IslandPath Analysis: Serratia proteamaculans 568



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.62   STD DEV: 4.71
Serratia proteamaculans 568, complete genome - 1..5448853
4891 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.91	0	565..948	+	127	157368250	-	Spro_0001	-	F0F1 ATP synthase subunit I
2	 48.30	-1	969..1790	+	273	157368251	-	Spro_0002	-	F0F1 ATP synthase subunit A
3	 52.50	0	1840..2079	+	79	157368252	-	Spro_0003	-	F0F1 ATP synthase subunit C
4	 52.44	0	2137..2607	+	156	157368253	-	Spro_0004	-	F0F1 ATP synthase subunit B
5	 52.06	0	2622..3155	+	177	157368254	-	Spro_0005	-	F0F1 ATP synthase subunit delta
6	 54.60	0	3168..4709	+	513	157368255	-	Spro_0006	-	F0F1 ATP synthase subunit alpha
7	 52.89	0	4768..5631	+	287	157368256	-	Spro_0007	-	F0F1 ATP synthase subunit gamma
8	 53.72	0	5664..7046	+	460	157368257	-	Spro_0008	-	F0F1 ATP synthase subunit beta
9	 53.10	0	7067..7486	+	139	157368258	-	Spro_0009	-	F0F1 ATP synthase subunit epsilon
10	 57.40	0	7783..9153	+	456	157368259	-	Spro_0010	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
11	 57.60	0	9365..11194	+	609	157368260	-	Spro_0011	-	D-fructose-6-phosphate amidotransferase
12	 55.24	0	11524..12564	+	346	157368261	-	Spro_0012	-	phosphate transporter subunit
13	 56.74	0	12657..13613	+	318	157368262	-	Spro_0013	-	phosphate transporter permease subunit
14	 57.71	0	13624..14505	+	293	157368263	-	Spro_0014	-	phosphate transporter permease subunit
15	 54.05	0	14554..15330	+	258	157368264	-	Spro_0015	-	phosphate transporter subunit
16	 55.51	0	15342..16076	+	244	157368265	-	Spro_0016	-	transcriptional regulator PhoU
17	 56.67	0	16245..17084	+	279	157368266	-	Spro_0017	-	extracellular solute-binding protein
18	 59.94	0	17162..17875	+	237	157368267	-	Spro_0018	-	polar amino acid ABC transporter, inner membrane subunit
19	 60.46	+1	17877..18617	+	246	157368268	-	Spro_0019	-	polar amino acid ABC transporter, inner membrane subunit
20	 56.46	0	18610..19275	-	221	157368269	-	Spro_0020	-	6-phosphogluconate phosphatase
21	 56.65	0	19501..20838	+	445	157368270	-	Spro_0021	-	xanthine/uracil/vitamin C permease
22	 54.99	0	21100..22152	-	350	157368271	-	Spro_0022	-	hypothetical protein
23	 56.97	0	22248..22814	-	188	157368272	-	Spro_0023	-	NADPH-dependent FMN reductase
24	 57.85	0	22989..23714	-	241	157368273	-	Spro_0024	-	hypothetical protein
25	 54.11	0	23811..25124	-	437	157368274	-	Spro_0025	-	L-lysine 6-monooxygenase (NADPH)
26	 55.56	0	25247..26047	-	266	157368275	-	Spro_0026	-	beta-lactamase domain-containing protein
27	 61.03	+1	26077..27441	-	454	157368276	-	Spro_0027	-	tRNA modification GTPase TrmE
28	 55.13	0	27544..29181	-	545	157368277	-	Spro_0028	-	putative inner membrane protein translocase component YidC
29	 55.43	0	29184..29441	-	85	157368278	-	Spro_0029	-	hypothetical protein
30	 55.56	0	29405..29764	-	119	157368279	-	Spro_0030	-	ribonuclease P
31	 52.48	0	29783..29923	-	46	157368280	-	Spro_0031	-	50S ribosomal protein L34
32	 53.09	0	30606..31997	+	463	157368281	-	Spro_0032	-	chromosomal replication initiation protein
