IslandPath Analysis: Oligotropha carboxidovorans OM5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.38   STD DEV: 3.90
Oligotropha carboxidovorans OM5, complete genome - 1..3745629
3722 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.76	+1	206..2263	-	685	209883161	-	OCAR_4001	-	hypothetical protein
2	 68.51	+1	2577..3497	-	306	209883162	-	OCAR_4002	-	lytic transglycosylase, catalytic
3	 64.58	0	3502..3837	-	111	209883163	-	OCAR_4003	-	hypothetical protein
4	 68.59	+1	3904..4476	-	190	209883164	-	OCAR_4004	-	conjugal transfer protein
5	 66.67	+1	4446..4964	-	172	209883165	-	OCAR_4005	-	hypothetical protein
6	 69.05	+1	4961..5212	-	83	209883166	-	OCAR_4006	-	hypothetical protein
7	 71.87	+2	5209..5862	-	217	209883167	-	OCAR_4007	-	cobyrinic Acid a,c-diamide synthase
8	 63.12	0	5859..6929	-	356	209883168	-	OCAR_4008	-	replication protein A
9	 66.30	+1	6930..7199	-	89	209883169	-	OCAR_4009	-	phage transcriptional regulator, AlpA
10	 60.42	0	7656..7943	+	95	209883170	-	OCAR_4010	-	hypothetical protein
11	 60.58	0	7952..8740	-	262	209883171	-	OCAR_4011	-	hypothetical protein
12	 62.89	0	8851..9009	-	52	209883172	-	OCAR_4012	-	hypothetical protein
13	 62.06	0	9040..10233	-	397	209883173	-	OCAR_4013	-	hypothetical protein
14	 64.80	0	10644..10964	-	106	209883174	-	OCAR_4014	-	hypothetical protein
15	 62.82	0	11090..11245	+	51	209883175	-	OCAR_4015	-	hypothetical protein
16	 58.14	-1	11703..12617	-	304	209883176	-	OCAR_4016	-	peptidase S41
17	 64.08	0	12847..13272	-	141	209883177	-	OCAR_4017	-	hypothetical protein
18	 64.37	0	13487..15580	-	697	209883178	-	OCAR_4018	-	ParB domain protein nuclease
19	 63.77	0	16014..18152	-	712	209883179	cadA3	OCAR_4019	-	cadmium-translocating P-type ATPase
20	 62.62	0	18219..18638	+	139	209883180	-	OCAR_4020	-	CadR
21	 61.80	0	18893..19426	-	177	209883181	-	OCAR_4021	-	twin-arginine translocation pathway signal
22	 57.58	-1	19311..19442	+	43	209883182	-	OCAR_4022	-	hypothetical protein
23	 57.26	-1	19449..19565	-	38	209883183	-	OCAR_4023	-	hypothetical protein
24	 61.91	0	19578..22754	-	1058	209883184	-	OCAR_4024	-	cation efflux system protein CusA
25	 62.03	0	22751..24172	-	473	209883185	-	OCAR_4025	-	secretion protein HlyD
26	 61.58	0	24169..24561	-	130	209883186	-	OCAR_4026	-	hypothetical protein
27	 60.00	0	25194..25913	-	239	209883187	arsH	OCAR_4027	-	arsenical resistance protein ArsH
28	 62.59	0	25910..26965	-	351	209883188	arsB2	OCAR_4028	-	arsenical-resistance protein
29	 59.86	0	26974..27399	-	141	209883189	arsC2	OCAR_4029	-	arsenate reductase
30	 59.85	0	27409..27951	-	180	209883190	-	OCAR_4030	-	Low molecular weight phosphotyrosine protein phosphatase
31	 63.36	0	27944..28306	-	120	209883191	-	OCAR_4031	-	transcriptional regulatory protein of ArsR family
32	 55.42	-1	28475..30484	-	669	209883192	-	OCAR_4032	-	hypothetical protein
