IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.31	0	1..801	+	266	27366464	-	VV2_0001	-	ABC-type proline/glycine betaine transport system, permease component
2	 47.99	0	804..1997	+	397	27366465	-	VV2_0002	-	ABC-type proline/glycine betaine transport system, ATPase component
3	 42.58	-1	2080..2544	-	154	27366466	-	VV2_0003	-	hypothetical protein
4	 45.89	0	2910..4112	+	400	27366467	-	VV2_0004	-	transposase
5	 50.69	0	4163..6553	-	796	27366468	-	VV2_0005	-	phosphoenolpyruvate synthase
6	 46.64	0	6709..7542	+	277	27366469	-	VV2_0006	-	hypothetical protein
7	 49.51	0	7587..8600	+	337	27366470	-	VV2_0007	-	hypothetical protein
8	 47.48	0	8667..9896	-	409	27366471	-	VV2_0008	-	regulatory P domain-containing protein
9	 35.52	-2	9944..10582	-	212	27366472	-	VV2_0009	-	hypothetical protein
10	 49.76	0	11013..12656	+	547	27366473	glpA	VV2_0010	-	sn-glycerol-3-phosphate dehydrogenase subunit A
11	 50.11	0	12650..13966	+	438	27366474	-	VV2_0011	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
12	 45.34	0	13963..15186	+	407	27366475	glpC	VV2_0012	-	sn-glycerol-3-phosphate dehydrogenase subunit C
13	 46.73	0	15294..15905	-	203	27366476	-	VV2_0013	-	phosphatase
14	 50.42	0	16008..17084	+	358	27366477	-	VV2_0014	-	threonine aldolase
15	 49.34	0	17071..18126	+	351	27366478	-	VV2_0015	-	hypothetical protein
16	 49.58	0	18130..19212	-	360	27366479	-	VV2_0016	-	glucose/sorbosone dehydrogenase
17	 45.27	0	19347..19949	+	200	27366480	-	VV2_0018	-	hypothetical protein
18	 49.78	0	20024..21136	-	370	27366481	-	VV2_0019	-	alcohol dehydrogenase, class IV
19	 50.48	0	21518..22870	+	450	161501868	-	VV2_0020	-	putative chaperone
20	 46.49	0	22956..23069	+	37	27366483	-	VV2_0021	-	hypothetical protein
21	 49.82	0	23123..23401	-	92	27366484	-	VV2_0022	-	rhodanese-related sulfurtransferase
22	 49.04	0	23694..24731	+	345	27366485	-	VV2_0023	-	hypothetical protein
23	 46.08	0	24835..25038	+	67	27366486	-	VV2_0024	-	hypothetical protein
24	 45.64	0	25062..26012	+	316	27366487	-	VV2_0025	-	transcriptional regulator
25	 44.58	0	26009..26515	+	168	27366488	-	VV2_0026	-	hypothetical protein
26	 52.92	+1	26705..27817	+	370	27366489	-	VV2_0027	-	membrane-fusion protein
27	 49.17	0	27817..28119	+	100	27366490	-	VV2_0028	-	cation/multidrug efflux pump
28	 51.81	+1	27971..29686	+	571	27366491	-	VV2_0029	-	cation/multidrug efflux pump
29	 49.74	0	29718..30869	+	383	27366492	-	VV2_0030	-	cation/multidrug efflux pump
30	 51.73	+1	31025..32296	+	423	27366493	-	VV2_0031	-	hypothetical protein
31	 50.00	0	32360..34147	-	595	27366494	-	VV2_0032	-	Zinc metalloprotease
32	 48.35	0	34626..35657	+	343	27366495	-	VV2_0033	-	Signal recognition particle GTPase
33	 47.73	0	35864..36238	+	124	27366496	-	VV2_0034	-	protein chain release factor A
34	 46.72	0	36392..36772	-	126	27366497	-	VV2_0035	-	hypothetical protein
35	 48.68	0	37183..38355	-	390	27366498	-	VV2_0037	-	amino acid permease
36	 47.74	0	38796..39371	+	191	27366499	-	VV2_0038	-	diadenosine tetraphosphatase
37	 46.89	0	39609..39962	+	117	27366500	-	VV2_0040	-	permease
38	 46.84	0	39995..40342	+	115	27366501	-	VV2_0041	-	permease
39	 48.43	0	40537..42444	+	635	27366502	-	VV2_0042	-	methyl-accepting chemotaxis protein
40	 47.50	0	42507..44186	+	559	27366503	-	VV2_0043	-	glutamate decarboxylase
41	 51.03	0	44286..45743	-	485	27366504	-	VV2_0044	-	N-acetylglucosamine-binding protein A
42	 45.78	0	46250..47149	+	299	27366505	-	VV2_0045	-	permease
43	 49.74	0	47205..47789	-	194	27366506	-	VV2_0046	-	hypothetical protein
44	 43.87	-1	47954..48304	+	116	27366507	-	VV2_0047	-	hypothetical protein
45	 50.83	0	48597..49202	+	201	27366508	-	VV2_0048	-	membrane-associated phospholipid phosphatase
46	 50.55	0	49314..50312	-	332	27366509	-	VV2_0049	-	deacylase
47	 50.49	0	50469..52001	-	510	27366510	-	VV2_0050	-	hypothetical protein
48	 46.69	0	52239..53720	+	493	27366511	-	VV2_0051	-	NAD-dependent aldehyde dehydrogenase
49	 49.22	0	53679..53999	-	106	27366512	-	VV2_0052	-	cytochrome c553
50	 48.51	0	54072..55079	-	335	27366513	-	VV2_0053	-	threonine aldolase
51	 46.32	0	55098..55613	-	171	27366514	-	VV2_0054	-	NTP pyrophosphohydrolase