33	 57.49	0	32002..33102	+	366	157368282	-	Spro_0033	-	DNA polymerase III subunit beta
34	 58.10	0	33271..34356	+	361	157368283	-	Spro_0034	-	recombination protein F
35	 54.78	0	34375..36789	+	804	157368284	-	Spro_0035	-	DNA gyrase subunit B
36	 54.66	0	36913..37728	+	271	157368285	-	Spro_0036	-	sugar phosphatase
37	 56.45	0	37845..38813	-	322	157368286	-	Spro_0037	-	hypothetical protein
38	 55.61	0	38810..39415	-	201	157368287	-	Spro_0038	-	YheO domain-containing protein
39	 52.47	0	39690..41006	+	438	157368288	-	Spro_0039	-	major facilitator transporter
40	 59.92	0	40999..41946	+	315	157368289	-	Spro_0040	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
41	 55.34	0	42130..42888	+	252	157368290	-	Spro_0041	-	GntR domain-containing protein
42	 58.05	0	42885..43778	+	297	157368291	-	Spro_0042	-	2-dehydro-3-deoxygalactonokinase
43	 60.68	+1	43762..44379	+	205	157368292	-	Spro_0043	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
44	 57.35	0	44376..45524	+	382	157368293	-	Spro_0044	-	mandelate racemase/muconate lactonizing protein
45	 55.38	0	45743..47035	+	430	157368294	-	Spro_0045	-	d-galactonate transporter
46	 60.34	+1	47082..48362	+	426	157368295	-	Spro_0046	-	hypothetical protein
47	 58.84	0	48397..48741	-	114	157368296	-	Spro_0047	-	hypothetical protein
48	 47.10	-1	49046..49459	+	137	157368297	-	Spro_0048	-	heat shock protein IbpA
49	 55.24	0	49568..49996	+	142	157368298	-	Spro_0049	-	heat shock chaperone IbpB
50	 58.71	0	50164..51822	+	552	157368299	-	Spro_0050	-	hypothetical protein
51	 49.08	-1	51859..52239	-	126	157368300	-	Spro_0051	-	PilT domain-containing protein
52	 50.00	-1	52239..52448	-	69	157368301	-	Spro_0052	-	hypothetical protein
53	 56.08	0	52549..53871	-	440	157368302	-	Spro_0053	-	valine--pyruvate transaminase
54	 60.14	0	53931..55997	-	688	157368303	-	Spro_0054	-	periplasmic alpha-amylase precursor
55	 48.19	-1	56186..56434	+	82	157368304	-	Spro_0055	-	CopG family transcriptional regulator
56	 44.79	-2	56424..56711	+	95	157368305	-	Spro_0056	-	plasmid stabilization system protein
57	 57.87	0	56756..57733	-	325	157368306	-	Spro_0057	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
58	 57.21	0	57838..59106	-	422	157368307	-	Spro_0058	-	major facilitator transporter
59	 59.27	0	59204..60163	-	319	157368308	-	Spro_0059	-	ribokinase-like domain-containing protein
60	 58.17	0	60170..60922	-	250	157368309	-	Spro_0060	-	xylose isomerase domain-containing protein
61	 58.45	0	61106..62140	-	344	157368310	-	Spro_0061	-	LacI family transcription regulator
62	 61.09	+1	62260..62922	-	220	157368311	-	Spro_0062	-	putative outer membrane lipoprotein
63	 59.04	0	63191..63649	-	152	157368312	-	Spro_0063	-	hypothetical protein
64	 56.03	0	63625..64188	-	187	157368313	-	Spro_0064	-	DNA-3-methyladenine glycosylase I
65	 59.98	0	64387..66375	+	662	157368314	-	Spro_0065	-	outer membrane autotransporter
66	 36.68	-2	67169..67915	+	248	157368315	-	Spro_0066	-	LuxR family transcriptional regulator
