IslandPath Analysis: Pelobacter carbinolicus DSM 2380



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.00   STD DEV: 5.35
Pelobacter carbinolicus DSM 2380, complete genome - 1..3665893
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.47	-1	72..1430	+	452	77917619	dnaA	Pcar_0001	-	chromosomal replication initiator protein DnaA
2	 44.77	-1	1680..2798	+	372	77917620	dnaN	Pcar_0002	-	DNA polymerase III, beta subunit
3	 49.82	0	2856..3947	+	363	77917621	recF	Pcar_0003	-	DNA replication and repair protein
4	 51.84	0	3964..6351	+	795	77917622	gyrB	Pcar_0004	-	DNA gyrase, B subunit
5	 53.71	0	6419..8926	+	835	77917623	gyrA	Pcar_0005	-	DNA gyrase, A subunit
6	 53.87	0	8886..9737	+	283	116878341	-	Pcar_0006	-	hypothetical protein
7	 56.79	0	9750..10751	+	333	77917625	gpsA	Pcar_0007	-	glycerol-3-phosphate dehydrogenase (NAD+ dependent)
8	 58.10	0	10781..11515	+	244	77917626	-	Pcar_0008	-	hypothetical protein
9	 56.37	0	11641..12291	+	216	77917627	nth	Pcar_0009	-	endonuclease III
10	 55.51	0	12298..14691	-	797	77917628	mrcA	Pcar_0010	-	peptidoglycan synthetase; penicillin-binding protein 1A
11	 51.63	0	14739..14891	-	50	116878342	-	Pcar_3150	-	hypothetical protein
12	 41.84	-2	15142..15282	+	46	116878343	-	Pcar_3151	-	hypothetical protein
13	 54.48	0	15279..16583	+	434	77917629	-	Pcar_0011	-	aminotransferase
14	 52.85	0	16626..17624	+	332	77917630	-	Pcar_0012	-	hypothetical protein
15	 53.82	0	17775..18023	+	82	77917631	-	Pcar_0013	-	hypothetical protein
16	 58.27	0	18007..18375	+	122	77917632	-	Pcar_0014	-	hypothetical protein
17	 52.77	0	18392..19096	+	234	77917633	atpB-1	Pcar_0015	-	ATP synthase F0, A subunit
18	 55.43	0	19198..19464	+	88	77917634	-	Pcar_0016	-	ATP synthase F0, C subunit
19	 53.37	0	19795..20313	+	172	77917635	-	Pcar_0017	-	hypothetical protein
20	 58.96	0	20318..20797	+	159	77917636	-	Pcar_0018	-	hypothetical protein
21	 61.82	+1	20829..22271	+	480	77917637	-	Pcar_0019	-	hypothetical protein
22	 60.51	+1	22285..23178	+	297	77917638	-	Pcar_0020	-	nucleoside-diphosphate-sugar epimerases
23	 59.72	0	23129..23560	-	143	77917639	-	Pcar_0021	-	NifU-like protein
24	 57.14	0	23705..24145	-	146	77917640	-	Pcar_0022	-	hypothetical protein
25	 61.42	+1	24332..26887	+	851	77917641	-	Pcar_0023	-	Rad3-related DNA helicases
26	 57.28	0	26990..27937	+	315	77917642	rfaD	Pcar_0024	-	ADP-L-glycero-D-mannoheptose-6-epimerase
27	 61.88	+1	28037..28621	+	194	77917643	tehB	Pcar_0025	-	tellurite resistance protein
28	 61.31	+1	28624..29388	+	254	77917644	-	Pcar_0026	-	hypothetical protein
29	 59.15	0	29512..31854	+	780	77917645	lon	Pcar_0027	-	ATP-dependent protease La
30	 62.12	+1	31851..32840	+	329	77917646	thiL	Pcar_0028	-	thiamine-monophosphate kinase
31	 58.29	0	33013..34290	+	425	77917647	-	Pcar_0029	-	putative methyl-accepting chemotaxis protein (MCP)
32	 60.32	0	34290..34730	+	146	77917648	-	Pcar_0030	-	chemotaxis signal transduction protein
33	 59.70	0	34694..36517	+	607	77917649	-	Pcar_0031	-	chemotaxis protein histidine kinase, CheA-like
