IslandPath Analysis: Photobacterium profundum SS9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.70   STD DEV: 3.63
Photobacterium profundum SS9 chromosome 2, complete sequence - 1..2237943
2006 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.41	0	469..2475	+	668	54301681	-	PBPRB0001	-	putative translation elongation factors
2	 42.27	0	2805..5087	+	760	54301682	-	PBPRB0002	-	hypothetical protein
3	 45.86	+1	5583..8672	-	1029	54301683	-	PBPRB0003	-	putative tetrathionate reductase, subunit A
4	 45.29	0	8684..9820	-	378	54301684	-	PBPRB0004	-	tetrathionate reductase complex, subunit C
5	 39.31	0	10026..10460	+	144	54301685	-	PBPRB0005	-	transposase
6	 48.13	+1	10515..11183	-	222	54301686	-	PBPRB0006	-	putative tetrathionate reductase, subunit B
7	 42.98	0	11441..13357	+	638	54301687	-	PBPRB0007	-	histidine kinase
8	 40.07	0	13373..13966	+	197	54301688	-	PBPRB0008	-	tetrathionate reductase complex response regulator
9	 43.06	0	14133..14780	+	215	54301689	-	PBPRB0009	-	maltose O-acetyltransferase
10	 40.38	0	14899..15693	-	264	54301690	-	PBPRB0010	-	AraC/XylS family transcription factor
11	 40.28	0	15915..16490	+	191	54301691	-	PBPRB0011	-	hypothetical protein
12	 42.68	0	17264..18151	+	295	54301692	-	PBPRB0012	-	hypothetical protein
13	 47.79	+1	18413..19069	+	218	54301693	-	PBPRB0013	-	putative transposase
14	 52.18	+2	19200..22037	+	945	54301694	-	PBPRB0014	-	acyltransferase family protein
15	 44.26	0	22130..22852	+	240	54301695	-	PBPRB0015	-	putative transposase
16	 44.16	0	23171..23641	-	156	54301696	-	PBPRB0016	-	putative transposase
17	 44.95	0	24090..25724	-	544	54301697	-	PBPRB0017	-	deacylase
18	 46.13	+1	26221..27603	-	460	54301698	-	PBPRB0018	-	putative alpha-galactosidase (melibiase)
19	 48.89	+1	27606..28595	-	329	54301699	-	PBPRB0019	-	putative AraH,ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
20	 48.28	+1	28595..29350	-	251	54301700	-	PBPRB0020	-	sugar ABC transporter ATPase protein
21	 45.96	+1	29350..30363	-	337	54301701	-	PBPRB0021	-	hypothetical protein
22	 45.32	0	30916..31182	+	88	54301702	-	PBPRB0022	-	hypothetical protein
23	 44.68	0	31218..32363	+	381	54301703	-	PBPRB0023	-	transposase
24	 41.27	0	32504..32755	+	83	54301704	-	PBPRB0024	-	hypothetical protein
25	 47.01	+1	33436..34137	+	233	54301705	-	PBPRB0025	-	DNA-binding transcriptional regulator TorR
26	 44.92	0	34174..37281	+	1035	54301706	-	PBPRB0026	-	sensor protein TorS
27	 47.77	+1	37653..38234	+	193	54301707	-	PBPRB0027	-	hypothetical protein
28	 45.23	0	38421..40496	+	691	54301708	-	PBPRB0028	-	methyl-accepting chemotaxisprotein
29	 41.37	0	40752..41087	+	111	54301709	-	PBPRB0029	-	hypothetical protein
30	 44.99	0	41148..42116	+	322	54301710	-	PBPRB0030	-	hypothetical protein
31	 43.20	0	42164..43288	+	374	54301711	-	PBPRB0031	-	transaminase
32	 38.59	0	43331..43996	-	221	54301712	-	PBPRB0032	-	hypothetical protein
33	 47.54	+1	44301..45806	-	501	54301713	-	PBPRB0033	-	hypothetical protein
34	 47.88	+1	46151..49243	-	1030	54301714	lacZ	PBPRB0034	-	beta-D-galactosidase
35	 29.72	-2	49880..50128	+	82	54301715	-	PBPRB0035	-	hypothetical protein
36	 40.00	0	50257..50496	-	79	54301716	-	PBPRB0036	-	putative cold shock-like protein
37	 33.33	-2	50503..50745	-	80	54301717	-	PBPRB0037	-	hypothetical protein
38	 44.59	0	50807..51694	+	295	54301718	-	PBPRB0038	-	hypothetical protein
39	 46.46	+1	51741..52121	-	126	54301719	-	PBPRB0039	-	hypothetical protein
40	 43.81	0	52150..53313	-	387	54301720	-	PBPRB0040	-	hypothetical protein
41	 39.48	0	53598..53906	-	102	54301721	-	PBPRB0041	-	hypothetical protein
42	 36.95	-1	54129..54737	-	202	54301722	-	PBPRB0042	-	transcriptional regulator
43	 40.28	0	54858..56009	+	383	54301723	-	PBPRB0043	-	hypothetical protein
44	 40.33	0	56111..56539	+	142	54301724	-	PBPRB0044	-	hypothetical protein
45	 47.45	+1	56801..57742	-	313	54301725	-	PBPRB0045	-	hypothetical protein
46	 46.84	+1	57895..59382	+	495	54301726	-	PBPRB0046	-	aspartate ammonia-lyase
47	 50.04	+2	59382..60740	+	452	54301727	-	PBPRB0047	-	hypothetical protein
48	 48.12	+1	60766..62070	+	434	54301728	-	PBPRB0048	-	anaerobic C4-dicarboxylate transporter
49	 40.46	0	62274..63494	+	406	54301729	-	PBPRB0049	-	hypothetical protein
