IslandPath Analysis: Pseudoalteromonas atlantica T6c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.02   STD DEV: 2.89
Pseudoalteromonas atlantica T6c, complete genome - 1..5187005
4281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.77	-1	96..1520	+	474	109896333	-	Patl_0001	-	chromosomal replication initiator protein DnaA
2	 39.67	-1	1541..2644	+	367	109896334	-	Patl_0002	-	DNA polymerase III, beta subunit
3	 40.93	-1	2667..3758	+	363	109896335	-	Patl_0003	-	DNA replication and repair protein RecF
4	 41.97	-1	3763..6183	+	806	109896336	-	Patl_0004	-	DNA gyrase, B subunit
5	 40.92	-1	6298..6996	+	232	109896337	-	Patl_0005	-	aspartate racemase
6	 39.37	-1	7111..8718	-	535	109896338	-	Patl_0006	-	diguanylate cyclase
7	 40.82	-1	8792..9232	-	146	109896339	-	Patl_0007	-	hypothetical protein
8	 45.07	0	9269..11347	-	692	109896340	-	Patl_0008	-	glycine--tRNA ligase
9	 43.93	0	11351..12256	-	301	109896341	glyQ	Patl_0009	-	glycyl-tRNA synthetase subunit alpha
10	 40.49	-1	12372..12944	+	190	109896342	-	Patl_0010	-	DNA-3-methyladenine glycosylase I
11	 41.33	-1	12966..13415	-	149	109896343	-	Patl_0011	-	hypothetical protein
12	 42.61	0	13424..13951	-	175	109896344	-	Patl_0012	-	hypothetical protein
13	 42.32	0	14429..15118	-	229	109896345	-	Patl_0013	-	cytochrome c, class I
14	 43.32	0	15261..15881	+	206	109896346	-	Patl_0014	-	GTP-binding protein, HSR1-related
15	 43.52	0	16229..19015	-	928	109896347	-	Patl_0015	-	DNA polymerase I
16	 44.63	0	19825..21276	+	483	109896348	-	Patl_0016	-	TrkH family potassium uptake protein
17	 44.58	0	21516..22262	-	248	109896349	-	Patl_0017	-	TraT complement resistance
18	 42.22	0	22303..22662	-	119	109896350	-	Patl_0018	-	hypothetical protein
19	 42.09	-1	22918..23454	-	178	109896351	-	Patl_0019	-	hypothetical protein
20	 45.36	0	23559..24938	-	459	109896352	trkA	Patl_0020	-	potassium transporter peripheral membrane component
21	 45.21	0	24986..26299	-	437	109896353	-	Patl_0021	-	sun protein
22	 46.41	0	26296..27243	-	315	109896354	-	Patl_0022	-	methionyl-tRNA formyltransferase
23	 42.55	0	27253..27762	-	169	109896355	-	Patl_0023	-	peptide deformylase
24	 43.61	0	28001..29080	+	359	109896356	-	Patl_0024	-	peptidoglycan-binding LysM
25	 43.42	0	29105..30244	+	379	109896357	-	Patl_0025	-	DNA protecting protein DprA
26	 40.25	-1	30246..30722	+	158	109896358	-	Patl_0026	-	hypothetical protein
27	 46.17	0	30779..31339	+	186	109896359	-	Patl_0027	-	DNA topoisomerase, type IA, Zn finger
28	 47.34	0	31408..31971	+	187	109896360	-	Patl_0028	-	SUA5/yciO/yrdC-like
29	 46.32	0	31975..32898	+	307	109896361	-	Patl_0029	-	coproporphyrinogen III oxidase
30	 41.52	-1	33101..33784	+	227	109896362	-	Patl_0030	-	OmpW
31	 45.54	0	33931..34749	+	272	109896363	-	Patl_0031	-	shikimate 5-dehydrogenase
32	 39.92	-1	34746..34988	+	80	109896364	-	Patl_0032	-	hypothetical protein
33	 42.70	0	35035..35568	-	177	109896365	-	Patl_0033	-	carbonic anhydrase/acetyltransferase
