IslandPath Analysis: Nitrosospira multiformis ATCC 25196



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.24   STD DEV: 3.57
Nitrosospira multiformis ATCC 25196 chromosome 1, complete sequence - 1..3184243
2757 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.41	0	69..1499	+	476	82701136	-	Nmul_A0001	-	chromosomal replication initiator protein DnaA
2	 48.29	-1	1719..2828	+	369	82701137	-	Nmul_A0002	-	DNA polymerase III, beta subunit
3	 53.93	0	3157..5589	+	810	82701138	gyrB	Nmul_A0003	-	DNA gyrase subunit B
4	 57.39	0	5730..6980	+	416	82701139	-	Nmul_A0004	-	serine hydroxymethyltransferase
5	 55.42	0	7110..7589	+	159	82701140	-	Nmul_A0005	-	transcriptional regulator NrdR
6	 60.58	+1	7704..8804	+	366	82701141	-	Nmul_A0006	-	riboflavin biosynthesis protein RibD
7	 57.80	0	8891..9454	-	187	82701142	-	Nmul_A0007	-	two component Fis family transcriptional regulator
8	 55.61	0	9451..10716	-	421	82701143	-	Nmul_A0008	-	periplasmic sensor signal transduction histidine kinase
9	 53.43	0	10912..11538	+	208	82701144	-	Nmul_A0009	-	riboflavin synthase subunit alpha
10	 58.99	+1	11535..12668	+	377	82701145	-	Nmul_A0010	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
11	 55.90	0	12785..13267	+	160	82701146	ribH	Nmul_A0011	-	riboflavin synthase subunit beta
12	 57.65	0	13378..13854	+	158	82701147	-	Nmul_A0012	-	NusB antitermination factor
13	 55.75	0	13916..14941	+	341	82701148	-	Nmul_A0013	-	thiamine-monophosphate kinase
14	 57.03	0	14922..15554	+	210	82701149	-	Nmul_A0014	-	phosphatidylglycerophosphatase A
15	 59.02	+1	15630..16139	+	169	82701150	-	Nmul_A0015	-	CinA-like
16	 51.54	0	16151..16798	-	215	82701151	-	Nmul_A0016	-	hypothetical protein
17	 57.92	+1	16951..18174	+	407	82701152	-	Nmul_A0017	-	tetratricopeptide TPR_3
18	 54.17	0	18171..18386	+	71	82701153	-	Nmul_A0018	-	hypothetical protein
19	 58.33	+1	18529..19548	+	339	82701154	recA	Nmul_A0019	-	recombinase A
20	 59.16	+1	19616..20068	+	150	82701155	-	Nmul_A0020	-	regulatory protein RecX
21	 50.55	-1	20065..20517	+	150	82701156	-	Nmul_A0021	-	hypothetical protein
22	 57.90	+1	20524..23112	+	862	82701157	-	Nmul_A0022	-	alanyl-tRNA synthetase
23	 54.78	0	23153..24103	+	316	82701158	-	Nmul_A0023	-	thioredoxin reductase
24	 63.84	+2	24258..24893	+	211	82701159	-	Nmul_A0024	-	Smr protein/MutS2-like
25	 55.81	0	24924..25319	-	131	82701160	-	Nmul_A0025	-	TraR/DksA family transcriptional regulator
26	 61.25	+1	26103..27338	-	411	82701161	-	Nmul_A0026	-	major facilitator transporter
27	 51.22	0	28045..28866	+	273	82701162	-	Nmul_A0027	-	hypothetical protein
28	 57.52	0	29878..30336	-	152	82701163	-	Nmul_A0028	-	surface antigen protein
29	 46.85	-2	30389..30721	+	110	82701164	-	Nmul_A0029	-	hypothetical protein
30	 62.60	+2	30847..32124	-	425	82701165	-	Nmul_A0030	-	hypothetical protein
31	 47.50	-1	32159..32398	-	79	82701166	-	Nmul_A0031	-	hypothetical protein