50	 42.56	0	63815..65158	+	447	54301730	-	PBPRB0050	-	methylamine utilization protein
51	 45.35	+1	65219..65842	-	207	54301731	-	PBPRB0051	-	hypothetical protein
52	 42.45	0	65854..66270	-	138	54301732	-	PBPRB0052	-	hypothetical protein
53	 42.30	0	66302..66937	-	211	54301733	-	PBPRB0053	-	hypothetical protein
54	 44.74	0	66982..68007	-	341	54301734	-	PBPRB0054	-	putative potassium channel related protein
55	 43.81	0	68059..68745	-	228	54301735	-	PBPRB0055	-	hypothetical protein
56	 38.60	0	68745..69143	-	132	54301736	-	PBPRB0056	-	hypothetical protein
57	 30.12	-2	69234..69482	-	82	54301737	-	PBPRB0057	-	hypothetical protein
58	 47.98	+1	69616..71697	-	693	54301738	-	PBPRB0058	-	transketolase
59	 45.22	0	71705..72655	-	316	54301739	-	PBPRB0059	-	transaldolase B
60	 40.33	0	73110..76025	-	971	54301740	-	PBPRB0060	-	putative BaeS, Signal transduction histidine kinase
61	 43.59	0	76296..77786	-	496	54301741	-	PBPRB0061	-	hypothetical protein
62	 42.19	0	78188..78898	-	236	54301742	-	PBPRB0062	-	purine nucleoside phosphorylase
63	 40.26	0	80266..81636	-	456	54301743	-	PBPRB0063	-	hypothetical protein
64	 39.02	0	81829..82338	+	169	54301744	-	PBPRB0064	-	hypothetical protein
65	 42.27	0	82581..82994	-	137	54301745	-	PBPRB0065	-	hypothetical protein
66	 41.36	0	83354..84661	+	435	54301746	-	PBPRB0066	-	hypothetical protein
67	 39.27	0	84775..85431	-	218	54301747	-	PBPRB0067	-	putative phosphatase/phosphohexomutase
68	 41.95	0	85927..86622	+	231	54301748	-	PBPRB0068	-	putative chloramphenicol acetyltransferase
69	 40.69	0	86671..87879	-	402	54301749	-	PBPRB0069	-	transposase
70	 46.28	+1	88149..90203	-	684	54301750	-	PBPRB0070	-	putative penicillin-binding protein 2
71	 40.00	0	90507..91436	-	309	54301751	-	PBPRB0071	-	hypothetical protein
72	 40.94	0	91541..92434	+	297	54301752	-	PBPRB0072	-	putative transcriptional regulator
73	 37.96	-1	92524..93474	+	316	54301753	-	PBPRB0073	-	hypothetical protein
74	 41.09	0	93922..95172	+	416	54301754	-	PBPRB0074	-	acetate kinase
75	 44.35	0	95429..96526	-	365	54301755	-	PBPRB0075	-	hypothetical protein
76	 45.13	0	97101..98405	-	434	54301756	-	PBPRB0076	-	anaerobic C4-dicarboxylate transporter
77	 40.42	0	99275..100093	-	272	54301757	-	PBPRB0077	-	transcriptional regulator
78	 41.58	0	100104..100709	-	201	54301758	-	PBPRB0078	-	efflux family protein
79	 44.25	0	101163..103799	-	878	54301759	-	PBPRB0079	-	putative biotin sulfoxide reductase (bisC)
80	 39.53	0	104246..104713	-	155	54301760	-	PBPRB0080	-	putative regulatory helix-turn-helix protein
81	 42.97	0	104761..105009	+	82	54301761	-	PBPRB0081	-	hypothetical protein
82	 42.34	0	105107..106072	-	321	54301762	-	PBPRB0082	-	hypothetical protein
83	 36.36	-1	107296..107625	-	109	54301763	-	PBPRB0083	-	hypothetical protein
84	 44.33	0	107635..108198	-	187	54301764	-	PBPRB0084	-	putative transposase
85	 41.40	0	108200..108670	-	156	54301765	-	PBPRB0085	-	putative transposase
86	 33.06	-2	108916..109278	-	120	54301766	-	PBPRB0086	-	hypothetical protein
87	 46.73	+1	109739..110044	+	101	54301767	-	PBPRB0087	-	hypothetical protein
88	 37.18	-1	110124..110513	-	129	54301768	-	PBPRB0088	-	putative universal stress protein A
89	 41.18	0	111285..111947	-	220	54301769	-	PBPRB0089	-	prophage MuSo1, Cro/CI family transcriptional regulator
90	 42.56	0	113365..113700	+	111	54301770	-	PBPRB0090	-	bacteriophage transcriptional regulator
91	 37.82	-1	113961..114473	+	170	54301771	-	PBPRB0091	-	hypothetical protein
92	 39.67	0	114535..114834	-	99	54301772	-	PBPRB0092	-	hypothetical protein
93	 42.72	0	115057..115482	-	141	54301773	-	PBPRB0093	-	hypothetical protein
94	 38.06	-1	115844..117409	+	521	54301774	-	PBPRB0094	-	hypothetical protein
95	 50.94	+2	117478..117744	+	88	54301775	-	PBPRB0095	-	hypothetical protein
96	 39.31	0	117817..118251	+	144	54301776	-	PBPRB0096	-	transposase
97	 51.78	+2	118489..118797	+	102	54301777	-	PBPRB0097	-	hypothetical protein
98	 48.05	+1	118937..119629	+	230	54301778	-	PBPRB0098	-	hypothetical protein
99	 40.28	0	120024..121232	+	402	54301779	-	PBPRB0099	-	ISSod3 transposase
100	 40.76	0	121597..123603	+	668	54301780	-	PBPRB0100	-	methyl-accepting chemotaxis protein
41.70	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.