46	 70.95	0	50104..50826	-	240	83721574	-	BTH_I0046	-	branched-chain amino acid ABC transporter, ATP-binding protein
47	 73.33	+1	50823..51872	-	349	83720544	-	BTH_I0047	-	branched-chain amino acid ABC transporter, permease protein, putative
48	 72.83	+1	51869..52663	-	264	83720013	-	BTH_I0048	-	branched chain amino acid ABC transporter permease
49	 66.83	0	52752..54011	-	419	83719360	-	BTH_I0049	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
50	 69.52	0	54208..55713	-	501	83719867	-	BTH_I0050	-	phenylacetaldehyde dehydrogenase
51	 65.24	0	55768..56187	-	139	83720182	-	BTH_I0051	-	hypothetical protein
52	 67.55	0	56171..56962	-	263	83720343	-	BTH_I0052	-	hypothetical protein
53	 73.43	+1	57002..57799	-	265	83719428	-	BTH_I0053	-	short chain dehydrogenase/reductase family oxidoreductase
54	 71.15	0	57884..59554	-	556	83718932	-	BTH_I0054	-	GMC oxidoreductase
55	 64.91	0	59895..60236	+	113	83720084	-	BTH_I0055	-	PadR family transcriptional regulator
56	 70.23	0	60233..61411	+	392	83720668	-	BTH_I0056	-	hypothetical protein
57	 69.19	0	62099..63088	-	329	83719542	-	BTH_I0057	-	fatty acid desaturase
58	 72.04	+1	63118..63954	-	278	83718619	-	BTH_I0058	-	hypothetical protein
59	 71.28	0	64266..65480	-	404	83720833	-	BTH_I0059	-	AraC family transcription regulator
60	 66.67	0	65479..66615	+	378	83721003	-	BTH_I0060	-	acyl-CoA dehydrogenase
61	 72.06	+1	66869..68371	+	500	83720390	-	BTH_I0061	-	acetyl-CoA acetyltransferase
62	 70.72	0	68384..70507	+	707	83719271	-	BTH_I0062	-	fatty oxidation complex, alpha subunit
63	 73.54	+1	70662..70850	-	62	83718601	-	BTH_I0063	-	hypothetical protein
64	 72.13	+1	70850..71983	+	377	83718526	-	BTH_I0064	-	alpha-methylacyl-CoA racemase
65	 67.27	0	72059..72883	-	274	83720831	-	BTH_I0065	-	hypothetical protein
66	 65.58	0	72952..73413	-	153	83721471	-	BTH_I0066	-	hypothetical protein
67	 66.67	0	73696..73812	+	38	83719382	-	BTH_I0067	-	hypothetical protein
68	 67.12	0	73967..74407	+	146	83720828	-	BTH_I0068	-	hypothetical protein
69	 68.94	0	74394..74789	+	131	83719910	-	BTH_I0069	-	putative lipoprotein
70	 75.30	+1	75029..75781	-	250	83719748	-	BTH_I0070	-	transmembrane regulator PrtR
71	 68.60	0	75778..76293	-	171	83718744	-	BTH_I0071	-	ECF subfamily RNA polymerase sigma factor
72	 71.18	0	76454..77539	+	361	83720133	-	BTH_I0072	-	catalase
73	 64.20	0	77536..78063	+	175	83720035	-	BTH_I0073	-	cytochrome b561, putative
74	 52.75	-2	79206..79715	-	169	83719862	-	BTH_I0074	-	transposase, putative
75	 53.83	-2	80897..82462	+	521	83719315	-	BTH_I0075	-	recombinase
76	 56.07	-2	82492..83133	+	213	83720211	-	BTH_I0076	-	stage 0 sporulation protein J, putative
77	 60.78	-1	83375..83782	-	135	83720911	-	BTH_I0077	-	hypothetical protein
78	 66.93	0	84413..85573	+	386	83719651	-	BTH_I0078	-	hypothetical protein
79	 62.82	-1	85638..85793	+	51	83718969	-	BTH_I0079	-	putative lipoprotein
80	 60.66	-1	86137..86319	-	60	83719472	-	BTH_I0080	-	hypothetical protein
81	 56.75	-2	86443..87027	+	194	83720587	speG	BTH_I0081	-	spermidine n(1)-acetyltransferase
82	 62.36	-1	87513..87860	+	115	83721286	-	BTH_I0082	-	hypothetical protein
83	 68.12	0	87880..88635	+	251	83718395	-	BTH_I0083	-	YaeQ family protein
84	 67.15	0	88763..89179	-	138	83719952	-	BTH_I0084	-	glyoxalase family protein
85	 70.68	0	89582..90676	+	364	83720827	-	BTH_I0085	-	ADA regulatory protein
86	 74.13	+1	90583..91614	+	343	83721464	-	BTH_I0086	-	DNA-3-methyladenine glycosylase II
87	 67.82	0	91752..93398	+	548	83719941	gshA-1	BTH_I0087	-	glutamate--cysteine ligase
88	 69.28	0	93414..94865	-	483	83720670	-	BTH_I0088	-	RNA polymerase sigma factor RpoD
89	 68.31	0	95108..95533	-	141	83720160	-	BTH_I0089	-	hypothetical protein
90	 65.45	0	96449..97024	-	191	83719130	-	BTH_I0090	-	hypothetical protein
91	 67.69	0	97240..97533	+	97	83718701	-	BTH_I0091	-	PBSX family phage portal protein
92	 58.51	-2	98003..98578	+	191	83719554	-	BTH_I0092	-	Fels-2 prophage protein
93	 55.46	-2	98679..99695	+	338	83719741	-	BTH_I0093	-	hypothetical protein
94	 61.63	-1	100027..101376	+	449	83720438	-	BTH_I0094	-	Phage integrase
95	 62.39	-1	101445..102239	+	264	83721017	-	BTH_I0095	-	hypothetical protein
96	 60.08	-1	102222..104012	-	596	83721360	-	BTH_I0096	-	hypothetical protein
97	 56.67	-2	107166..109325	+	719	83719966	-	BTH_I0097	-	hypothetical protein
98	 55.27	-2	109304..109996	+	230	83720738	-	BTH_I0098	-	hypothetical protein
99	 54.65	-2	110138..111244	-	368	83718766	-	BTH_I0099	-	hypothetical protein
100	 59.09	-1	112209..113489	+	426	83719021	-	BTH_I0100	-	hypothetical protein
67.31	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.