IslandPath Analysis: Mycoplasma agalactiae PG2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.04   STD DEV: 2.93
Mycoplasma agalactiae PG2, complete genome - 1..877438
742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.76	0	1..1401	+	466	148377269	dnaA	MAG0010	-	chromosomal replication initiation protein
2	 24.86	-1	1535..2644	+	369	148377270	dnaN	MAG0020	-	DNA polymerase III, beta chain
3	 28.37	0	3180..3965	+	261	148377271	lip	MAG0030	-	esterase/lipase
4	 27.59	0	3967..4785	+	272	148377272	lip	MAG0040	-	esterase/lipase
5	 31.73	0	4805..5992	-	395	148377273	-	MAG0050	-	NADH dependent flavin oxidoreductase
6	 29.93	0	6327..7031	-	234	148377274	-	MAG0060	-	lipoate-protein ligase A, truncated product
7	 31.98	0	7101..8138	-	345	148377275	lplA	MAG0070	-	lipoate-protein ligase A
8	 30.34	0	8116..8985	-	289	148377276	-	MAG0080	-	hypothetical protein
9	 28.99	0	8987..9331	-	114	148377277	gcdH	MAG0090	-	glycine cleavage system H protein
10	 29.74	0	9315..10316	-	333	148377278	-	MAG0100	-	hypothetical protein
11	 30.90	0	10437..11258	+	273	148377279	-	MAG0110	-	hypothetical protein
12	 34.05	+1	11306..12703	-	465	148377280	-	MAG0120	-	P48, lipoprotein
13	 25.56	-1	12825..13274	-	149	148377281	-	MAG0130	-	hypothetical protein
14	 33.64	+1	13399..15003	+	534	148377282	-	MAG0140	-	ABC transporter, ATP-binding protein, P59
15	 30.52	0	14996..16984	+	662	148377283	-	MAG0150	-	sugar ABC transporter permease
16	 35.58	+1	16984..17961	+	325	148377284	-	MAG0160	-	sugar ABC transporter permease protein
17	 30.02	0	18258..18920	+	220	148377285	dgk	MAG0170	-	deoxyguanosine kinase
18	 27.98	0	18922..19575	+	217	148377286	dgk	MAG0180	-	deoxyguanosine kinase
19	 29.66	0	19629..20363	-	244	148377287	-	MAG0190	-	hypothetical protein
20	 25.36	-1	20644..21546	-	300	148377288	-	MAG0200	-	hypothetical protein
21	 30.07	0	21636..21941	-	101	148377289	-	MAG0210	-	hypothetical protein
22	 27.96	0	22169..22615	-	148	148377290	-	MAG0220	-	hypothetical protein
23	 30.93	0	23296..23835	-	179	148377291	-	MAG0230	-	hypothetical protein
24	 30.80	0	23879..24628	-	249	148377292	-	MAG0240	-	lipoprotein
25	 32.78	0	24789..25694	-	301	148377293	-	MAG0250	-	hypothetical protein
26	 30.11	0	25696..26595	-	299	148377294	-	MAG0260	-	hypothetical protein
27	 34.06	+1	26757..27581	+	274	148377295	-	MAG0270	-	HAD superfamily hydrolase
28	 28.76	0	27621..29588	+	655	148377296	-	MAG0280	-	hypothetical protein
29	 28.71	0	29770..30612	+	280	148377297	-	MAG0290	-	ABC transporter ATP-binding protein
30	 24.71	-1	30720..31067	+	115	148377298	-	MAG0300	-	hypothetical protein
31	 29.34	0	31027..31878	+	283	148377299	-	MAG0310	-	hypothetical protein
32	 27.19	0	31945..32481	+	178	148377300	-	MAG0320	-	hypothetical protein
33	 26.50	-1	32520..32885	+	121	148377301	-	MAG0330	-	hypothetical protein
34	 31.61	0	32960..34294	-	444	148377302	oppF	MAG0340	-	oligopeptide ABC transporter, ATP-bindingprotein (OppF)
35	 33.02	+1	34287..35876	-	529	148377303	oppD	MAG0350	-	oligopeptide ABC transporter, ATP-bindingprotein (OppD)
