IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.55   STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.75	+1	111..1154	+	347	58584262	-	Wbm0001	-	uroporphyrinogen-III decarboxylase
2	 39.20	+1	1216..2409	+	397	58584263	-	Wbm0002	-	aspartate aminotransferase
3	 30.21	-1	2921..3112	-	63	58584264	-	Wbm0003	-	hypothetical protein
4	 36.47	0	3826..5037	+	403	58584265	-	Wbm0004	-	major facilitator superfamily permease
5	 40.30	+1	5087..6364	+	425	58584266	-	Wbm0005	-	glycine/serine hydroxymethyltransferase
6	 35.51	0	7472..8665	-	397	58584267	-	Wbm0006	-	hypothetical protein
7	 36.38	0	8826..9710	+	294	58584268	era	Wbm0007	-	GTP-binding protein Era
8	 35.02	0	9703..10530	+	275	58584269	-	Wbm0008	-	3'-5' exonuclease
9	 22.58	-2	11373..11558	-	61	58584270	-	Wbm0009	-	hypothetical protein
10	 37.11	0	12128..14086	+	652	58584271	-	Wbm0010	-	outer membrane protein
11	 34.98	0	16618..17835	-	405	58584272	-	Wbm0011	-	major facilitator superfamily permease
12	 37.93	+1	17935..19761	-	608	58584273	aspS	Wbm0012	-	aspartyl-tRNA synthetase
13	 36.97	0	20038..20367	+	109	58584274	-	Wbm0013	-	hypothetical protein
14	 34.94	0	20371..20991	+	206	58584275	-	Wbm0014	-	cytochrome c biogenesis protein CcmA
15	 35.03	0	21396..22517	-	373	58584276	-	Wbm0015	-	cell division membrane protein, FtsW
16	 34.08	0	22569..24032	-	487	58584277	-	Wbm0016	-	putative monovalent cation/H+ antiporter subunit D
17	 33.97	0	24097..24411	+	104	58584278	-	Wbm0017	-	NADH:ubiquinone oxidoreductase subunit
18	 34.65	0	24414..24869	+	151	58584279	-	Wbm0018	-	ABC-type transport system involved in resistance to organic solvents, periplasmic component
19	 35.93	0	25805..28072	-	755	58584280	-	Wbm0019	-	polynucleotide phosphorylase/polyadenylase
20	 34.80	0	28087..28359	-	90	58584281	rpsO	Wbm0020	-	30S ribosomal protein S15
21	 37.38	0	30740..31900	-	386	58584282	-	Wbm0021	-	cysteine sulfinate desulfinase/cysteine desulfurase
22	 37.63	+1	32034..32732	+	232	58584283	-	Wbm0022	-	alpha/beta fold family hydrolase
23	 35.26	0	32933..33607	-	224	58584284	-	Wbm0023	-	peptide ABC transporter ATPase
24	 32.89	0	33647..34096	-	149	58584285	-	Wbm0024	-	HesB/YadR/YfhF family protein
25	 34.83	0	34144..35343	+	399	58584286	-	Wbm0025	-	dGTP triphosphohydrolase
26	 36.94	0	35343..36479	+	378	58584287	-	Wbm0026	-	pyrimidine deaminase and reductase
27	 35.90	0	36685..36879	-	64	58584288	-	Wbm0027	-	hypothetical protein
28	 38.13	+1	37566..38837	+	423	58584289	-	Wbm0028	-	cysteine desulfurase
29	 33.73	0	39212..39460	+	82	58584290	-	Wbm0029	-	hypothetical protein
30	 35.06	0	39561..39791	+	76	58584291	-	Wbm0030	-	hypothetical protein
31	 32.47	0	40246..41400	-	384	58584292	-	Wbm0031	-	parvulin-like peptidyl-prolyl isomerase, SurA
32	 37.02	0	41626..42954	+	442	58584293	trmE	Wbm0032	-	tRNA modification GTPase TrmE
