IslandPath Analysis: Yersinia enterocolitica subsp. enterocolitica 8081



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.74   STD DEV: 4.70
Yersinia enterocolitica subsp. enterocolitica 8081, complete genome - 1..4615899
3979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.12	0	270..710	-	146	123440404	-	YE0001	-	flavodoxin
2	 41.77	-1	802..1263	-	153	123440405	asnC	YE0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1449..2441	+	330	123440406	asnA	YE0003	-	asparagine synthetase AsnA
4	 41.82	-1	2595..3266	+	223	123440407	-	YE0004	-	hypothetical protein
5	 49.15	0	3276..4742	-	488	123440408	yieM	YE0005	-	hypothetical protein
6	 46.06	0	4746..6254	-	502	123440409	-	YE0006	-	regulatory ATPase RavA
7	 48.38	0	6708..8435	+	575	123440410	trkD	YE0007	-	potassium transport protein Kup
8	 46.43	0	8606..9025	+	139	123440411	-	YE0008	-	D-ribose pyranase
9	 47.44	0	9033..10535	+	500	123440412	rbsA	YE0009	-	D-ribose transporter ATP binding protein
10	 49.28	0	10623..11588	+	321	123440413	rbsC	YE0010	-	ribose ABC transporter permease protein
11	 46.96	0	11760..12647	+	295	123440414	prlB	YE0011	-	D-ribose transporter subunit RbsB
12	 49.51	0	12811..13737	+	308	123440415	rbsK	YE0012	-	ribokinase
13	 48.60	0	13740..14741	+	333	123440416	rbsR	YE0012A	-	transcriptional repressor RbsR
14	 47.86	0	14738..16162	-	474	123440417	-	YE0013	-	putative membrane transport protein
15	 46.38	0	16237..16926	-	229	123440418	-	YE0014	-	putative GntR-famly transcriptional regulator
16	 40.72	-1	23194..23721	-	175	123440419	mobB	YE0016	-	molybdopterin-guanine dinucleotide biosynthesis protein B
17	 42.83	-1	23718..24317	-	199	123440420	mobA	YE0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A
18	 39.63	-1	24462..24731	+	89	123440421	-	YE0018	-	hypothetical protein
19	 48.33	0	24823..25809	+	328	123440422	-	YE0019	-	serine/threonine protein kinase
20	 42.63	-1	25856..26479	+	207	123440423	dsbA	YE0020	-	periplasmic protein disulfide isomerase I
21	 46.98	0	27070..29868	+	932	123440424	polA	YE0021	-	DNA polymerase I
22	 45.72	0	30302..30955	-	217	123440425	-	YE0022	-	GTPase EngB
23	 48.85	0	31718..32284	+	188	123440426	-	YE0023	-	hypothetical protein
24	 45.85	0	32467..33840	+	457	123440427	hemN	YE0024	-	coproporphyrinogen III oxidase
25	 52.80	+1	33989..35401	-	470	123440428	glnG	YE0025	-	nitrogen regulation protein NR(I)
26	 49.43	0	35409..36458	-	349	123440429	glnL	YE0026	-	nitrogen regulation protein NR(II)
27	 49.43	0	36607..38016	-	469	123440430	glnA	YE0027	-	glutamine synthetase
28	 40.54	-1	38201..38311	-	36	123440431	-	YE0028	-	hypothetical protein
29	 49.62	0	38529..40352	+	607	123440432	bipA	YE0029	-	putative GTPase
30	 48.30	0	40648..41235	+	195	123440433	-	YE0030	-	phosphatase
31	 46.24	0	41328..42218	+	296	123440434	rbn	YE0031	-	ribonuclease BN
32	 48.17	0	42225..42662	+	145	123440435	-	YE0032	-	D-tyrosyl-tRNA deacylase
33	 48.27	0	42914..43837	+	307	123440436	-	YE0033	-	hypothetical protein