34	 42.82	0	45151..46605	-	484	109896366	-	Patl_0035	-	hypothetical protein
35	 46.23	0	46615..47304	-	229	109896367	-	Patl_0036	-	hypothetical protein
36	 44.09	0	47478..47951	+	157	109896368	-	Patl_0037	-	hypothetical protein
37	 38.14	-2	47969..48841	-	290	109896369	-	Patl_0038	-	hypothetical protein
38	 38.46	-2	48863..49564	-	233	109896370	-	Patl_0039	-	hypothetical protein
39	 45.93	0	49808..51577	-	589	109896371	-	Patl_0040	-	hypothetical protein
40	 41.98	-1	51625..51948	-	107	109896372	-	Patl_0041	-	hypothetical protein
41	 45.39	0	52248..53906	+	552	109896373	-	Patl_0042	-	peptidase M28
42	 45.02	0	54077..55933	+	618	109896374	-	Patl_0043	-	hypothetical protein
43	 43.60	0	56015..56608	-	197	109896375	slmA	Patl_0044	-	nucleoid occlusion protein
44	 48.80	+1	56671..57924	-	417	109896376	-	Patl_0045	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
45	 49.63	+1	58059..58733	+	224	109896377	-	Patl_0046	-	DNA repair protein RadC
46	 44.28	0	58861..59673	+	270	109896378	-	Patl_0047	-	glycosyl transferase family protein
47	 39.66	-1	59813..60049	+	78	109896379	-	Patl_0048	-	ribosomal protein L28
48	 35.90	-2	60062..60217	+	51	109896380	-	Patl_0049	-	ribosomal protein L33
49	 45.76	0	60368..60898	+	176	109896381	-	Patl_0050	-	hypothetical protein
50	 45.63	0	60939..61751	+	270	109896382	-	Patl_0051	-	formamidopyrimidine-DNA glycosylase
51	 41.62	-1	61839..62912	-	357	109896383	-	Patl_0052	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
52	 46.17	0	63017..63499	-	160	109896384	coaD	Patl_0053	-	phosphopantetheine adenylyltransferase
53	 45.73	0	63548..64951	-	467	109896385	-	Patl_0054	-	hypothetical protein
54	 42.78	0	65078..65797	-	239	109896386	-	Patl_0055	-	3-deoxy-D-manno-octulosonic-acid kinase
55	 45.22	0	65951..67027	+	358	109896387	-	Patl_0056	-	glycosyl transferase, group 1
56	 45.86	0	67034..68350	-	438	109896388	-	Patl_0057	-	three-deoxy-D-manno-octulosonic-acid transferase-like
57	 44.29	0	68610..69029	+	139	109896389	-	Patl_0058	-	hypothetical protein
58	 44.67	0	69031..70212	+	393	109896390	-	Patl_0059	-	hypothetical protein
59	 43.22	0	70215..72662	+	815	109896391	-	Patl_0060	-	diguanylate cyclase/phosphodiesterase
60	 46.12	0	72809..74005	+	398	109896392	-	Patl_0061	-	2-amino-3-ketobutyrate coenzyme A ligase
61	 46.53	0	74002..75024	+	340	109896393	tdh	Patl_0062	-	L-threonine 3-dehydrogenase
62	 46.11	0	75040..75360	+	106	109896394	-	Patl_0063	-	thiosulfate sulfurtransferase
63	 45.73	0	75364..76242	+	292	109896395	-	Patl_0064	-	rhomboid-like protein
64	 44.44	0	76249..76662	-	137	109896396	-	Patl_0065	-	flagellar basal body-associated protein FliL-like protein
65	 44.56	0	76790..77368	+	192	109896397	-	Patl_0066	-	chorismate lyase
66	 47.57	0	77409..78230	+	273	109896398	-	Patl_0067	-	4-hydroxybenzoate polyprenyl transferase
67	 45.40	0	78268..80214	+	648	109896399	-	Patl_0068	-	methyl-accepting chemotaxis sensory transducer