33	 30.77	-1	44876..45070	+	64	58584294	-	Wbm0033	-	hypothetical protein
34	 34.20	0	45666..46010	+	114	58584295	-	Wbm0034	-	hypothetical protein
35	 27.23	-2	45991..46203	+	70	58584296	-	Wbm0035	-	hypothetical protein
36	 38.41	+1	46596..46871	+	91	58584297	-	Wbm0036	-	hypothetical protein
37	 36.92	0	47028..49478	+	816	58584298	-	Wbm0037	-	topoisomerase IA, TopA
38	 35.56	0	49542..50351	-	269	58584299	-	Wbm0038	-	sulfurtransferase
39	 33.08	0	50473..52071	+	532	58584300	-	Wbm0039	-	ABC-type Fe3+ transport system, permease component
40	 35.31	0	52095..52499	-	134	58584301	apaG	Wbm0040	-	ApaG
41	 35.38	0	52604..53677	+	357	58584302	-	Wbm0041	-	phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
42	 35.82	0	54209..55252	-	347	58584303	-	Wbm0042	-	aspartate-semialdehyde dehydrogenase
43	 30.92	-1	55395..55808	+	137	58584304	-	Wbm0043	-	hypothetical protein
44	 37.79	+1	55843..57120	-	425	58584305	-	Wbm0044	-	amino acid transporter
45	 37.78	+1	57222..58457	-	411	58584306	-	Wbm0045	-	amino acid transporter
46	 35.70	0	58809..59738	-	309	58584307	ispH	Wbm0046	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
47	 30.46	-1	61327..61674	-	115	58584308	-	Wbm0047	-	hypothetical protein
48	 35.06	0	61803..62495	-	230	58584309	-	Wbm0048	-	isoprenoid biosynthesis protein
49	 37.35	0	63711..65054	-	447	58584310	-	Wbm0049	-	Signal recognition particle GTPase
50	 33.20	0	65039..66544	-	501	58584311	-	Wbm0050	-	putative monovalent cation/H+ antiporter subunit D
51	 37.37	0	69301..72618	-	1105	58584312	-	Wbm0051	-	NADPH-dependent glutamate synthase beta chain
52	 34.92	0	72664..73104	-	146	58584313	fabZ	Wbm0052	-	(3R)-hydroxymyristoyl-ACP dehydratase
53	 30.12	-1	73122..73682	-	186	58584314	-	Wbm0053	-	Outer membrane protein
54	 31.36	-1	73683..76019	-	778	58584315	-	Wbm0054	-	Outer membrane protein/protective antigen OMA87
55	 34.67	0	76027..77151	-	374	58584316	-	Wbm0055	-	membrane-associated Zn-dependent protease
56	 30.50	-1	77248..77529	+	93	58584317	-	Wbm0056	-	hypothetical protein
57	 29.56	-1	77507..77824	-	105	58584318	-	Wbm0057	-	hypothetical protein
58	 30.47	-1	77897..78175	-	92	58584319	-	Wbm0058	-	nucleoid DNA-binding protein
59	 33.88	0	78199..79851	-	550	58584320	rpsA	Wbm0059	-	30S ribosomal protein S1
60	 35.71	0	80188..80397	+	69	58584321	-	Wbm0060	-	hypothetical protein
61	 38.85	+1	81876..83705	+	609	58584322	-	Wbm0061	-	membrane GTPase involved in stress response
62	 33.05	0	83770..84465	+	231	58584323	-	Wbm0062	-	hypothetical protein
63	 38.00	+1	84582..85589	+	335	58584324	-	Wbm0063	-	ATPase involved in chromosome partitioning
64	 36.01	0	85660..86817	+	385	58584325	-	Wbm0064	-	2-polyprenyl-6-methoxyphenol hydroxylase, FAD-dependent oxidoreductase
65	 31.03	-1	88576..88923	-	115	58584326	-	Wbm0065	-	hypothetical protein
66	 33.33	0	89017..89241	-	74	58584327	-	Wbm0066	-	hypothetical protein