36	 31.16	0	35884..36897	-	337	148377304	oppC	MAG0360	-	oligopeptide ABC transporter, permease protein(OppC)
37	 31.12	0	36899..37984	-	361	148377305	oppB	MAG0370	-	oligopeptide ABC transporter, permeaseprotein(OppB)
38	 32.18	0	37993..40944	-	983	148377306	oppA	MAG0380	-	oligopeptide ABC transporter, substrate-bindingprotein (OppA), lipoprotein
39	 30.92	0	40959..50948	-	3329	148377307	-	MAG0390	-	hypothetical protein
40	 28.82	0	51409..52650	+	413	148377308	cysS	MAG0400	-	cysteinyl-tRNA synthetase (cysteine-trnaligase)
41	 30.48	0	52697..53398	+	233	148377309	-	MAG0410	-	tRNA/rRNA methyltransferase
42	 26.77	-1	53409..53972	+	187	148377310	-	MAG0420	-	hypothetical protein
43	 31.33	0	54027..54176	+	49	148377311	rpmG	MAG0430	-	50S ribosomal protein L33
44	 34.67	+1	54418..55017	+	199	148377312	nusG	MAG0440	-	transcription antitermination protein NusG
45	 26.18	-1	55149..56183	+	344	148377313	-	MAG0450	-	hypothetical protein
46	 32.78	0	56373..57095	+	240	148377314	pyrH	MAG0460	-	uridylate kinase
47	 30.42	0	57095..57643	+	182	148377315	rrf	MAG0470	-	ribosome recycling factor (ribosome releasingfactor)
48	 28.15	0	57910..59298	-	462	148377316	-	MAG0480	-	hypothetical protein
49	 28.27	0	59223..59735	-	170	148377317	-	MAG0490	-	hypothetical protein
50	 31.33	0	59825..60823	-	332	148377318	gpsA	MAG0500	-	glycerol-3-phosphate dehydrogenase [NAD(P)+]
51	 30.50	0	60839..61651	-	270	148377319	ksgA	MAG0510	-	dimethyladenosine transferase(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)dimethyltransferase) (16S rRNA dimethylase) (high levelkasugamycin resistance protein ksgA) (kasugamycindimethyltransferase)
52	 31.23	0	61620..62381	-	253	148377320	-	MAG0520	-	putative deoxyribonuclease (YabD) deoxyribonuclease (TatD)
53	 31.69	0	62390..63727	-	445	148377321	trme	MAG0530	-	tRNA modification GTPase TrmE
54	 24.96	-1	63856..64524	+	222	148377322	-	MAG0540	-	hypothetical protein
55	 35.41	+1	64556..65566	-	336	148377323	gap	MAG0550	-	glyceraldehyde 3-phosphate dehydrogenase(GAPDH)
56	 31.68	0	65725..66993	-	422	148377324	serS	MAG0560	-	seryl-tRNA synthetase
57	 28.59	0	67021..68052	-	343	148377325	epsG	MAG0570	-	EpsG
58	 35.33	+1	68385..68534	+	49	148377326	rpmH	MAG7500	-	50S ribosomal protein L34
59	 24.07	-2	68548..68871	+	107	148377327	rnpA	MAG0580	-	ribonuclease P protein component
60	 30.87	0	68886..71033	+	715	148377328	-	MAG0590	-	putative inner membrane protein translocase component YidC
61	 30.28	0	71189..72169	+	326	148377329	lplA	MAG0600	-	lipoate-protein ligase A
62	 31.39	0	72172..72993	+	273	148377330	lip	MAG0610	-	esterase/lipase
63	 27.61	0	73226..73819	+	197	148377331	-	MAG0630	-	hypothetical protein
64	 31.91	0	73812..74792	+	326	148377332	asnA	MAG0640	-	asparagine synthetase AsnA
65	 31.16	0	74919..79298	+	1459	148377333	polC	MAG0650	-	DNA polymerase III PolC
66	 30.62	0	79708..80922	+	404	148377334	-	MAG0660	-	recombination factor protein RarA
67	 31.47	0	80922..81887	+	321	148377335	pheS	MAG0670	-	phenylalanyl-tRNA synthetase subunit alpha
