version 1.0
Vibrio fischeri MJ11 chromosome I, complete sequence - 1..2905029 2590 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 35.86 -1 313..747 - 144 197334190 - VFMJ11_0001 - protein MioC 2 42.54 +1 809..2176 - 455 197334085 trmE VFMJ11_0002 - tRNA modification GTPase TrmE 3 40.84 0 2274..3899 - 541 197333980 - VFMJ11_0003 - inner membrane protein OxaA 4 42.28 0 4126..4449 - 107 197333937 rnpA VFMJ11_0004 - ribonuclease P protein component 5 45.93 +2 4495..4629 - 44 197334034 rpmH VFMJ11_0005 - ribosomal protein L34 6 39.84 0 4815..5552 - 245 197334117 - VFMJ11_0006 - L-cystine import ATP-binding protein TcyN 7 39.43 0 5549..6220 - 223 197333922 - VFMJ11_0007 - cystine transport system permease protein 8 37.05 0 6374..7126 - 250 197334002 - VFMJ11_0008 - cystine-binding protein 9 39.97 0 7492..8832 + 446 197334133 dnaA VFMJ11_0009 - chromosomal replication initiator protein DnaA 10 40.51 0 8865..9965 + 366 197334198 dnaN VFMJ11_0010 - DNA polymerase III, beta subunit 11 41.11 0 9979..11058 + 359 197334005 - VFMJ11_0011 - DNA replication and repair protein RecF 12 41.69 0 11076..13493 + 805 197334084 gyrB VFMJ11_0012 - DNA gyrase, B subunit 13 39.08 0 13917..14351 + 144 197334199 - VFMJ11_0013 - small heat shock protein 14 40.06 0 14555..15802 - 415 197333917 - VFMJ11_0014 - valine--pyruvate aminotransferase 15 43.65 +1 16031..16951 + 306 197333992 glyQ VFMJ11_0015 - glycyl-tRNA synthetase, alpha subunit 16 41.36 0 16954..19020 + 688 197334221 glyS VFMJ11_0016 - glycyl-tRNA synthetase, beta subunit 17 39.37 0 19166..20806 + 546 197333981 - VFMJ11_0017 - alpha-amylase 18 38.89 0 20941..21192 + 83 197334208 - VFMJ11_0018 - NADH dehydrogenase subunit ii-related protein 19 40.08 0 21238..21489 - 83 197334174 - VFMJ11_0019 - sulfurtransferase TusA 20 34.38 -1 21675..21866 + 63 197333958 - VFMJ11_0020 - hypothetical protein 21 38.85 0 22014..22955 + 313 197333985 - VFMJ11_0021 - transcriptional regulator, LysR family 22 42.61 +1 23054..24034 - 326 197334120 - VFMJ11_0022 - protein YhdH 23 43.73 +1 24794..25957 - 387 197334155 fadA VFMJ11_0023 - acetyl-CoA C-acyltransferase FadA 24 41.23 0 25971..28148 - 725 197334151 fadB VFMJ11_0024 - fatty oxidation complex, alpha subunit FadB 25 40.13 0 28391..29008 + 205 197334201 - VFMJ11_0025 - hypothetical protein 26 40.12 0 29065..30522 + 485 197334156 - VFMJ11_0026 - Trk system potassium uptake protein TrkH 27 38.10 0 30555..31079 + 174 197334103 - VFMJ11_0027 - protoporphyrinogen oxidase 28 36.82 0 31708..34461 + 917 197334035 - VFMJ11_0029 - zinc protease 29 34.87 -1 34543..34737 + 64 197333898 - VFMJ11_0030 - hypothetical protein 30 39.93 0 35035..36414 + 459 197334244 - VFMJ11_0031 - chloride channel protein 31 37.72 0 36475..36588 + 37 197334148 - VFMJ11_0032 - hypothetical protein 32 42.53 +1 37014..38948 + 644 197333907 thiC VFMJ11_0033 - thiamine biosynthesis protein ThiC 33 41.52 0 39019..39678 + 219 197333936 thiE_2 VFMJ11_0034 - thiamine-phosphate pyrophosphorylase 