IslandPath Analysis: Psychrobacter cryohalolentis K5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.76   STD DEV: 3.25
Psychrobacter cryohalolentis K5, complete genome - 1..3059876
2467 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.17	-1	2..373	-	123	93004832	-	Pcryo_0001	-	ribonuclease P protein component
2	 48.89	+1	574..708	-	44	93004833	rpmH	Pcryo_0002	-	50S ribosomal protein L34
3	 38.04	-1	1365..2810	+	481	93004834	-	Pcryo_0003	-	chromosomal replication initiator protein DnaA
4	 42.43	0	2971..4146	+	391	93004835	-	Pcryo_0004	-	DNA polymerase III, beta subunit
5	 40.86	0	4313..5521	+	402	93004836	-	Pcryo_0005	-	DNA replication and repair protein RecF
6	 43.62	0	6021..8636	+	871	93004837	-	Pcryo_0006	-	DNA gyrase, B subunit
7	 40.74	0	8749..9342	+	197	93004838	-	Pcryo_0007	-	hypothetical protein
8	 44.90	0	9456..10544	-	362	93004839	-	Pcryo_0008	-	putative SAM-dependent methyltransferase
9	 44.99	0	10559..11296	-	245	93004840	-	Pcryo_0009	-	lysine exporter protein LysE/YggA
10	 51.12	+2	11501..12304	+	267	93004841	-	Pcryo_0010	-	enoyl-CoA hydratase
11	 52.02	+2	12461..13300	-	279	93004842	-	Pcryo_0011	-	putative outer membrane protein
12	 43.54	0	13540..14724	+	394	93004843	-	Pcryo_0012	-	aminotransferase, class I and II
13	 48.82	+1	14853..16421	-	522	93004844	-	Pcryo_0013	-	carbohydrate kinase, FGGY
14	 47.16	+1	16601..18256	-	551	93004845	-	Pcryo_0014	-	FAD dependent oxidoreductase
15	 47.55	+1	18487..20238	-	583	93004846	-	Pcryo_0015	-	FAD linked oxidase-like
16	 47.37	+1	20495..22090	+	531	93004847	guaA	Pcryo_0016	-	bifunctional GMP synthase/glutamine amidotransferase protein
17	 37.10	-2	22169..23017	-	282	93004848	-	Pcryo_0017	-	HNH endonuclease
18	 46.07	0	23219..24223	-	334	93004849	-	Pcryo_0018	-	zinc-binding alcohol dehydrogenase
19	 46.32	0	24310..25287	-	325	93004850	-	Pcryo_0019	-	zinc-binding alcohol dehydrogenase
20	 46.27	0	25427..25681	-	84	93004851	-	Pcryo_0020	-	hypothetical protein
21	 45.83	0	25934..26653	+	239	93004852	-	Pcryo_0021	-	aspartate racemase
22	 49.59	+1	26771..28345	-	524	93004853	-	Pcryo_0022	-	MATE efflux family protein
23	 43.99	0	28605..29552	+	315	93004854	-	Pcryo_0023	-	alpha/beta hydrolase fold
24	 48.11	+1	29793..30848	-	351	93004855	-	Pcryo_0024	-	2-nitropropane dioxygenase, NPD
25	 36.27	-2	31051..32241	+	396	93004856	-	Pcryo_0025	-	hypothetical protein
26	 34.97	-2	32231..34309	+	692	93004857	-	Pcryo_0026	-	hypothetical protein
27	 44.71	0	34386..34763	-	125	93004858	-	Pcryo_0027	-	DsrE-like protein
28	 50.28	+2	35009..35551	-	180	93004859	-	Pcryo_0028	-	hypothetical protein
29	 44.25	0	35604..36656	-	350	93004860	-	Pcryo_0029	-	hypothetical protein
30	 47.40	+1	36776..37372	-	198	93004861	-	Pcryo_0030	-	hypothetical protein
31	 45.25	0	37571..38275	+	234	93004862	-	Pcryo_0031	-	pseudouridine synthase, Rsu
32	 44.92	0	38643..39686	+	347	93004863	-	Pcryo_0032	-	hypothetical protein