68	 30.00	0	81877..82536	+	219	148377336	ung	MAG0680	-	Uracil-DNA glycosylase (Ung)
69	 29.02	0	82538..84718	+	726	148377337	pheT	MAG0690	-	phenylalanyl-tRNA synthetase beta chain (PheT)
70	 34.91	+1	84727..85992	+	421	148377338	glyA	MAG0700	-	serine hydroxymethyltransferase
71	 32.08	0	86002..86961	+	319	148377339	pip	MAG0710	-	proline iminopeptidase (Pip)
72	 30.15	0	86965..88125	+	386	148377340	nifS	MAG0720	-	nitrogen fixation protein NifS
73	 26.72	-1	88151..88543	+	130	148377341	nifU	MAG0730	-	nitrogen fixation protein NifU
74	 30.85	0	88533..89780	+	415	148377342	mucB	MAG0740	-	DNA-damage repair protein MucB
75	 30.41	0	89787..90881	+	364	148377343	nadD	MAG0750	-	putative nicotinate-nucleotide adenylyltransferase
76	 30.77	0	90896..91636	+	246	148377344	rluB	MAG0760	-	ribosomal large subunit pseudouridine synthaseB
77	 26.47	-1	91618..92811	+	397	148377345	-	MAG0770	-	lipoprotein
78	 34.59	+1	93113..93988	+	291	148377346	fba	MAG0780	-	fructose-bisphosphate aldolase (Fba)
79	 27.68	0	94073..94567	+	164	148377347	-	MAG0790	-	nuclease
80	 34.82	+1	94764..95234	+	156	148377348	rplK	MAG0800	-	50S ribosomal protein L11
81	 33.62	+1	95234..95929	+	231	148377349	rplA	MAG0810	-	50S ribosomal protein L1
82	 29.85	0	95975..96433	-	152	148377350	-	MAG0820	-	hypothetical protein
83	 25.32	-1	96420..96893	-	157	148377351	-	MAG0830	-	hypothetical protein
84	 26.21	-1	96912..97796	-	294	148377352	-	MAG0840	-	hypothetical protein
85	 28.65	0	98209..98742	+	177	148377353	cspR	MAG0850	-	tRNA/rRNA methyltransferase
86	 29.78	0	98727..99458	+	243	148377354	-	MAG0860	-	rRNA methylase
87	 27.41	0	99698..100558	+	286	148377355	-	MAG0870	-	ribosomal biogenesis GTPase
88	 26.41	-1	100588..100977	+	129	148377356	-	MAG0880	-	hypothetical protein
89	 31.57	0	101112..102074	+	320	148377357	hprK	MAG0890	-	HPr kinase/phosphorylase
90	 33.43	+1	102067..103050	+	327	148377358	lgt	MAG0900	-	prolipoprotein diacylglyceryl transferase
91	 32.68	0	103052..103975	+	307	148377359	trxB	MAG0910	-	thioredoxin reductase
92	 24.93	-1	104082..104771	-	229	148377360	-	MAG0920	-	hypothetical protein
93	 35.90	+1	104982..106073	+	363	148377361	pdhA	MAG0930	-	pyruvate dehydrogenase E1 component, alphasubunit
94	 36.58	+2	106109..107095	+	328	148377362	pdhB	MAG0940	-	pyruvate dehydrogenase E1 component, betasubunit
95	 34.56	+1	107459..108193	+	244	148377363	pdhC	MAG0950	-	dihydrolipoamide acetyltransferase component ofpyruvate deshydrogenase complex
96	 35.92	+2	108195..109820	+	541	148377364	pdhD	MAG0960	-	dihydrolipoamide dehydrogenase (E3 component ofpyruvate complex)
97	 36.71	+2	110014..110220	+	68	148377365	rpmB	MAG0970	-	50S ribosomal protein L28
98	 32.27	0	110354..110824	-	156	148377366	-	MAG0980	-	hypothetical protein
99	 29.44	0	110839..111738	-	299	148377367	-	MAG0990	-	hypothetical protein
100	 32.36	0	112247..115126	+	959	148377368	-	MAG1000	-	hypothetical protein
30.04	MEAN

2.93	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.