32	 61.73	+2	32528..33013	+	161	82701167	-	Nmul_A0032	-	hypothetical protein
33	 53.02	0	33010..33522	+	170	82701168	-	Nmul_A0033	-	hypothetical protein
34	 57.95	+1	33715..34551	+	278	82701169	-	Nmul_A0034	-	hypothetical protein
35	 51.39	0	34825..35184	+	119	82701170	-	Nmul_A0035	-	hypothetical protein
36	 55.84	0	35230..36420	-	396	82701171	-	Nmul_A0036	-	S-adenosylmethionine synthetase
37	 57.93	+1	36417..39539	-	1040	82701172	-	Nmul_A0037	-	ATPase, E1-E2 type
38	 53.94	0	39950..41914	+	654	82701173	-	Nmul_A0038	-	amine oxidase
39	 57.46	0	41919..43004	-	361	82701174	-	Nmul_A0039	-	hypothetical protein
40	 47.51	-1	43320..43700	-	126	82701175	-	Nmul_A0040	-	glyoxalase/bleomycin resistance protein/dioxygenase
41	 56.48	0	43871..44449	+	192	82701176	-	Nmul_A0041	-	TetR family transcriptional regulator
42	 57.65	0	44617..45792	+	391	82701177	-	Nmul_A0042	-	secretion protein HlyD
43	 56.63	0	45802..48930	+	1042	82701178	-	Nmul_A0043	-	hydrophobe/amphiphile efflux-1 HAE1
44	 51.24	0	49143..49829	-	228	82701179	-	Nmul_A0044	-	hypothetical protein
45	 56.91	0	50064..53867	+	1267	82701180	metH	Nmul_A0045	-	B12-dependent methionine synthase
46	 62.73	+2	53982..54362	+	126	82701181	-	Nmul_A0046	-	IS298, transposase OrfA
47	 59.18	+1	54212..54745	+	177	82701182	-	Nmul_A0047	-	transposase IS4
48	 48.27	-1	54842..55651	+	269	82701183	-	Nmul_A0048	-	hypothetical protein
49	 55.22	0	55669..56367	-	232	82701184	-	Nmul_A0049	-	hypothetical protein
50	 56.38	0	56539..58686	-	715	82701185	-	Nmul_A0050	-	(p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
51	 54.59	0	58820..59026	-	68	82701186	-	Nmul_A0051	-	DNA-directed RNA polymerase, omega subunit
52	 56.24	0	59209..59841	-	210	82701187	-	Nmul_A0052	-	guanylate kinase
53	 57.37	0	60014..60454	-	146	82701188	-	Nmul_A0053	-	thioredoxin
54	 53.68	0	60899..61306	+	135	82701189	-	Nmul_A0054	-	transposase IS3/IS911
55	 53.95	0	61303..62151	+	282	82701190	-	Nmul_A0055	-	integrase catalytic subunit
56	 49.17	-1	62655..63260	-	201	82701191	-	Nmul_A0056	-	hypothetical protein
57	 54.97	0	63303..64268	-	321	82701192	-	Nmul_A0057	-	peptidase S49
58	 50.91	0	64265..65140	-	291	82701193	-	Nmul_A0058	-	hypothetical protein
59	 57.63	0	65529..66923	-	464	82701194	-	Nmul_A0059	-	hypothetical protein
60	 55.63	0	66910..67335	-	141	82701195	-	Nmul_A0060	-	hypothetical protein
61	 53.62	0	67332..67607	-	91	82701196	-	Nmul_A0061	-	hypothetical protein
62	 54.51	0	68549..68803	-	84	82701197	-	Nmul_A0062	-	putative transcriptional regulator
63	 43.91	-2	68916..69539	-	207	82701198	-	Nmul_A0063	-	hypothetical protein
64	 55.03	0	69640..70902	-	420	82701199	-	Nmul_A0064	-	Phage integrase
65	 54.36	0	71155..72048	-	297	82701200	-	Nmul_A0065	-	hypothetical protein
66	 56.35	0	72220..72936	+	238	82701201	-	Nmul_A0066	-	ribonuclease PH
67	 54.04	0	72945..73538	+	197	82701202	-	Nmul_A0067	-	putative deoxyribonucleotide triphosphate pyrophosphatase
