IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.10	0	1..1575	+	524	19551251	dnaA	NCgl0001	-	chromosomal replication initiation protein
2	 56.88	0	2292..3476	+	394	19551252	-	NCgl0002	-	DNA polymerase III subunit beta
3	 55.70	0	3585..4769	+	394	19551253	recF	NCgl0003	-	recombination protein F
4	 55.12	0	4766..5302	+	178	19551254	-	NCgl0004	-	hypothetical protein
5	 55.91	0	5435..7489	+	684	19551255	gyrB	NCgl0005	-	DNA gyrase subunit B
6	 51.08	0	7830..8798	+	322	19551256	-	NCgl0006	-	hypothetical protein
7	 48.68	-1	8795..9400	-	201	19551257	-	NCgl0007	-	hypothetical protein
8	 55.18	0	9471..9914	-	147	19551258	-	NCgl0008	-	hypothetical protein
9	 58.66	+1	10104..11177	-	357	23308766	-	NCgl0009	-	transcriptional regulator
10	 54.55	0	11260..11523	-	87	19551260	-	NCgl0010	-	hypothetical protein
11	 59.04	+1	11520..11768	-	82	19551261	-	NCgl0011	-	hypothetical protein
12	 59.43	+1	11831..14401	+	856	19551262	-	NCgl0012	-	DNA gyrase subunit A
13	 51.88	0	14405..14749	+	114	19551263	-	NCgl0013	-	hypothetical protein
14	 51.46	0	15206..16132	-	308	19551264	-	NCgl0014	-	uncharacterized membrane protein
15	 52.06	0	16314..17210	+	298	19551265	-	NCgl0015	-	transcriptional regulator
16	 49.52	-1	17260..17673	+	137	19551266	-	NCgl0016	-	hypothetical protein
17	 52.92	0	17857..18729	-	290	19551267	-	NCgl0017	-	cytochrome C biogenesis protein
18	 53.99	0	18733..19497	-	254	19551268	-	NCgl0018	-	protein-disulfide isomerase
19	 54.30	0	19705..20076	+	123	19551269	-	NCgl0019	-	transcriptional regulator
20	 55.02	0	20073..21068	+	331	19551270	-	NCgl0020	-	Zn-dependent protease with chaperone function
21	 50.09	-1	21597..22127	+	176	19551272	-	NCgl0021	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
22	 53.43	0	22164..23402	+	412	19551273	-	NCgl0022	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
23	 56.39	0	24295..24732	+	145	23308767	-	NCgl0023	-	stress-induced protein
24	 45.27	-2	24882..26573	-	563	19551275	-	NCgl0024	-	transcriptional regulator
25	 58.63	+1	26819..28099	-	426	19551276	-	NCgl0025	-	hypothetical protein
26	 51.52	0	28161..29117	-	318	19551277	-	NCgl0026	-	ABC-type transporter, periplasmic component
27	 51.17	0	29114..29965	-	283	19551278	-	NCgl0027	-	ABC-type transporter, permease component
28	 54.39	0	29995..30654	+	219	19551279	-	NCgl0028	-	ABC-type transporter, ATPase component
29	 54.37	0	30697..31680	+	327	23308768	-	NCgl0029	-	ABC-type transporter, periplasmic component
30	 53.90	0	31677..32702	+	341	19551281	-	NCgl0030	-	ABC-type transporter, permease component
31	 58.66	+1	32699..33460	+	253	19551282	-	NCgl0031	-	ABC-type transporter, ATPase component
32	 55.97	0	33462..34274	-	270	19551283	-	NCgl0032	-	hypothetical protein
33	 57.24	0	34330..34902	+	190	19551284	-	NCgl0033	-	peptidyl-prolyl cis-trans isomerase (rotamase)
34	 49.42	-1	34982..35671	+	229	19551285	-	NCgl0034	-	uncharacterized membrane protein
35	 50.35	-1	36244..37242	-	332	19551286	-	NCgl0035	-	AraC-type DNA-binding domain-containing protein
36	 54.75	0	37245..38201	+	318	19551287	-	NCgl0036	-	ABC-type transporter, permease component
37	 56.41	0	38202..38981	+	259	19551288	-	NCgl0037	-	ABC-type transporter, ATPase component
38	 53.58	0	38978..39802	+	274	19551289	-	NCgl0038	-	siderophore-interacting protein
39	 51.65	0	40186..40458	-	90	19551290	-	NCgl0039	-	putative septation inhibitor protein
40	 58.94	+1	40573..42513	-	646	19551291	-	NCgl0040	-	serine/threonine protein kinase
41	 55.67	0	42510..43919	-	469	19551292	-	NCgl0041	-	serine/threonine protein kinase
42	 55.86	0	43923..45347	-	474	19551293	-	NCgl0042	-	cell division protein FtsI
43	 55.13	0	45344..46669	-	441	19551294	-	NCgl0043	-	cell division membrane protein
44	 54.87	0	46666..48021	-	451	19551295	-	NCgl0044	-	protein serine/threonine phosphatase
45	 58.28	+1	48021..48485	-	154	19551296	-	NCgl0045	-	FHA-domain-containing protein
46	 51.67	0	48502..49368	-	288	19551297	-	NCgl0046	-	hypothetical protein
47	 49.79	-1	49894..50616	-	240	19551298	-	NCgl0047	-	hypothetical protein
48	 45.36	-2	50963..51436	-	157	19551299	-	NCgl0048	-	hypothetical protein
49	 57.64	0	51623..53095	-	490	19551300	-	NCgl0049	-	NAD-dependent aldehyde dehydrogenase