34	 33.62	-2	44431..45117	+	228	123440437	-	YE0035	-	LuxR family transcription regulatory protein
35	 36.68	-2	45147..45833	+	228	123440438	-	YE0036	-	LuxR family transcription regulatory protein
36	 35.23	-2	45863..46549	+	228	123440439	-	YE0037	-	LuxR family transcription regulatory protein
37	 34.79	-2	46579..47265	+	228	123440440	-	YE0038	-	LuxR family transcription regulatory protein
38	 35.66	-2	47294..47980	+	228	123440441	-	YE0039	-	LuxR family transcription regulatory protein
39	 47.78	0	48077..49786	-	569	123440442	-	YE0040	-	hypothetical protein
40	 50.36	0	49933..51318	-	461	123440443	-	YE0041	-	putative membrane permease
41	 49.47	0	51557..52771	+	404	123440444	gltC	YE0042	-	sodium/glutamate symport carrier protein
42	 50.96	0	52840..54921	-	693	123440445	recG	YE0043	-	ATP-dependent DNA helicase RecG
43	 47.47	0	54922..55614	-	230	123440446	spoU	YE0044	-	tRNA guanosine-2'-O-methyltransferase
44	 49.03	0	55620..57722	-	700	123440447	spoT	YE0045	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
45	 48.55	0	57741..58016	-	91	123440448	rpoZ	YE0046	-	DNA-directed RNA polymerase subunit omega
46	 46.79	0	58071..58694	-	207	123440449	gmk	YE0047	-	guanylate kinase
47	 46.41	0	58977..60674	+	565	123440450	ligB	YE0048	-	NAD-dependent DNA ligase LigB
48	 45.31	0	60692..61309	-	205	123440451	-	YE0049	-	hypothetical protein
49	 44.20	0	61529..62080	+	183	123440452	-	YE0050	-	hypothetical protein
50	 38.90	-1	62176..63360	-	394	123440453	cru	YE0051	-	nucleoside permease
51	 45.30	0	63619..64512	+	297	123440454	-	YE0052	-	enoyl-CoA hydratase
52	 43.41	0	64538..66532	-	664	123440455	-	YE0053	-	RNase II stability modulator
53	 39.83	-1	67055..67885	-	276	123440456	-	YE0055	-	metallo-beta-lactamase superfamily protein
54	 48.84	0	68287..69150	-	287	123440457	-	YE0057	-	hypothetical protein
55	 51.60	0	69277..69993	+	238	123440458	rph	YE0058	-	ribonuclease PH
56	 47.98	0	70145..70786	+	213	123440459	pyrE	YE0059	-	orotate phosphoribosyltransferase
57	 48.24	0	70864..71460	-	198	123440460	slmA	YE0060	-	nucleoid occlusion protein
58	 46.49	0	71581..72036	-	151	123440461	dut	YE0061	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
59	 51.09	0	72017..73204	-	395	123440462	dfp	YE0062	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
60	 46.04	0	73442..74110	+	222	123440463	radC	YE0063	-	DNA repair protein RadC
61	 52.32	0	74374..74610	+	78	123440464	rpmB	YE0064	-	50S ribosomal protein L28
62	 40.48	-1	74622..74789	+	55	123440465	rpmG	YE0065	-	50S ribosomal protein L33
63	 48.77	0	74876..75685	+	269	123440466	fpg	YE0066	-	formamidopyrimidine-DNA glycosylase
64	 47.50	0	75792..76271	-	159	123440467	coaD	YE0067	-	phosphopantetheine adenylyltransferase
65	 47.25	0	76268..77050	-	260	123440468	kdtX	YE0068	-	lipopolysaccharide core biosynthesis glycosyl transferase
66	 50.08	0	77051..78328	-	425	123440469	kdtA	YE0069	-	3-deoxy-D-manno-octulosonic-acid transferase
67	 50.21	0	78869..79834	-	321	123440470	rfa-2	YE0070	-	ADP-heptose:LPS heptosyl transferase I