52	 46.28	0	55889..57556	+	555	27366515	-	VV2_0055	-	MoxR-like ATPase
53	 46.61	0	57566..59011	+	481	27366516	yieM	VV2_0056	-	hypothetical protein
54	 45.80	0	59137..59481	+	114	27366517	-	VV2_0057	-	hypothetical protein
55	 46.80	0	59518..59955	+	145	27366518	-	VV2_0058	-	hypothetical protein
56	 47.19	0	59988..60485	-	165	27366519	-	VV2_0059	-	putative threonine efflux protein
57	 49.05	0	60892..61311	+	139	27366520	-	VV2_0061	-	D-ribose pyranase
58	 46.55	0	61355..62860	+	501	27366521	-	VV2_0062	-	D-ribose transporter ATP binding protein
59	 49.85	0	62857..63843	+	328	27366522	rbsC	VV2_0063	-	ribose ABC transporter permease protein
60	 50.17	0	63919..64797	+	292	27366523	-	VV2_0064	-	D-ribose transporter subunit RbsB
61	 48.53	0	64953..65873	+	306	27366524	-	VV2_0065	-	ribokinase
62	 45.88	0	65894..66913	+	339	27366525	-	VV2_0066	-	transcriptional regulator
63	 39.81	-2	67144..67359	+	71	27366526	-	VV2_0067	-	hypothetical protein
64	 45.53	0	67792..68775	+	327	27366527	-	VV2_0068	-	FOG: CheY-like receiver
65	 45.30	0	68862..69914	-	350	27366528	-	VV2_0069	-	Fatty-acid desaturase
66	 47.54	0	70156..70704	+	182	27366529	-	VV2_0070	-	histone acetyltransferase HPA2
67	 47.41	0	70797..71741	-	314	27366530	rbgA	VV2_0071	-	ribosomal biogenesis GTPase
68	 49.04	0	72002..73561	-	519	27366531	-	VV2_0072	-	methyl-accepting chemotaxis protein
69	 43.11	-1	73768..74688	+	306	27366532	-	VV2_0073	-	anti-anti-sigma regulatory factor
70	 46.89	0	74691..75044	+	117	27366533	-	VV2_0074	-	anti-anti-sigma regulatory factor
71	 48.66	0	75070..75480	+	136	27366534	-	VV2_0075	-	anti-sigma regulatory factor
72	 45.13	0	75483..76067	+	194	27366535	-	VV2_0076	-	Serine phosphatase RsbU, regulator of sigma subunit
73	 46.51	0	76060..79278	+	1072	27366536	-	VV2_0077	-	FOG: CheY-like receiver
74	 46.79	0	79262..80398	+	378	27366537	-	VV2_0078	-	response regulator
75	 47.27	0	80545..81678	+	377	27366538	-	VV2_0079	-	DNA repair exonuclease
76	 48.08	0	81687..84752	+	1021	27366539	-	VV2_0080	-	ATPase involved in DNA repair
77	 45.57	0	85287..89036	+	1249	27366540	-	VV2_0082	-	hypothetical protein
78	 39.23	-2	89575..90405	+	276	27366541	-	VV2_0083	-	transcriptional regulator
79	 40.55	-2	91049..91339	+	96	27366542	-	VV2_0084	-	Flp pilus assembly protein
80	 37.97	-2	91465..92175	+	236	27366543	-	VV2_0085	-	hypothetical protein
81	 43.40	-1	92193..93503	+	436	27366544	-	VV2_0086	-	Flp pilus assembly protein
82	 40.10	-2	93581..93964	+	127	27366545	-	VV2_0087	-	ATPase with chaperone activity
83	 42.06	-1	93964..95166	+	400	27366546	-	VV2_0088	-	ATPase involved in chromosome partitioning
84	 47.16	0	95163..96428	+	421	27366547	-	VV2_0089	-	Flp pilus assembly protein
85	 40.87	-2	96428..97342	+	304	27366548	-	VV2_0090	-	Flp pilus assembly protein TadB
86	 39.66	-2	97807..98217	+	136	27366549	-	VV2_0091	-	Flp pilus assembly protein TadC
87	 42.97	-1	98249..99358	+	369	27366550	-	VV2_0092	-	Flp pilus assembly protein TadD
88	 41.48	-1	99355..99882	+	175	27366551	-	VV2_0093	-	hypothetical protein
89	 43.30	-1	99872..100453	+	193	27366552	-	VV2_0094	-	hypothetical protein
90	 43.79	-1	100455..101735	+	426	27366553	-	VV2_0095	-	Flp pilus assembly protein TadG
91	 44.27	-1	101737..102303	+	188	27366554	-	VV2_0096	-	Outer membrane protein
92	 44.36	0	102542..102922	-	126	27366555	-	VV2_0097	-	pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component
93	 45.95	0	103087..104013	+	308	27366556	-	VV2_0099	-	hypothetical protein
94	 40.78	-2	104618..104872	+	84	27366557	-	VV2_0100	-	hypothetical protein
95	 44.99	0	104938..105735	-	265	27366558	-	VV2_0101	-	lipase
96	 50.21	0	105844..107247	-	467	27366559	-	VV2_0102	-	di- and tricarboxylate transporter
97	 47.56	0	107525..109084	+	519	27366560	-	VV2_0103	-	Signal transduction histidine kinase regulating citrate/malate metabolism
98	 48.89	0	109087..109761	+	224	27366561	-	VV2_0104	-	response regulator of citrate/malate metabolism
99	 46.30	0	109922..110515	+	197	27366562	-	VV2_0105	-	acetyltransferase
100	 44.96	0	110576..111031	-	151	27366563	-	VV2_0106	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.