50	 55.80	0	53055..54011	+	318	23308769	-	NCgl0050	-	phenol 2-monooxygenase
51	 52.74	0	54179..55549	+	456	19551302	-	NCgl0051	-	Zn-dependent hydrolase
52	 60.51	+1	55626..56372	-	248	19551303	-	NCgl0052	-	hypothetical protein
53	 48.64	-1	56383..56676	-	97	19551304	-	NCgl0053	-	rhodanese-related sulfurtransferase
54	 49.83	-1	56677..57270	-	197	19551305	-	NCgl0054	-	rhodanese-related sulfurtransferase
55	 52.33	0	57397..57654	+	85	19551306	-	NCgl0055	-	hypothetical protein
56	 49.42	-1	58087..58944	+	285	19551307	-	NCgl0056	-	hypothetical protein
57	 52.55	0	59091..59933	+	280	19551308	-	NCgl0057	-	hypothetical protein
58	 54.20	0	59952..60665	+	237	19551309	-	NCgl0058	-	hypothetical protein
59	 54.11	0	60669..62324	+	551	23308770	-	NCgl0059	-	hypothetical protein
60	 56.51	0	62387..63508	-	373	19551311	-	NCgl0060	-	Mg2+ and Co2+ transporter protein
61	 49.33	-1	63591..64040	-	149	19551312	-	NCgl0061	-	4-oxalocrotonate tautomerase-like protein
62	 58.58	+1	64163..65461	+	432	19551313	-	NCgl0062	-	chloride channel EriC-like protein
63	 55.56	0	65505..66197	-	230	19551314	-	NCgl0063	-	nicotinamide mononucleotide transporter
64	 56.64	0	66599..67975	+	458	19551315	-	NCgl0064	-	ATPase related to phosphate starvation-inducible protein PhoH
65	 53.23	0	68248..68634	-	128	19551316	-	NCgl0065	-	hypothetical protein
66	 60.14	+1	68717..70186	-	489	23308771	-	NCgl0066	-	H+/citrate symporter
67	 53.99	0	70506..72161	+	551	19551318	-	NCgl0067	-	two-component system sensory transduction histidine kinase
68	 55.56	0	72161..72817	+	218	19551319	-	NCgl0068	-	two-component system response regulator
69	 51.69	0	72814..73728	-	304	19551320	-	NCgl0069	-	phosphoglycerate dehydrogenase or related dehydrogenase
70	 50.69	0	73844..74275	+	143	19551321	-	NCgl0070	-	hypothetical protein
71	 54.63	0	74490..75494	+	334	19551322	-	NCgl0071	-	biotin synthase
72	 57.92	0	75506..75745	+	79	23308772	-	NCgl0072	-	hypothetical protein
73	 57.89	0	75697..76038	+	113	23308773	-	NCgl0073	-	hypothetical protein
74	 52.89	0	82117..83568	-	483	19551324	-	NCgl0074	-	permease
75	 53.12	0	83688..84935	-	415	19551325	-	NCgl0075	-	cytosine deaminase or related metal-dependent hydrolase
76	 54.05	0	85095..85403	-	102	19551326	-	NCgl0076	-	hypothetical protein
77	 57.75	0	85660..86220	-	186	19551328	-	NCgl0077	-	hypothetical protein
78	 57.31	0	86657..87244	+	195	19551329	-	NCgl0078	-	Sir2 family NAD-dependent protein deacetylase
79	 54.36	0	87558..88532	-	324	19551330	-	NCgl0079	-	acetyltransferase or hydrolase
80	 56.81	0	88542..89444	-	300	19551331	-	NCgl0080	-	acetyltransferase or hydrolase
81	 53.00	0	89615..90448	+	277	19551332	-	NCgl0081	-	hypothetical protein
82	 48.26	-1	90458..90973	-	171	19551333	-	NCgl0082	-	mar family transcriptional regulator
83	 52.81	0	91174..91476	+	100	19551334	ureA	NCgl0083	-	urease subunit gamma
84	 55.21	0	91503..91991	+	162	19551335	ureB	NCgl0084	-	urease subunit beta
85	 52.66	0	91992..93704	+	570	19551336	ureC	NCgl0085	-	urease subunit alpha
86	 50.42	-1	93729..94202	+	157	19551337	ureE	NCgl0086	-	urease accessory protein UreE
87	 51.54	0	94202..94882	+	226	19551338	-	NCgl0087	-	urease accessory protein UreF
88	 49.84	-1	94899..95516	+	205	19551339	-	NCgl0088	-	Ni2+-binding GTPase
89	 55.52	0	95517..96368	+	283	19551340	-	NCgl0089	-	urease accessory protein UreH
90	 52.31	0	96365..97144	-	259	19551341	-	NCgl0090	-	hydrolase or acyltransferase
91	 57.84	0	97316..98470	-	384	19551342	-	NCgl0091	-	permease
92	 54.64	0	98805..101582	-	925	19551343	-	NCgl0092	-	hypothetical protein
93	 54.95	0	101609..103435	-	608	19551344	-	NCgl0093	-	HSP90 family molecular chaperone
94	 56.03	0	103503..104912	+	469	19551345	-	NCgl0094	-	AMP nucleosidase
95	 57.22	0	105170..105751	-	193	19551346	-	NCgl0095	-	hypothetical protein
96	 58.92	+1	105838..106392	-	184	23308774	-	NCgl0096	-	thiamine pyrophosphate-requiring enzyme
97	 51.45	0	106627..107178	-	183	19551348	-	NCgl0097	-	hypothetical protein
98	 58.28	+1	107435..110893	+	1152	19551349	-	NCgl0098	-	proline dehydrogenase
99	 54.11	0	111374..112321	+	315	19551350	-	NCgl0099	-	oxidoreductase
100	 51.39	0	112470..114086	+	538	19551351	-	NCgl0100	-	putative p-aminobenzoyl-glutamate transporter
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.