68	 50.14	0	79834..80898	-	354	123440471	rfaF	YE0071	-	ADP-heptose:LPS heptosyltransferase II
69	 47.59	0	80929..81861	-	310	123440472	rfaD	YE0072	-	ADP-L-glycero-D-mannoheptose-6-epimerase
70	 48.93	0	82105..83316	+	403	123440473	kbl	YE0073	-	2-amino-3-ketobutyrate coenzyme A ligase
71	 47.86	0	83341..84366	+	341	123440474	tdh	YE0074	-	L-threonine 3-dehydrogenase
72	 49.03	0	84557..85582	-	341	123440475	-	YE0075	-	hypothetical protein
73	 49.70	0	85606..86760	-	384	123440476	-	YE0076	-	hypothetical protein
74	 49.74	0	86983..88530	-	515	123440477	-	YE0077	-	phosphoglyceromutase
75	 48.74	0	88772..89206	+	144	123440478	-	YE0078	-	hypothetical protein
76	 50.60	0	89256..89504	+	82	123440479	grxC	YE0079	-	glutaredoxin 3
77	 50.74	0	89596..90066	+	156	123440480	secB	YE0080	-	preprotein translocase subunit SecB
78	 52.75	+1	90066..91085	+	339	123440481	gpsA	YE0081	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
79	 50.12	0	91211..92032	+	273	123440482	cysE	YE0082	-	serine acetyltransferase
80	 48.61	0	92213..92716	-	167	123440483	-	YE0083	-	putative methyltransferase
81	 52.55	+1	92988..93986	+	332	123440484	-	YE0084	-	bifunctional regulatory protein/DNA repair protein
82	 51.34	0	94056..95432	-	458	123440485	cpxA	YE0085	-	two-component sensor protein
83	 48.21	0	95429..96127	-	232	123440486	cpxR	YE0086	-	DNA-binding transcriptional regulator CpxR
84	 53.12	+1	96348..96812	+	154	123440487	cpxP	YE0087	-	periplasmic stress adaptor protein CpxP
85	 48.28	0	96944..97846	+	300	123440488	fieF	YE0088	-	ferrous iron efflux protein F
86	 48.39	0	98096..99091	+	331	123440489	pfkA	YE0089	-	6-phosphofructokinase
87	 55.96	+1	99139..100473	-	444	123440490	-	YE0090	-	transposase for insertion sequence element IS1660
88	 46.57	0	100712..101701	+	329	123440491	sbp1	YE0091	-	sulfate transporter subunit
89	 43.23	0	101902..102093	+	63	123440492	-	YE0092	-	hypothetical protein
90	 49.48	0	102318..103085	-	255	123440493	tpiA	YE0093	-	triosephosphate isomerase
91	 49.57	0	103214..103798	-	194	123440494	-	YE0094	-	hypothetical protein
92	 50.11	0	104103..104537	+	144	123440495	-	YE0095	-	hypothetical protein
93	 51.81	0	104780..105526	-	248	123440496	fpr	YE0096	-	ferredoxin-NADP reductase
94	 54.09	+1	105845..107029	+	394	123440497	emrD	YE0097	-	multidrug resistance protein D
95	 51.34	0	107115..108125	-	336	123440498	glpX	YE0098	-	fructose 1,6-bisphosphatase II
96	 52.10	0	108307..109830	-	507	123440499	glpK	YE0099	-	glycerol kinase
97	 50.53	0	109907..110755	-	282	123440500	glpF	YE0100	-	glycerol uptake facilitator protein
98	 44.17	0	111350..111589	+	79	123440501	-	YE0101	-	hypothetical protein
99	 45.47	0	111726..112211	-	161	123440502	menG	YE0102	-	ribonuclease activity regulator protein RraA
100	 50.29	0	112342..113196	-	284	123440503	menA	YE0103	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
47.74	MEAN

4.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.