68	 54.93	0	73643..74869	+	408	82701203	-	Nmul_A0068	-	coproporphyrinogen III oxidase
69	 57.25	0	74876..75565	-	229	82701204	-	Nmul_A0069	-	hypothetical protein
70	 56.10	0	75617..76411	-	264	82701205	thiG	Nmul_A0070	-	thiazole synthase
71	 51.94	0	76415..76903	-	162	82701206	-	Nmul_A0071	-	thiamine biosynthesis protein ThiS
72	 51.63	0	77017..77475	+	152	82701207	-	Nmul_A0072	-	hypothetical protein
73	 58.09	+1	77708..78220	-	170	82701208	-	Nmul_A0073	-	hypothetical protein
74	 55.95	0	78484..78903	+	139	82701209	-	Nmul_A0074	-	hypothetical protein
75	 47.62	-1	79069..79404	-	111	82701210	-	Nmul_A0075	-	membrane protein, Kef-type K+ transport system NAD-binding component
76	 51.97	0	79526..80437	+	303	82701211	-	Nmul_A0076	-	Ion transport protein
77	 52.93	0	80802..82322	+	506	82701212	-	Nmul_A0077	-	AsmA
78	 56.94	0	82322..83473	+	383	82701213	-	Nmul_A0078	-	A/G-specific adenine glycosylase
79	 55.05	0	83497..84150	+	217	82701214	-	Nmul_A0079	-	5-formyltetrahydrofolate cyclo-ligase
80	 57.70	0	84182..84817	-	211	82701215	-	Nmul_A0080	-	aromatic acid decarboxylase
81	 54.29	0	84905..85744	-	279	82701216	-	Nmul_A0081	-	hypothetical protein
82	 54.50	0	85831..86775	-	314	162139866	-	Nmul_A0082	-	HPr kinase/phosphorylase
83	 52.15	0	86952..87254	-	100	82701218	-	Nmul_A0083	-	sigma 54 modulation protein/ribosomal protein S30EA
84	 55.21	0	87281..88747	-	488	82701219	-	Nmul_A0084	-	sigma-54 (RpoN)
85	 53.41	0	88798..89604	-	268	82701220	-	Nmul_A0085	-	ABC transporter related
86	 52.88	0	89617..90189	-	190	82701221	-	Nmul_A0086	-	OstA-like protein
87	 50.44	-1	90173..90745	-	190	82701222	-	Nmul_A0087	-	hypothetical protein
88	 56.57	0	90742..91266	-	174	82701223	-	Nmul_A0088	-	phosphatase kdsC
89	 55.42	0	91488..92447	-	319	82701224	-	Nmul_A0089	-	hydroxymethylbutenyl pyrophosphate reductase
90	 56.43	0	92720..93715	-	331	82701225	-	Nmul_A0090	-	periplasmic binding protein
91	 55.24	0	93840..94994	-	384	82701226	-	Nmul_A0091	-	3-deoxy-7-phosphoheptulonate synthase
92	 55.35	0	95266..96237	+	323	82701227	-	Nmul_A0092	-	tRNA delta(2)-isopentenylpyrophosphate transferase
93	 55.56	0	96297..96656	+	119	82701228	-	Nmul_A0093	-	transport-associated protein
94	 57.31	0	96722..99061	+	779	82701229	fadE	Nmul_A0094	-	acyl-CoA dehydrogenase
95	 57.48	0	99069..101060	+	663	82701230	-	Nmul_A0095	-	AMP-dependent synthetase and ligase
96	 58.81	+1	101126..101545	+	139	82701231	-	Nmul_A0096	-	thioesterase superfamily protein
97	 56.17	0	101573..104125	+	850	82701232	-	Nmul_A0097	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
98	 59.60	+1	104286..105488	+	400	82701233	-	Nmul_A0098	-	acetyl-CoA acetyltransferase
99	 52.91	0	105585..105773	-	62	82701234	-	Nmul_A0099	-	hypothetical protein
100	 56.17	0	106448..106771	+	107	82701235	-	Nmul_A0100	-	hypothetical protein
54.24	MEAN

3.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.