IslandPath Analysis: Flavobacterium johnsoniae UW101



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.45   STD DEV: 3.97
Flavobacterium johnsoniae UW101, complete genome - 1..6096872
5017 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.33	0	96..1145	+	349	146297767	-	Fjoh_0001	-	riboflavin biosynthesis protein RibD
2	 30.68	0	1138..1740	+	200	146297768	-	Fjoh_0002	-	HAD family hydrolase
3	 32.54	0	1918..2550	+	210	146297769	-	Fjoh_0003	-	hypothetical protein
4	 36.30	0	2582..2986	-	134	146297770	-	Fjoh_0004	-	thioesterase superfamily protein
5	 34.03	0	3174..4601	+	475	146297771	-	Fjoh_0005	-	chromosomal replication initiator protein DnaA
6	 35.26	0	4610..5077	+	155	146297772	-	Fjoh_0006	-	protein tyrosine phosphatase
7	 34.45	0	5133..5846	+	237	146297773	-	Fjoh_0007	-	uroporphyrin-III C/tetrapyrrole methyltransferase
8	 29.29	-1	5860..6378	+	172	146297774	-	Fjoh_0008	-	hypothetical protein
9	 33.60	0	6362..7489	+	375	146297775	-	Fjoh_0009	-	aminotransferase, class I and II
10	 38.32	0	7564..8445	+	293	146297776	-	Fjoh_0010	-	short-chain dehydrogenase/reductase SDR
11	 34.48	0	8709..9317	+	202	146297777	-	Fjoh_0011	-	uridine kinase
12	 29.13	-1	9424..9756	+	110	146297778	-	Fjoh_0012	-	septum formation initiator
13	 32.82	0	9774..11135	+	453	146297779	-	Fjoh_0013	-	methylmalonyl-CoA mutase
14	 38.76	+1	11178..13313	+	711	146297780	-	Fjoh_0014	-	methylmalonyl-CoA mutase
15	 33.80	0	13364..14008	-	214	146297781	-	Fjoh_0015	-	hypothetical protein
16	 31.79	0	14542..15576	-	344	146297782	-	Fjoh_0016	-	aminodeoxychorismate lyase
17	 32.58	0	15587..16120	-	177	146297783	-	Fjoh_0017	-	GCN5-related N-acetyltransferase
18	 34.74	0	16177..16959	-	260	146297784	-	Fjoh_0018	-	diaminopimelate epimerase
19	 33.98	0	17134..18534	+	466	146297785	-	Fjoh_0019	-	protease Do
20	 33.06	0	18745..20193	+	482	146297786	-	Fjoh_0020	-	glyceraldehyde-3-phosphate dehydrogenase
21	 31.15	0	20255..20713	-	152	146297787	-	Fjoh_0021	-	AsnC family transcriptional regulator
22	 37.00	0	20915..22033	+	372	146297788	-	Fjoh_0022	-	alanine dehydrogenase
23	 32.78	0	22159..23778	-	539	146297789	-	Fjoh_0023	-	type I phosphodiesterase/nucleotide pyrophosphatase
24	 36.21	0	30377..32323	+	648	146297790	-	Fjoh_0024	-	threonyl-tRNA synthetase
25	 31.79	0	32505..32894	+	129	146297791	-	Fjoh_0025	-	initiation factor 3
26	 30.81	0	32999..33196	+	65	146297792	rpmI	Fjoh_0026	-	50S ribosomal protein L35
27	 36.52	0	33382..33726	+	114	146297793	rplT	Fjoh_0027	-	50S ribosomal protein L20
28	 33.68	0	33849..34421	+	190	146297794	-	Fjoh_0028	-	cyclic nucleotide-binding protein
29	 33.33	0	34500..34934	+	144	146297795	-	Fjoh_0029	-	alkylhydroperoxidase
30	 28.16	-1	35107..36825	+	572	146297796	-	Fjoh_0030	-	putative signal transduction histidine kinase
31	 27.46	-1	36826..38595	+	589	146297797	-	Fjoh_0031	-	putative signal transduction histidine kinase
32	 27.21	-1	38597..40375	+	592	146297798	-	Fjoh_0032	-	TPR repeat-containing protein