33	 55.53	-1	30486..31868	-	460	209883193	-	OCAR_4033	-	hypothetical protein
34	 57.27	-1	31947..32393	-	148	209883194	-	OCAR_4034	-	PilT protein domain protein
35	 64.71	0	32390..32644	-	84	209883195	-	OCAR_4035	-	hypothetical protein
36	 54.27	-2	33022..33255	+	77	209883196	-	OCAR_4036	-	hypothetical protein
37	 57.24	-1	33458..35197	-	579	209883197	-	OCAR_4037	-	hypothetical protein
38	 58.68	0	35194..38484	-	1096	209883198	-	OCAR_4038	-	hypothetical protein
39	 58.41	-1	38704..39624	-	306	209883199	-	OCAR_4039	-	hypothetical protein
40	 55.56	-1	39963..40160	+	65	209883200	-	OCAR_4040	-	hypothetical protein
41	 61.80	0	40303..41001	-	232	209883201	-	OCAR_4041	-	hypothetical protein
42	 62.49	0	40998..41978	-	326	209883202	-	OCAR_4042	-	glyoxylate reductase
43	 63.02	0	41984..42751	-	255	209883203	-	OCAR_4043	-	binding-protein-dependent transport systems inner membrane component
44	 64.86	0	42793..43566	-	257	209883204	-	OCAR_4044	-	aliphatic sulfonates import ATP-binding protein SsuB 1
45	 58.36	-1	43563..44573	-	336	209883205	-	OCAR_4045	-	perplasmic binding protein of ABC transporter
46	 62.94	0	44709..45512	+	267	209883206	-	OCAR_4046	-	creatininase
47	 62.84	0	45913..47847	+	644	209883207	-	OCAR_4047	-	carbohydrate-selective porin OprB
48	 63.77	0	47914..49533	-	539	209883208	-	OCAR_4048	-	glutamate synthase domain protein
49	 60.58	0	49896..50306	+	136	209883209	-	OCAR_4050	-	glyoxalase family protein
50	 64.10	0	50568..51074	+	168	209883210	-	OCAR_4051	-	hypothetical protein
51	 63.38	0	51154..53526	-	790	209883211	-	OCAR_4052	-	RND superfamily transporter
52	 59.66	0	53775..54131	+	118	209883212	-	OCAR_4053	-	hypothetical protein
53	 66.67	+1	54290..54886	+	198	209883213	-	OCAR_4054	-	hypothetical protein
54	 64.44	0	54922..55191	+	89	209883214	-	OCAR_4055	-	transglycosylase-associated protein
55	 61.54	0	55191..56009	+	272	209883215	-	OCAR_4056	-	nuclease
56	 63.31	0	56013..57500	+	495	209883216	-	OCAR_4057	-	peptidase M48, Ste24p
57	 63.68	0	57628..58599	-	323	209883217	-	OCAR_4058	-	transcriptional regulator of CarD family
58	 57.52	-1	58824..59162	-	112	209883218	-	OCAR_4059	-	ferredoxin-1
59	 67.41	+1	59255..59524	-	89	209883219	-	OCAR_4060	-	RNA-binding S4
60	 64.73	0	59528..62776	-	1082	209883220	-	OCAR_4061	-	helicase
61	 66.02	0	63093..64016	-	307	209883221	-	OCAR_4062	-	hypothetical protein
62	 60.88	0	64236..64529	+	97	209883222	-	OCAR_4063	-	50S ribosomal protein L28
63	 62.50	0	64755..66266	-	503	209883223	-	OCAR_4064	-	integral membrane protein
64	 58.33	-1	66326..66829	-	167	209883224	-	OCAR_4065	-	hypothetical protein
65	 60.18	0	66906..67922	-	338	209883225	-	OCAR_4066	-	bordetella uptake protein
66	 53.51	-2	67919..68032	-	37	209883226	-	OCAR_4067	-	hypothetical protein
67	 58.26	-1	68138..69184	-	348	209883227	-	OCAR_4068	-	twin-arginine translocation pathway signal