67	 39.11	-2	67874..68548	-	224	157368316	-	Spro_0067	-	autoinducer synthesis protein
68	 59.30	0	68897..70240	-	447	157368317	-	Spro_0068	-	major facilitator transporter
69	 58.36	0	70502..71416	+	304	157368318	-	Spro_0069	-	glycyl-tRNA synthetase subunit alpha
70	 59.08	0	71426..73495	+	689	157368319	-	Spro_0070	-	glycyl-tRNA synthetase subunit beta
71	 54.44	0	73841..74560	+	239	157368320	-	Spro_0071	-	hypothetical protein
72	 57.76	0	75110..77029	+	639	157368321	-	Spro_0072	-	PTS system, mannitol-specific IIC subunit
73	 58.94	0	77088..78239	+	383	157368322	-	Spro_0073	-	mannitol-1-phosphate 5-dehydrogenase
74	 58.15	0	78334..78885	+	183	157368323	-	Spro_0074	-	mannitol repressor protein
75	 59.11	0	78882..79490	-	202	157368324	-	Spro_0075	-	lysine exporter protein LysE/YggA
76	 60.60	+1	79630..81096	+	488	157368325	-	Spro_0076	-	transcriptional regulator
77	 52.42	0	81118..81531	+	137	157368326	-	Spro_0077	-	hypothetical protein
78	 59.10	0	81566..82345	-	259	157368327	-	Spro_0078	-	methyltransferase type 11
79	 60.12	0	82460..83131	-	223	157368328	-	Spro_0079	-	hypothetical protein
80	 58.79	0	83225..85153	-	642	157368329	-	Spro_0080	-	methyl-accepting chemotaxis sensory transducer
81	 54.27	0	85281..85901	-	206	157368330	-	Spro_0081	-	superoxide dismutase
82	 56.75	0	86032..86868	-	278	157368331	-	Spro_0082	-	formate dehydrogenase accessory protein
83	 57.82	0	87013..87600	+	195	157368332	-	Spro_0083	-	molybdopterin oxidoreductase Fe4S4 region
84	 58.25	0	87649..90060	+	803	157368333	-	Spro_0084	-	formate dehydrogenase, alpha subunit
85	 61.11	+1	90073..90972	+	299	157368334	-	Spro_0085	-	formate dehydrogenase, beta subunit
86	 54.87	0	90969..91604	+	211	157368335	-	Spro_0086	-	formate dehydrogenase-O subunit gamma
87	 58.92	0	91604..92533	+	309	157368336	-	Spro_0087	-	formate dehydrogenase accessory protein FdhE
88	 55.71	0	92673..93320	+	215	157368337	-	Spro_0088	-	hypothetical protein
89	 60.40	+1	93355..93960	+	201	157368338	-	Spro_0089	-	predicted glutathione S-transferase
90	 62.50	+1	94027..95418	+	463	157368339	-	Spro_0090	-	selenocysteine synthase
91	 62.18	+1	95415..97262	+	615	157368340	-	Spro_0091	-	selenocysteinyl-tRNA-specific translation factor
92	 60.26	0	97654..98901	-	415	157368341	-	Spro_0092	-	major facilitator transporter
93	 54.28	0	99120..100112	+	330	157368342	-	Spro_0093	-	hypothetical protein
94	 63.64	+1	100107..101030	-	307	157368343	-	Spro_0094	-	AraC family transcriptional regulator
95	 57.07	0	101033..101584	-	183	157368344	-	Spro_0095	-	isochorismatase hydrolase
96	 60.07	0	101685..103079	-	464	157368345	-	Spro_0096	-	deaminase
97	 64.67	+1	103226..104677	-	483	157368346	-	Spro_0097	-	xylulokinase
98	 57.42	0	104720..106039	-	439	157368347	-	Spro_0098	-	xylose isomerase
99	 54.82	0	106406..107401	+	331	157368348	-	Spro_0099	-	D-xylose transporter subunit XylF
100	 56.10	0	107431..108972	+	513	157368349	-	Spro_0100	-	xylose transporter ATP-binding subunit
55.62	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.