IslandPath Analysis: Mycoplasma mycoides subsp. mycoides SC str. PG1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 23.80   STD DEV: 3.70
Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome - 1..1211703
1016 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 23.33	0	1..1440	+	479	42560561	dnaA	MSC_0001	-	chromosomal replication initiator protein DnaA
2	 20.92	0	1602..2729	+	375	42560562	dnaN	MSC_0002	-	DNA polymerase III, beta chain
3	 18.91	-1	2766..3299	+	177	42560563	-	MSC_0003	-	primase-related protein
4	 20.72	0	3299..4099	+	266	42560564	ksgA	MSC_0004	-	dimethyladenosine transferase
5	 21.52	0	4156..5247	+	363	42560565	-	MSC_0005	-	putative purine NTPase
6	 28.35	+1	5607..7511	+	634	42560566	gyrB	MSC_0006	-	DNA gyrase subunit B
7	 26.87	0	7527..10031	+	834	42560567	gyrA	MSC_0007	-	DNA gyrase subunit A
8	 29.75	+1	10082..11059	-	325	42560568	rbsC-2	MSC_0008	-	ribose/galactose ABC transporter permease
9	 22.31	0	11059..13626	-	855	42560569	rbsC-1	MSC_0009	-	ribose/galactose ABC transporter permease
10	 27.09	0	13616..15232	-	538	42560570	rbsA	MSC_0010	-	ribose/galactose ABC transporter ATP-binding protein
11	 27.83	+1	15235..16887	-	550	42560571	rbsB	MSC_0011	-	ribose/galactose ABC transporter substrate-binding protein
12	 23.20	0	17078..18607	-	509	42560572	metS	MSC_0012	-	methionyl-tRNA synthetase
13	 23.56	0	18811..20457	+	548	42560573	lpp	MSC_0013	-	prolipoprotein
14	 25.27	0	20490..22088	+	532	42560574	p72	MSC_0014	-	immunodominant protein P72 precursor
15	 24.74	0	22141..23001	-	286	42560575	tnpB	MSC_0015	-	IS1296SQ transposase protein B
16	 23.94	0	23010..23552	-	180	42560576	tnpA	MSC_0016	-	IS1296SQ transposase protein A
17	 19.15	-1	23628..24614	-	328	42560577	mtlD	MSC_0017	-	mannitol-1-phosphate 5-dehydrogenase
18	 19.55	-1	24615..25412	-	265	42560578	-	MSC_0018	-	RpiR family transcriptional regulator
19	 21.68	0	25446..25874	-	142	42560579	EIIA-mtl	MSC_0019	-	PTS system, mannitol-permease IIA component
20	 25.82	0	25874..26632	-	252	42560580	srlD	MSC_0020	-	sorbitol-6-phosphate dehydrogenase
21	 27.32	0	26632..28194	-	520	42560581	EIIBC-mtl	MSC_0021	-	PTS system, mannitol-permease IIBC component
22	 22.99	0	28445..28705	-	86	42560582	-	MSC_0022	-	hypothetical protein
23	 25.82	0	28675..29286	-	203	42560583	recG	MSC_0023	-	DNA recombinase recG
24	 26.83	0	29333..29824	-	163	42560584	-	MSC_0024	-	hypothetical protein
25	 25.00	0	30178..30405	-	75	42560585	rpsR	MSC_0025	-	30S ribosomal protein S18
26	 28.12	+1	30425..30865	-	146	42560586	ssb	MSC_0026	-	single-strand binding protein
27	 24.64	0	30877..31290	-	137	42560587	rpsF	MSC_0027	-	30S ribosomal protein S6
28	 23.81	0	31496..31705	-	69	42560588	csp	MSC_0028	-	cold shock protein
29	 27.17	0	31891..32490	+	199	42560589	acpD	MSC_0029	-	Acyl carrier protein phosphodiesterase
30	 27.44	0	32527..33561	-	344	42560590	abc	MSC_0030	-	ABC transporter ATP-binding protein