34 41.01 0 39671..40504 + 277 197334226 - VFMJ11_0035 - adenylyltransferase ThiF 35 37.56 0 40497..40709 + 70 197334050 thiS VFMJ11_0036 - thiamine biosynthesis protein ThiS 36 42.28 0 40711..41481 + 256 197334177 thiG VFMJ11_0037 - thiazole biosynthesis protein ThiG 37 39.53 0 41492..42604 + 370 197334211 thiH VFMJ11_0038 - thiazole biosynthesis protein ThiH 38 41.75 0 42704..44497 - 597 197334078 - VFMJ11_0039 - Xaa-Pro aminopeptidase 39 37.27 0 44599..45564 - 321 197334179 - VFMJ11_0040 - virulence genes transcriptional regulator PhcA 40 41.62 0 45733..46890 + 385 197333902 - VFMJ11_0041 - chloramphenicol resistance protein 41 40.55 0 47012..47302 + 96 197333921 - VFMJ11_0042 - hypothetical protein 42 39.82 0 47390..48298 - 302 197334131 - VFMJ11_0043 - transporter, drug/metabolite exporter family 43 39.71 0 48426..49946 + 506 197334099 - VFMJ11_0044 - DNA recombination protein 44 41.57 0 50003..50767 + 254 197333931 - VFMJ11_0045 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE 45 36.86 0 50779..51402 + 207 197333938 - VFMJ11_0046 - SCP-2 sterol transfer family protein 46 40.61 0 51399..53033 + 544 197334207 ubiB VFMJ11_0047 - 2-polyprenylphenol 6-hydroxylase 47 35.34 -1 53085..53333 + 82 197334147 - VFMJ11_0048 - twin arginine-targeting protein translocase TatA 48 41.99 0 53337..53717 + 126 197334031 - VFMJ11_0049 - sec-independent translocase 49 38.76 0 53720..54475 + 251 197334101 tatC VFMJ11_0050 - twin arginine-targeting protein translocase TatC 50 39.76 0 55843..56604 - 253 197334168 - VFMJ11_0051 - hydrolase, TatD family 51 43.85 +1 56756..57772 + 338 197334052 hemB VFMJ11_0052 - delta-aminolevulinic acid dehydratase 52 42.70 +1 58036..59529 - 497 197334158 - VFMJ11_0053 - exopolyphosphatase 53 43.57 +1 59563..60861 - 432 197334079 - VFMJ11_0054 - ATP-dependent RNA helicase RhlB 54 41.59 0 60974..61300 + 108 197334006 trxA VFMJ11_0055 - thioredoxin 55 42.70 +1 61540..62799 + 419 197334080 rho VFMJ11_0056 - transcription termination factor Rho 56 38.96 0 62958..63953 + 331 197333984 - VFMJ11_0057 - hypothetical protein 57 42.06 0 64095..65939 + 614 197333965 - VFMJ11_0058 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 58 39.77 0 66118..66381 + 87 197334089 - VFMJ11_0059 - phenol hydroxylase P5 protein 59 42.90 +1 66479..67189 + 236 197333973 - VFMJ11_0060 - NAD(P)H-flavin reductase 60 40.42 0 67269..68453 - 394 197334236 - VFMJ11_0061 - HemY protein 61 40.79 0 68450..69643 - 397 197334140 - VFMJ11_0062 - uroporphyrin-III C-methyltransferase 62 41.08 0 69640..70401 - 253 197334036 hemD VFMJ11_0063 - uroporphyrinogen-III synthase 63 45.30 +1 70404..71339 - 311 197333951 hemC VFMJ11_0064 - porphobilinogen deaminase 64 39.83 0 71597..74122 + 841 197333925 cyaA VFMJ11_0065 - adenylate cyclase, class I 65 42.51 +1 74207..76408 + 733 197334239 uvrD VFMJ11_0066 - DNA helicase II 66 38.85 0 76826..77731 - 301 197333890 rarD_2 VFMJ11_0067 - RarD protein 67 41.72 0 77958..79793 + 611 197333996 recQ VFMJ11_0068 - ATP-dependent DNA helicase RecQ 68 38.49 0 79797..80087 + 96 197334053 - VFMJ11_0069 - aminopeptidase N 69 41.98 0 80142..81506 - 454 197334141 glpT VFMJ11_0070 - glycerol-3-phosphate transporter 70 38.54 0 81850..82521 + 223 197334220 - VFMJ11_0071 - inner membrane protein YhhQ 71 40.59 0 83222..86020 + 932 197334225 - VFMJ11_0072 - DNA polymerase I 72 40.59 0 86740..87387 - 215 197333942 ysxC VFMJ11_0073 - ribosome biogenesis GTP-binding protein YsxC 73 42.39 +1 87676..88293 + 205 197334047 - VFMJ11_0074 - cytochrome c4 74 41.59 0 88448..89089 + 213 197333969 - VFMJ11_0075 - 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase 75 40.84 0 89089..89634 + 181 197334137 - VFMJ11_0076 - protein VV1_0896 76 38.62 0 89637..90128 + 163 197333989 - VFMJ11_0077 - putative coproporphyrinogen III oxidase 77 40.76 0 90237..91610 + 457 197333954 hemN VFMJ11_0078 - oxygen-independent coproporphyrinogen III oxidase 78 42.42 +1 92115..92576 - 153 197334062 - VFMJ11_0079 - transcriptional regulator, AsnC family 79 44.49 +1 92717..93496 + 259 197334213 - VFMJ11_0080 - SAM-dependent methyltransferase 80 38.03 0 93493..93918 - 141 197334135 - VFMJ11_0081 - universal stress protein A 81 37.88 0 94101..94628 + 175 197334107 - VFMJ11_0082 - ferritin 82 35.69 -1 94735..95073 + 112 197334153 - VFMJ11_0083 - universal stress protein UspB 83 40.59 0 95122..96306 + 394 197334240 - VFMJ11_0084 - hypothetical protein 84 38.14 0 96423..98918 + 831 197334154 - VFMJ11_0085 - sensory transduction protein kinase 85 38.61 0 98908..99495 - 195 197333987 - VFMJ11_0086 - hypothetical cytosolic protein 86 39.47 0 99507..100517 - 336 197333957 - VFMJ11_0087 - hypothetical outer membrane protein 87 42.45 +1 100674..101309 + 211 197334028 - VFMJ11_0088 - khg/kdpg aldolase 88 36.52 0 101333..103870 - 845 197333927 - VFMJ11_0090 - sensory box/ggdef family protein 89 33.95 -1 103827..103988 + 53 197333919 - VFMJ11_0089 - hypothetical protein 90 41.52 0 104120..105121 - 333 197334009 add VFMJ11_0091 - adenosine deaminase 91 38.22 0 105286..107841 - 851 197334048 - VFMJ11_0092 - sensory box/ggdef family protein 92 41.90 0 107958..109358 - 466 197334076 ntrC VFMJ11_0093 - nitrogen regulation protein 93 40.42 0 109397..110440 - 347 197334242 - VFMJ11_0094 - nitrogen regulation protein NtrB 94 41.34 0 110532..111068 - 178 197333972 - VFMJ11_0095 - hypothetical protein 95 43.76 +1 111318..112727 - 469 197334234 glnA VFMJ11_0096 - glutamine synthetase, type I 96 43.98 +1 113229..115097 + 622 197334122 typA VFMJ11_0097 - GTP-binding protein TypA/BipA 97 38.91 0 115212..116162 + 316 197333895 - VFMJ11_0098 - tRNA-processing ribonuclease BN 98 42.30 0 116134..116568 + 144 197333914 dtd VFMJ11_0099 - D-tyrosyl-tRNA(Tyr) deacylase 99 41.56 0 116751..117650 + 299 197334109 - VFMJ11_0100 - acetyltransferase 100 42.32 0 117906..118595 - 229 197334204 - VFMJ11_0101 - tRNA guanosine-2'-O-methyltransferase 39.17 MEAN 3.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0