68	 64.62	0	69193..71094	-	633	209883228	cobT	OCAR_4069	-	cobaltochelatase, CobT subunit
69	 62.15	0	71100..72095	-	331	209883229	cobS	OCAR_4070	-	cobaltochelatase, CobS subunit
70	 60.33	0	72517..73179	-	220	209883230	-	OCAR_4071	-	heat shock protein DnaJ
71	 62.17	0	73333..73599	+	88	209883231	-	OCAR_4072	-	BolA family protein
72	 62.95	0	73629..74300	-	223	209883232	-	OCAR_4073	-	Mg2+ and Co2+ transporter CorB family
73	 61.35	0	74300..74938	-	212	209883233	-	OCAR_4074	-	CBS domain containing protein
74	 64.86	0	74948..76165	-	405	209883234	aroB	OCAR_4075	-	3-dehydroquinate synthase
75	 65.89	0	76126..76767	-	213	209883235	aroK	OCAR_4076	-	shikimate kinase
76	 59.90	0	76842..77048	+	68	209883236	-	OCAR_4077	-	hypothetical protein
77	 63.51	0	77068..78018	+	316	209883237	xerD	OCAR_4078	-	tyrosine recombinase XerD
78	 64.80	0	78136..79098	+	320	209883238	accA	OCAR_4079	-	acetyl-CoA carboxylase
79	 64.81	0	79289..80740	+	483	209883239	-	OCAR_4080	-	pollen allergen Poa pIX/Phl pVI
80	 62.53	0	81210..81620	+	136	209883240	-	OCAR_4081	-	hypothetical protein
81	 62.46	0	81698..84523	-	941	209883241	secA	OCAR_4082	-	preprotein translocase, SecA subunit
82	 64.35	0	84890..85795	+	301	209883242	-	OCAR_4083	-	PpiC-type peptidyl-prolyl cis-trans isomerase
83	 65.47	0	86072..87325	+	417	209883244	argJ	OCAR_4085	-	arginine biosynthesis bifunctional protein ArgJ
84	 53.19	-2	87303..87443	-	46	209883243	-	OCAR_4084	-	hypothetical protein
85	 65.17	0	87477..87878	+	133	209883245	-	OCAR_4086	-	NTP pyrophosphohydrolase
86	 65.61	0	88026..88874	-	282	209883246	-	OCAR_4087	-	methyltransferase
87	 69.41	+1	88963..89799	+	278	209883247	-	OCAR_4088	-	phosphoribosyltransferase
88	 61.23	0	89831..90106	+	91	209883248	grxC	OCAR_4089	-	glutaredoxin 3
89	 66.55	+1	90103..90984	+	293	209883249	-	OCAR_4090	-	hydrolase Sll0601
90	 62.50	0	90981..91436	+	151	209883250	-	OCAR_4091	-	hypothetical protein
91	 63.77	0	91497..92393	-	298	209883251	-	OCAR_4092	-	permeases of the drug/metabolite transporter
92	 63.40	0	92491..93255	-	254	209883252	ubiG	OCAR_4093	-	3-demethylubiquinone-9 3-O-methyltransferase
93	 63.68	0	93271..93738	-	155	209883253	-	OCAR_4094	-	membrane-flanked domain
94	 63.40	0	93879..95135	+	418	209883254	-	OCAR_4095	-	asparate kinase, monofunctional class
95	 64.92	0	95188..95874	+	228	209883255	-	OCAR_4096	-	hypothetical protein
96	 66.18	0	96023..98260	+	745	209883256	ptsP	OCAR_4097	-	phosphoenolpyruvate-protein phosphotransferase
97	 65.00	0	98312..99388	+	358	209883257	prfA	OCAR_4098	-	peptide chain release factor 1
98	 66.09	0	99385..100257	+	290	209883258	hemK	OCAR_4099	-	protein-(glutamine-N5) methyltransferase
99	 66.67	+1	100784..101473	+	229	209883259	-	OCAR_4100	-	hypothetical protein
100	 65.46	0	101502..102245	-	247	209883260	-	OCAR_4101	-	methyltransferase type 11
62.38	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.