33	 42.53	0	39808..40557	-	249	93004864	-	Pcryo_0033	-	hypothetical protein
34	 46.53	0	40946..42082	+	378	93004865	-	Pcryo_0034	-	chaperone DnaJ
35	 45.61	0	42253..43083	+	276	93004866	-	Pcryo_0035	-	dihydrodipicolinate reductase
36	 43.76	0	43185..44105	+	306	93004867	-	Pcryo_0036	-	hypothetical protein
37	 42.01	0	44201..45376	-	391	93004868	-	Pcryo_0037	-	ornithine decarboxylase
38	 45.41	0	45620..46174	-	184	93004869	-	Pcryo_0038	-	peptide deformylase
39	 41.57	0	46410..46664	-	84	93004870	-	Pcryo_0039	-	transglycosylase-associated protein
40	 45.32	0	46979..48496	-	505	93004871	-	Pcryo_0040	-	UDP-N-acetylmuramate
41	 41.35	0	48786..49409	-	207	93004872	-	Pcryo_0041	-	hypothetical protein
42	 45.20	0	49603..50133	-	176	93004873	-	Pcryo_0042	-	disulphide bond formation protein DsbB
43	 44.32	0	50189..51772	-	527	93004874	-	Pcryo_0043	-	glutamate--cysteine ligase, monofunctional
44	 49.08	+1	52168..52548	-	126	93004875	-	Pcryo_0044	-	iron-sulfur cluster insertion protein ErpA
45	 45.88	0	53052..55043	+	663	93004876	-	Pcryo_0045	-	ABC transporter related
46	 42.15	0	55148..55510	-	120	93004877	-	Pcryo_0046	-	rare lipoprotein A
47	 43.81	0	56054..57046	+	330	93004878	-	Pcryo_0047	-	heat shock protein DnaJ-like
48	 47.22	+1	57132..57455	+	107	93004879	-	Pcryo_0048	-	hypothetical protein
49	 45.64	0	57543..58745	-	400	93004880	-	Pcryo_0049	-	serine/threonine transporter SstT
50	 39.47	-1	58940..59395	-	151	93004881	-	Pcryo_0050	-	putative DNA polymerase III, chi subunit
51	 43.75	0	59445..61124	-	559	93004882	-	Pcryo_0051	-	leucyl aminopeptidase
52	 41.58	0	61376..61981	-	201	93004883	-	Pcryo_0052	-	isochorismatase hydrolase
53	 46.39	0	62445..63731	+	428	93004884	-	Pcryo_0053	-	permease YjgP/YjgQ
54	 44.58	0	63731..64957	+	408	93004885	-	Pcryo_0054	-	permease YjgP/YjgQ
55	 42.20	0	65050..65658	-	202	93004886	-	Pcryo_0055	-	methyltransferase small
56	 39.41	-1	66040..66483	+	147	93004887	-	Pcryo_0056	-	hypothetical protein
57	 48.46	+1	66607..67545	-	312	93004888	-	Pcryo_0057	-	tyrosine recombinase XerD
58	 47.49	+1	67654..68868	-	404	93004889	-	Pcryo_0058	-	methyltransferase small
59	 44.83	0	68939..69199	-	86	93004890	-	Pcryo_0059	-	SirA-like
60	 41.29	0	69258..69785	-	175	93004891	-	Pcryo_0060	-	hypothetical protein
61	 45.40	0	70007..70528	-	173	93004892	-	Pcryo_0061	-	Holliday junction resolvase YqgF
62	 47.70	+1	70579..71142	-	187	93004893	-	Pcryo_0062	-	hypothetical protein
63	 46.61	0	71273..72952	-	559	93004894	-	Pcryo_0063	-	DNA repair protein RecN
64	 41.96	0	73502..73837	+	111	93004895	-	Pcryo_0064	-	hypothetical protein
65	 47.47	+1	74042..74812	+	256	93004896	-	Pcryo_0065	-	RNA methyltransferase TrmH, group 3
66	 47.33	+1	74775..75467	-	230	93004897	-	Pcryo_0066	-	dephospho-CoA kinase
67	 42.44	0	75551..76450	-	299	93004898	-	Pcryo_0067	-	prepilin peptidase