34	 61.20	+1	36529..37260	+	243	77917650	-	Pcar_0032	-	putative outer membrane lipoprotein-sorting protein
35	 50.41	0	37412..37897	+	161	77917651	-	Pcar_0033	-	nucleotide-binding protein
36	 57.60	0	37919..39286	+	455	77917652	-	Pcar_0034	-	2-methylthioadenine synthetase
37	 63.65	+1	39331..40326	+	331	77917653	-	Pcar_0035	-	hypothetical protein
38	 61.94	+1	40323..40703	+	126	77917654	-	Pcar_0036	-	hypothetical protein
39	 61.59	+1	40684..41274	+	196	77917655	-	Pcar_0037	-	hypothetical protein
40	 60.43	+1	41413..43143	+	576	77917656	-	Pcar_0038	-	ABC-type transport system, ATPase and permease components
41	 62.03	+1	43152..44918	+	588	77917657	mdlB	Pcar_0039	-	putative ATP-binding component of a transport system
42	 58.89	0	44973..45692	-	239	77917658	-	Pcar_0040	-	response regulator
43	 60.98	+1	45910..47316	-	468	77917659	panF	Pcar_0041	-	sodium/pantothenate symporter
44	 60.20	0	47595..49217	+	540	77917660	-	Pcar_0042	-	hypothetical protein
45	 63.49	+1	49210..50154	+	314	77917661	-	Pcar_0043	-	hypothetical protein
46	 60.81	+1	50024..51082	-	352	77917662	-	Pcar_0044	-	glycosyltransferase
47	 61.77	+1	51111..52847	-	578	77917663	-	Pcar_0045	-	hypothetical protein
48	 62.45	+1	53028..56228	-	1066	77917664	-	Pcar_0046	-	putative serine protease
49	 58.11	0	56482..56820	+	112	77917665	arsR	Pcar_0047	-	transcriptional repressor of chromosomal ars operon
50	 54.87	0	56904..58310	+	468	77917666	glpC	Pcar_0048	-	sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit
51	 57.53	0	58370..59431	+	353	77917667	-	Pcar_0049	-	permease
52	 60.38	+1	59568..60791	-	407	77917668	-	Pcar_0050	-	cysteine desulfurase
53	 55.91	0	60788..61633	-	281	77917669	nifU	Pcar_0051	-	Fe-S cluster assembly protein NifU
54	 61.38	+1	61907..63457	-	516	77917670	-	Pcar_0052	-	putative methyl-accepting chemotaxis protein (MCP)
55	 57.10	0	63872..66475	-	867	77917671	-	Pcar_0053	-	two component sensor histidine kinase
56	 54.17	0	66608..67423	-	271	77917672	otsB	Pcar_0054	-	trehalose-phosphatase
57	 53.57	0	67767..68369	+	200	77917673	-	Pcar_0055	-	hypothetical protein
58	 49.72	0	68688..69395	+	235	77917674	-	Pcar_0056	-	response regulator
59	 62.54	+1	69782..71719	+	645	77917675	cooS1	Pcar_0057	-	carbon-monoxide dehydrogenase, catalytic subunit
60	 61.97	+1	71707..72579	+	290	77917676	-	Pcar_0058	-	CO dehydrogenase maturation factor
61	 60.97	+1	72576..73172	+	198	77917677	-	Pcar_0059	-	Fe-S-cluster-containing hydrogenase components 1
62	 60.44	+1	73169..74404	+	411	77917678	-	Pcar_0060	-	NAD(P)H-nitrite reductase
63	 64.24	+1	74465..75370	+	301	77917679	-	Pcar_0061	-	ABC-type transport system, permease component
64	 61.12	+1	75572..77734	+	720	77917680	-	Pcar_0062	-	putative potassium/proton antiporter
65	 58.62	0	77777..77950	-	57	116878344	-	Pcar_3152	-	hypothetical protein
66	 58.10	0	77973..78182	-	69	116878345	-	Pcar_3153	-	hypothetical protein