67	 30.63	-1	89238..89459	-	73	58584328	-	Wbm0067	-	hypothetical protein
68	 33.99	0	90084..90389	-	101	58584329	-	Wbm0068	-	hypothetical protein
69	 28.86	-1	90508..90753	-	81	58584330	-	Wbm0069	-	hypothetical protein
70	 33.18	0	92860..94146	+	428	58584331	-	Wbm0070	-	Mg2+/Co2+ transporter
71	 34.50	0	94156..94413	+	85	58584332	-	Wbm0071	-	hypothetical protein
72	 35.64	0	94414..94977	+	187	58584333	-	Wbm0072	-	3-polyprenyl-4-hydroxybenzoate decarboxylase
73	 35.47	0	94981..95868	+	295	58584334	-	Wbm0073	-	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
74	 33.21	0	95919..96713	+	264	58584335	-	Wbm0074	-	xylanase/chitin deacetylase
75	 36.97	0	96704..98269	+	521	58584336	-	Wbm0075	-	cell division protein FtsI
76	 38.59	+1	98390..99568	+	392	58584337	-	Wbm0076	-	WAS family protein
77	 37.48	+1	99667..100944	+	425	58584338	-	Wbm0077	-	prolyl-tRNA synthetase
78	 36.51	0	100941..101318	+	125	58584339	-	Wbm0078	-	phosphopantetheinyl transferase (holo-ACP synthase)
79	 35.86	0	101341..102132	-	263	58584340	-	Wbm0079	-	prolipoprotein diacylglyceryl transferase
80	 31.33	-1	102139..102588	-	149	58584341	smpB	Wbm0080	-	SsrA-binding protein
81	 24.41	-2	103118..103330	+	70	58584342	-	Wbm0081	-	hypothetical protein
82	 31.47	-1	104274..104864	-	196	58584343	-	Wbm0082	-	hypothetical protein
83	 34.17	0	104921..105517	-	198	58584344	-	Wbm0083	-	riboflavin synthase subunit alpha
84	 28.02	-2	105533..105739	-	68	58584345	-	Wbm0084	-	hypothetical protein
85	 29.17	-1	105960..106247	-	95	58584346	-	Wbm0085	-	hypothetical protein
86	 30.26	-1	106982..107209	-	75	58584347	-	Wbm0086	-	hypothetical protein
87	 36.40	0	107354..108397	+	347	58584348	-	Wbm0087	-	phenylalanyl-tRNA synthetase alpha subunit
88	 36.77	0	108416..109636	+	406	58584349	-	Wbm0088	-	N-acetylglucosamine-1-phosphate uridyltransferase
89	 35.68	0	111715..112182	-	155	58584350	-	Wbm0089	-	hypothetical protein
90	 32.83	0	112667..112864	-	65	58584351	-	Wbm0090	-	hypothetical protein
91	 25.93	-2	113096..113338	-	80	58584352	-	Wbm0091	-	hypothetical protein
92	 36.91	0	113479..114093	+	204	58584353	-	Wbm0092	-	50S ribosomal protein L25/general stress protein Ctc
93	 34.61	0	114093..114641	+	182	58584354	-	Wbm0093	-	peptidyl-tRNA hydrolase
94	 35.42	0	115628..115867	+	79	58584355	-	Wbm0094	-	hypothetical protein
95	 31.88	0	115943..116149	+	68	58584356	-	Wbm0095	-	hypothetical protein
96	 32.64	0	116557..116988	+	143	58584357	-	Wbm0096	-	membrane protein WF-2
97	 37.54	+1	120801..121703	+	300	58584358	-	Wbm0097	-	fructose-bisphosphate aldolase
98	 36.12	0	124063..125103	+	346	58584359	-	Wbm0098	-	dihydroorotate dehydrogenase 2
99	 33.61	0	125151..125882	+	243	58584360	-	Wbm0099	-	dsRNA-specific ribonuclease
100	 33.21	0	127571..128380	-	269	58584361	-	Wbm0100	-	Outer surface protein Wsp
34.55	MEAN

2.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.