68	 39.29	-1	80220..80471	-	83	109896400	-	Patl_0069	-	hypothetical protein
69	 46.78	0	80654..82669	+	671	109896401	-	Patl_0070	-	ATP-dependent DNA helicase Rep
70	 42.55	0	82673..85264	-	863	109896402	-	Patl_0071	-	diguanylate cyclase/phosphodiesterase with GAF sensor
71	 45.99	0	85401..85811	-	136	109896403	-	Patl_0072	-	cytochrome c, class I
72	 44.40	0	85909..86748	-	279	109896404	-	Patl_0073	-	DNA ligase
73	 46.38	0	87003..87830	-	275	109896405	-	Patl_0074	-	alpha/beta hydrolase fold
74	 38.46	-2	88840..89112	-	90	109896406	-	Patl_0075	-	hypothetical protein
75	 45.54	0	89226..90290	-	354	109896407	-	Patl_0076	-	A/G-specific adenine glycosylase
76	 46.99	0	90367..91098	+	243	109896408	-	Patl_0077	-	alpha/beta hydrolase fold
77	 46.53	0	91179..91898	+	239	109896409	-	Patl_0078	-	tRNA (guanine-N(7)-)-methyltransferase
78	 43.80	0	91898..92929	+	343	109896410	-	Patl_0079	-	rRNA (guanine-N(2)-)-methyltransferase
79	 45.21	0	93048..94478	+	476	109896411	glgA	Patl_0080	-	glycogen synthase
80	 44.40	0	94987..96576	+	529	109896412	-	Patl_0081	-	histidine kinase
81	 42.09	-1	96793..97500	+	235	109896413	-	Patl_0082	-	two-component response regulator
82	 47.74	0	97568..98053	-	161	109896414	-	Patl_0083	-	FxsA cytoplasmic membrane protein
83	 44.52	0	98333..100111	+	592	109896415	dipZ	Patl_0084	-	thiol:disulfide interchange protein precursor
84	 48.65	+1	100158..101012	+	284	109896416	-	Patl_0085	-	hypothetical protein
85	 46.83	0	101096..101725	-	209	109896417	-	Patl_0086	-	uracil phosphoribosyltransferase
86	 42.50	0	101751..102350	-	199	109896418	-	Patl_0087	-	hypothetical protein
87	 41.15	-1	102565..103050	+	161	109896419	-	Patl_0088	-	3-dehydroquinate dehydratase
88	 45.41	0	103110..103556	+	148	109896420	-	Patl_0089	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
89	 46.89	0	103571..104920	+	449	109896421	-	Patl_0090	-	acetyl-CoA carboxylase, biotin carboxylase
90	 47.47	0	104987..106351	-	454	109896422	-	Patl_0091	-	MATE efflux family protein
91	 49.72	+1	106492..107370	+	292	109896423	prmA	Patl_0092	-	ribosomal protein L11 methyltransferase
92	 45.61	0	107394..107906	-	170	109896424	-	Patl_0093	-	HxlR family transcriptional regulator
93	 44.81	0	108325..108507	+	60	109896425	-	Patl_0094	-	hypothetical protein
94	 48.17	+1	108792..109910	+	372	109896426	-	Patl_0095	-	inosine/uridine-preferring nucleoside hydrolase
95	 46.41	0	110016..111032	-	338	109896427	-	Patl_0096	-	hypothetical protein
96	 41.18	-1	111033..111287	-	84	109896428	-	Patl_0097	-	hypothetical protein
97	 49.61	+1	111594..112109	-	171	109896429	-	Patl_0098	-	sodium/calcium exchanger membrane region
98	 43.33	0	112604..114013	+	469	109896430	-	Patl_0099	-	hypothetical protein
99	 44.84	0	114100..114525	-	141	109896431	-	Patl_0100	-	MarR family transcriptional regulator
100	 47.32	0	114655..115083	+	142	109896432	-	Patl_0101	-	OsmC-like protein
45.02	MEAN

2.89	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.