68	 42.40	0	76476..77699	-	407	93004899	-	Pcryo_0068	-	type II secretion system protein
69	 44.13	0	77937..79649	-	570	93004900	-	Pcryo_0069	-	type II secretion system protein E
70	 44.32	0	80047..80856	+	269	93004901	-	Pcryo_0070	-	triosephosphate isomerase
71	 49.51	+1	81085..81393	+	102	93004902	secG	Pcryo_0071	-	preprotein translocase subunit SecG
72	 42.32	0	82297..82797	+	166	93004903	-	Pcryo_0072	-	hypothetical protein
73	 43.23	0	82931..84415	+	494	93004904	nusA	Pcryo_0073	-	transcription elongation factor NusA
74	 45.73	0	84565..87291	+	908	93004905	infB	Pcryo_0074	-	translation initiation factor IF-2
75	 43.70	0	87490..87894	+	134	93004906	-	Pcryo_0075	-	ribosome-binding factor A
76	 41.85	0	87911..88990	+	359	93004907	-	Pcryo_0076	-	tRNA pseudouridine synthase B
77	 39.05	-1	89380..89904	+	174	93004908	-	Pcryo_0077	-	peptidase C56, PfpI
78	 38.33	-1	90167..90346	+	59	93004909	-	Pcryo_0078	-	hypothetical protein
79	 42.70	0	90699..90965	+	88	93004910	rpsO	Pcryo_0079	-	30S ribosomal protein S15
80	 44.56	0	91568..93670	+	700	93004911	-	Pcryo_0080	-	polynucleotide phosphorylase/polyadenylase
81	 41.36	0	93783..94355	-	190	93004912	-	Pcryo_0081	-	hypothetical protein
82	 38.98	-1	94399..94929	-	176	93004913	-	Pcryo_0082	-	hypothetical protein
83	 48.06	+1	95077..95334	-	85	93004914	-	Pcryo_0083	-	hypothetical protein
84	 44.31	0	95335..97530	-	731	93004915	-	Pcryo_0084	-	oligopeptidase A
85	 43.04	0	98092..99204	+	370	93004916	-	Pcryo_0085	-	hypothetical protein
86	 44.32	0	99407..100180	+	257	93004917	-	Pcryo_0086	-	endonuclease/exonuclease/phosphatase
87	 42.77	0	100240..101235	+	331	93004918	-	Pcryo_0087	-	alcohol dehydrogenase GroES-like protein
88	 38.92	-1	101271..101897	-	208	93004919	-	Pcryo_0088	-	2OG-Fe(II) oxygenase
89	 42.45	0	101906..102793	-	295	93004920	-	Pcryo_0089	-	alpha/beta hydrolase fold
90	 45.26	0	102843..104753	-	636	93004921	-	Pcryo_0090	-	ABC transporter related
91	 44.64	0	105030..105878	+	282	93004922	-	Pcryo_0091	-	hypothetical protein
92	 42.42	0	106052..106942	+	296	93004923	-	Pcryo_0092	-	fructose-1,6-bisphosphate aldolase
93	 48.44	+1	107114..109000	-	628	93004924	-	Pcryo_0093	-	thiamine biosynthesis protein ThiC
94	 41.58	0	109445..109735	-	96	93004925	-	Pcryo_0094	-	hypothetical protein
95	 48.62	+1	109881..111254	-	457	93004926	-	Pcryo_0095	-	argininosuccinate lyase
96	 40.02	-1	111371..112522	+	383	93004927	-	Pcryo_0096	-	histidine kinase internal region
97	 44.85	0	112718..113455	+	245	93004928	-	Pcryo_0097	-	LytR/AlgR family transcriptional regulator
98	 46.24	0	113639..114676	+	345	93004929	-	Pcryo_0098	-	porphobilinogen deaminase
99	 47.14	+1	114789..115766	+	325	93004930	-	Pcryo_0099	-	putative uroporphyrinogen-III synthase
100	 43.32	0	115896..116846	+	316	93004931	-	Pcryo_0100	-	hypothetical protein
43.76	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.