31	 21.12	0	33609..34484	-	291	42560591	hsp33	MSC_0031	-	HEAT shock protein (33 kDa chaperonin)
32	 21.60	0	34684..37836	-	1050	42560592	-	MSC_0032	-	hypothetical protein
33	 23.39	0	37983..43370	+	1795	42560593	-	MSC_0033	-	permease
34	 27.05	0	43808..44794	+	328	42560594	ldh	MSC_0034	-	D-lactate dehydrogenase
35	 28.09	+1	44813..45937	+	374	42560595	-	MSC_0035	-	malate permease
36	 29.34	+1	46289..47215	+	308	42560596	-	MSC_0036	-	hypothetical protein
37	 25.14	0	47223..47576	+	117	42560597	-	MSC_0037	-	hypothetical protein
38	 26.22	0	47780..49453	+	557	42560598	tnp	MSC_0038	-	IS1634BT transposase
39	 30.56	+1	49583..51529	-	648	42560599	ftsH	MSC_0039	-	ATP-dependent zinc metallopeptidase FtsH
40	 20.57	0	51761..52144	+	127	42560600	-	MSC_0040	-	hypothetical protein
41	 22.22	0	52237..52605	+	122	42560601	-	MSC_0041	-	hypothetical protein
42	 18.24	-1	52589..53794	-	401	42560602	-	MSC_0042	-	hypothetical protein
43	 25.24	0	53797..54624	-	275	42560603	-	MSC_0043	-	hypothetical protein
44	 21.44	0	54676..55398	-	240	42560604	-	MSC_0044	-	methyltransferase
45	 19.16	-1	55398..56138	-	246	42560605	holB	MSC_0045	-	DNA polymerase III delta subunit
46	 25.08	0	56116..56757	-	213	42560606	tmk	MSC_0046	-	thymidylate kinase
47	 20.05	-1	56990..57358	-	122	42560607	recR	MSC_0047	-	DNA repair protein RecR
48	 21.54	0	57351..59309	-	652	42560608	dnaX	MSC_0048	-	DNA polymerase III gamma-tau subunits
49	 20.51	0	59379..59846	-	155	42560609	codA	MSC_0049	-	cytosine deaminase
50	 27.93	+1	59963..60925	-	320	42560610	guaC	MSC_0050	-	guanosine 5'-monophosphate oxidoreductase
51	 19.31	-1	61276..61824	-	182	42560611	-	MSC_0051	-	hypothetical protein
52	 22.69	0	62352..64427	-	691	42560612	-	MSC_0052	-	hypothetical protein
53	 24.00	0	64605..65054	-	149	42560613	-	MSC_0053	-	AhpC/TSA family protein
54	 25.13	0	65125..66867	+	580	42560614	ptsG	MSC_0054	-	PTS system, glucose-specific IIABC component
55	 24.74	0	66921..67781	-	286	42560615	tnpB	MSC_0055	-	IS1296IE transposase protein B
56	 24.68	0	67790..68344	-	184	42560616	tnpA	MSC_0056	-	IS1296IE transposase protein A
57	 22.95	0	68400..68582	-	60	42560617	-	MSC_0057	-	hypothetical protein
58	 22.09	0	68766..69014	-	82	42560618	-	MSC_0058	-	hypothetical protein
59	 20.00	-1	68941..69090	-	49	42560619	-	MSC_0059	-	hypothetical protein
60	 26.16	0	69594..71267	+	557	42560620	tnp	MSC_0060	-	IS1634BK transposase
61	 22.07	0	71462..72136	-	224	42560621	lpp	MSC_0061	-	prolipoprotein
62	 22.00	0	72310..72609	+	99	42560622	-	MSC_0062	-	hypothetical protein
63	 21.65	0	72628..73209	+	193	42560623	-	MSC_0063	-	hypothetical protein
64	 29.09	+1	73306..74436	+	376	42560624	ald	MSC_0064	-	alanine dehydrogenase
65	 24.97	0	74837..75661	+	274	42560625	-	MSC_0065	-	hypothetical protein
66	 25.61	0	75743..77011	+	422	42560626	serS	MSC_0066	-	seryl-tRNA synthetase