67	 62.67	+1	78292..79017	+	241	77917681	-	Pcar_0063	-	hypothetical protein
68	 60.51	+1	79282..81654	-	790	77917682	-	Pcar_0064	-	collagenase-like protease
69	 62.28	+1	81876..82559	-	227	77917683	radC	Pcar_0065	-	DNA repair protein RadC
70	 59.49	0	82706..83638	+	310	77917684	-	Pcar_0066	-	alpha-beta hydrolase family esterase
71	 59.11	0	83660..84109	-	149	77917685	-	Pcar_0067	-	putative inosine monophosphate dehydrogenase
72	 57.78	0	84350..85069	+	239	77917686	-	Pcar_0068	-	hypothetical protein
73	 64.11	+1	85203..86336	-	377	77917687	-	Pcar_0069	-	NADH:flavin oxidoreductase
74	 53.07	0	86368..86676	-	102	77917688	-	Pcar_0070	-	hypothetical protein
75	 59.84	0	86795..87673	+	292	77917689	-	Pcar_0071	-	putative transcriptional regulator LysR-type
76	 49.71	0	87863..88540	-	225	77917690	-	Pcar_0072	-	outer membrane immunogenic protein
77	 53.27	0	88700..89908	-	402	77917691	-	Pcar_0073	-	hypothetical protein
78	 56.71	0	90009..90239	-	76	116878346	-	Pcar_3154	-	hypothetical protein
79	 49.20	-1	90421..90918	+	165	77917692	-	Pcar_0074	-	hypothetical protein
80	 57.22	0	91338..91877	-	179	77917693	-	Pcar_0075	-	hypothetical protein
81	 53.88	0	92090..93340	+	416	77917694	-	Pcar_0076	-	transposase
82	 61.31	+1	93789..94217	+	142	77917695	-	Pcar_0077	-	hypothetical protein
83	 60.18	0	94317..94886	-	189	77917696	-	Pcar_0078	-	flavoredoxin
84	 57.14	0	95098..95286	-	62	77917697	-	Pcar_0079	-	putative 4-oxalocrotonate tautomerase
85	 59.49	0	95371..96345	-	324	77917698	-	Pcar_0080	-	SAM-dependent methyltransferase
86	 53.66	0	96342..97079	-	245	77917699	-	Pcar_0081	-	SAM-dependent methyltransferase
87	 59.55	0	97244..97777	+	177	77917700	-	Pcar_0082	-	hypothetical protein
88	 56.16	0	97901..98233	-	110	77917701	-	Pcar_0083	-	hypothetical protein
89	 56.67	0	98336..98845	-	169	77917702	-	Pcar_0084	-	rubrerythrin
90	 51.29	0	99016..99672	-	218	77917703	-	Pcar_0085	-	K+ transport systems, NAD-binding component
91	 58.52	0	99713..101086	-	457	77917704	trkH	Pcar_0086	-	TrkH family potassium uptake protein
92	 59.81	0	101160..103973	-	937	77917705	uvrA	Pcar_0087	-	excinuclease ABC, A subunit
93	 63.38	+1	104081..105085	-	334	77917706	pdxA	Pcar_0088	-	4-hydroxythreonine-4-phosphate dehydrogenase
94	 57.20	0	105318..106268	-	316	77917707	-	Pcar_0089	-	parvulin-like peptidyl-prolyl isomerase
95	 59.42	0	106325..107248	-	307	77917708	-	Pcar_0090	-	parvulin-like peptidyl-prolyl isomerase
96	 62.79	+1	107317..110802	-	1161	77917709	mfd	Pcar_0091	-	transcription-repair coupling factor
97	 57.81	0	110871..111785	-	304	77917710	-	Pcar_0092	-	quinolinate synthetase
98	 60.37	+1	111964..112233	+	89	77917711	tatB	Pcar_0093	-	Sec-independent protein secretion pathway components
99	 57.77	0	112226..112978	+	250	77917712	tatC	Pcar_0094	-	Sec-independent protein translocase TatC
100	 58.29	0	112975..114585	+	536	77917713	-	Pcar_0095	-	putative sensory transduction system, regulatory protein
55.00	MEAN

5.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.