33	 28.25	-1	40386..41054	+	222	146297799	-	Fjoh_0033	-	response regulator receiver protein
34	 31.11	0	41418..42227	+	269	146297800	-	Fjoh_0034	-	endonuclease/exonuclease/phosphatase
35	 34.29	0	42230..43489	-	419	146297801	-	Fjoh_0035	-	hypothetical protein
36	 29.43	-1	43829..44494	-	221	146297802	-	Fjoh_0036	-	two component LuxR family transcriptional regulator
37	 30.21	-1	44594..44689	-	31	146297803	-	Fjoh_0037	-	hypothetical protein
38	 29.95	-1	44795..45385	-	196	146297804	-	Fjoh_0038	-	histidine kinase, dimerisation and phosphoacceptor region
39	 25.65	-2	45393..46043	-	216	146297805	-	Fjoh_0039	-	hypothetical protein
40	 36.67	0	46070..46429	-	119	146297806	-	Fjoh_0040	-	hypothetical protein
41	 37.73	0	46609..48153	-	514	146297807	-	Fjoh_0041	-	replicative DNA helicase
42	 38.16	0	48295..49248	-	317	146297808	-	Fjoh_0042	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
43	 31.54	0	49361..50251	-	296	146297809	-	Fjoh_0043	-	hypothetical protein
44	 30.95	0	50238..51326	-	362	146297810	-	Fjoh_0044	-	permease YjgP/YjgQ family protein
45	 37.05	0	51394..52524	-	376	146297811	-	Fjoh_0045	-	queuine tRNA-ribosyltransferase
46	 33.23	0	52684..53607	+	307	146297812	-	Fjoh_0046	-	YdjC family protein
47	 33.33	0	53710..54012	+	100	146297813	-	Fjoh_0047	-	hypothetical protein
48	 37.93	0	54263..55111	+	282	146297814	-	Fjoh_0048	-	transketolase domain-containing protein
49	 37.11	0	55185..56138	+	317	146297815	-	Fjoh_0049	-	transketolase, central region
50	 32.22	0	56332..57498	-	388	146297816	-	Fjoh_0050	-	hypothetical protein
51	 35.10	0	57578..57973	+	131	146297817	-	Fjoh_0051	-	RNA-binding S4 domain-containing protein
52	 33.33	0	58048..58548	+	166	146297818	-	Fjoh_0052	-	phosphoribosyltransferase
53	 32.18	0	58540..59058	-	172	146297819	-	Fjoh_0053	-	shikimate kinase
54	 30.12	-1	59754..60158	+	134	146297820	-	Fjoh_0054	-	hypothetical protein
55	 34.33	0	60603..61103	+	166	146297821	-	Fjoh_0055	-	TPR repeat-containing protein
56	 30.67	0	61310..62209	+	299	146297822	-	Fjoh_0056	-	MerR family transcriptional regulator
57	 35.51	0	62247..63713	+	488	146297823	-	Fjoh_0057	-	phytoene dehydrogenase-related protein
58	 35.36	0	63718..64557	+	279	146297824	-	Fjoh_0058	-	squalene/phytoene synthase
59	 32.88	0	64793..65233	+	146	146297825	-	Fjoh_0059	-	carotene hydroxylase
60	 33.53	0	65265..65774	+	169	146297826	-	Fjoh_0060	-	hypothetical protein
61	 35.49	0	65967..67262	+	431	146297827	-	Fjoh_0061	-	deoxyribodipyrimidine photo-lyase
62	 34.48	0	67426..68730	-	434	146297828	-	Fjoh_0062	-	hypothetical protein
63	 32.43	0	68727..69389	-	220	146297829	-	Fjoh_0063	-	hypothetical protein
64	 33.88	0	69488..70399	+	303	146297830	-	Fjoh_0064	-	hypothetical protein
65	 29.14	-1	70404..70976	-	190	146297831	-	Fjoh_0065	-	hypothetical protein
66	 34.60	0	71319..71714	-	131	146297832	-	Fjoh_0066	-	glyoxalase/bleomycin resistance protein/dioxygenase