67	 26.03	0	77113..77427	+	104	42560627	-	MSC_0067	-	hypothetical protein
68	 28.51	+1	77429..78403	+	324	42560628	-	MSC_0068	-	NifR transcriptional regulator
69	 27.35	0	78406..79908	+	500	42560629	lysS	MSC_0069	-	lysine-tRNA ligase
70	 26.51	0	80179..81702	-	507	42560630	tnp	MSC_0070	-	IS1634BA transposase
71	 28.80	+1	82309..82617	-	102	42560631	trxA	MSC_0072	-	thioredoxin
72	 25.39	0	82628..83470	-	280	42560632	-	MSC_0073	-	HAD family hydrolase
73	 26.11	0	88758..90431	+	557	42560633	tnp	MSC_0074	-	IS1634BV transposase
74	 15.01	-2	91074..92372	+	432	42560634	-	MSC_0075	-	hypothetical protein
75	 20.44	0	92413..93141	+	242	42560635	comEC	MSC_0076	-	competence protein ComEC
76	 22.66	0	93174..95909	-	911	42560636	phnE	MSC_0077	-	phosphonate ABC transporter, permease component
77	 26.96	0	95913..96665	-	250	42560637	phnC	MSC_0078	-	phosphonate ABC transporter, ATP-binding component
78	 27.46	0	96679..98022	-	447	42560638	phnD?	MSC_0079	-	prolipoprotein, putative phosphonate ABC transport
79	 28.18	+1	98313..99671	-	452	42560639	asnC	MSC_0080	-	asparaginyl-tRNA synthetase
80	 24.88	0	99680..100519	-	279	42560640	-	MSC_0081	-	HAD family hydrolase
81	 20.16	0	100530..101660	-	376	42560641	-	MSC_0082	-	alpha/beta family hydrolase
82	 26.25	0	101683..102642	-	319	42560642	gcp	MSC_0083	-	O-sialoglycoprotein endopeptidase
83	 32.44	+2	102736..102960	-	74	42560643	-	MSC_0084	-	hypothetical protein
84	 23.62	0	103160..104518	+	452	42560644	trmE	MSC_0085	-	tRNA modification GTPase TrmE
85	 26.42	0	104566..104811	-	81	161723280	rpsT	MSC_0086	-	30S ribosomal protein S20
86	 20.32	0	105138..105890	-	250	42560646	-	MSC_0087	-	hypothetical protein
87	 22.82	0	105976..106593	-	205	42560647	-	MSC_0088	-	hypothetical protein
88	 27.02	0	106684..109518	-	944	42560648	secA	MSC_0089	-	preprotein translocase subunit SecA
89	 17.71	-1	109609..110184	+	191	42560649	pepQ	MSC_0090	-	proline dipeptidase
90	 21.75	0	110260..111174	+	304	42560650	polA	MSC_0091	-	DNA polymerase I, 5'-3' exonuclease
91	 21.44	0	111334..111888	+	184	42560651	-	MSC_0092	-	hypothetical protein
92	 22.71	0	112407..113027	+	206	42560652	-	MSC_0093	-	hypothetical protein
93	 21.86	0	113162..113719	+	185	42560653	-	MSC_0094	-	hypothetical protein
94	 23.91	0	114283..114558	+	91	42560654	-	MSC_0095	-	hypothetical protein
95	 18.95	-1	114548..115117	+	189	42560655	coaE	MSC_0096	-	dephospho-COA kinase
96	 25.99	0	115276..116949	+	557	42560656	tnp	MSC_0097	-	IS1634BO transposase
97	 25.99	0	117662..119335	-	557	42560657	tnp	MSC_0098	-	IS1634AP transposase
98	 23.56	0	119428..119877	-	149	42560658	hlyA	MSC_0099	-	hemolysin A
99	 24.07	0	119877..120092	-	71	42560659	xseB	MSC_0100	-	exodeoxyribonuclease VII small subunit
100	 23.90	0	120082..121491	-	469	42560660	xseA	MSC_0101	-	exodeoxyribonuclease VII large subunit
23.80	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.