67	 35.70	0	71758..72306	-	182	146297833	-	Fjoh_0067	-	thioesterase superfamily protein
68	 34.50	0	72495..73868	-	457	146297834	-	Fjoh_0068	-	hypothetical protein
69	 31.92	0	74067..74915	+	282	146297835	-	Fjoh_0069	-	hypothetical protein
70	 31.83	0	74923..75321	+	132	146297836	-	Fjoh_0070	-	hypothetical protein
71	 31.59	0	75409..75924	+	171	146297837	-	Fjoh_0071	-	ECF subfamily RNA polymerase sigma-24 factor
72	 32.47	0	75921..77897	+	658	146297838	-	Fjoh_0072	-	hypothetical protein
73	 33.33	0	77940..78467	+	175	146297839	-	Fjoh_0073	-	hypothetical protein
74	 34.39	0	78528..81929	-	1133	146297840	-	Fjoh_0074	-	endonuclease/exonuclease/phosphatase
75	 42.50	+2	82241..82993	-	250	146297841	-	Fjoh_0075	-	short-chain dehydrogenase/reductase SDR
76	 30.57	0	83145..83615	-	156	146297842	-	Fjoh_0076	-	hypothetical protein
77	 37.52	0	83941..84513	+	190	146297843	-	Fjoh_0077	-	pseudouridine synthase
78	 35.75	0	84535..84990	+	151	146297844	-	Fjoh_0078	-	tRNA/rRNA methyltransferase (SpoU)
79	 28.13	-1	85025..85831	+	268	146297845	-	Fjoh_0079	-	hypothetical protein
80	 34.75	0	85828..86604	-	258	146297846	-	Fjoh_0080	-	ABC transporter related
81	 26.81	-1	86696..87109	-	137	146297847	-	Fjoh_0081	-	hypothetical protein
82	 37.05	0	87184..88152	-	322	146297848	-	Fjoh_0082	-	transport system permease protein
83	 34.47	0	88214..89356	-	380	146297849	-	Fjoh_0083	-	periplasmic binding protein
84	 36.36	0	89452..89814	+	120	146297850	-	Fjoh_0084	-	hypothetical protein
85	 25.93	-2	89845..90222	+	125	146297851	-	Fjoh_0085	-	hypothetical protein
86	 36.47	0	90253..90762	+	169	146297852	-	Fjoh_0086	-	cobalbumin biosynthesis enzyme
87	 36.07	0	90927..92606	+	559	146297853	-	Fjoh_0087	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
88	 25.69	-2	92674..93105	+	143	146297854	-	Fjoh_0088	-	hypothetical protein
89	 33.59	0	93316..94101	+	261	146297855	-	Fjoh_0089	-	cobalamin 5'-phosphate synthase
90	 37.45	0	94086..94619	+	177	146297856	-	Fjoh_0090	-	phosphoglycerate mutase
91	 33.33	0	94955..96778	+	607	146297857	-	Fjoh_0091	-	TonB-dependent receptor
92	 33.15	0	96784..97851	+	355	146297858	-	Fjoh_0092	-	hypothetical protein
93	 33.33	0	97909..99381	-	490	146297859	-	Fjoh_0093	-	peptidase S41
94	 35.49	0	99532..100041	+	169	146297860	-	Fjoh_0094	-	ECF subfamily RNA polymerase sigma-24 factor
95	 32.68	0	100028..100483	+	151	146297861	-	Fjoh_0095	-	hypothetical protein
96	 33.14	0	100500..101027	+	175	146297862	-	Fjoh_0096	-	hypothetical protein
97	 29.81	-1	101030..101569	+	179	146297863	-	Fjoh_0097	-	hypothetical protein
98	 35.09	0	101720..102118	+	132	146297864	-	Fjoh_0098	-	YiaAB two helix domain-containing protein
99	 36.66	0	102192..105047	-	951	146297865	carB	Fjoh_0099	-	carbamoyl phosphate synthase large subunit
100	 36.42	0	105192..105353	-	53	146297866	-	Fjoh_0100	-	ribosomal protein L34
34.45	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.