IslandPath Analysis: Bacteroides fragilis NCTC 9343



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.41   STD DEV: 5.62
Bacteroides fragilis NCTC 9343, complete genome - 1..5205140
4184 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.72	0	67..594	+	175	60679598	-	BF0001	-	putative SpoU rRNA methylase family protein
2	 34.01	-1	749..2218	+	489	60679599	-	BF0002	-	putative outer membrane protein
3	 29.84	-2	2211..3182	+	323	60679600	-	BF0003	-	hypothetical protein
4	 33.81	-1	3196..4035	+	279	60679601	-	BF0004	-	putative sugar transferase
5	 41.01	0	4069..4602	+	177	60679602	-	BF0005	-	hypothetical protein
6	 44.80	0	4663..6468	+	601	60679603	-	BF0006	-	hypothetical protein
7	 34.33	-1	6658..8469	+	603	60679604	-	BF0007	-	hypothetical protein
8	 35.66	-1	8625..9743	+	372	60679605	-	BF0008	-	putative glycosyltransferase
9	 40.51	0	9724..10392	+	222	60679606	-	BF0009	-	putative glycosyltransferase
10	 36.57	-1	10512..11747	+	411	60679607	-	BF0010	-	hypothetical protein
11	 37.87	0	11752..13935	+	727	60679608	-	BF0011	-	putative ABC transporter ATP-binding protein
12	 39.33	0	14052..14651	-	199	60679609	-	BF0012	-	hypothetical protein
13	 39.45	0	14771..16798	+	675	60679610	-	BF0013	-	hypothetical protein
14	 42.76	0	16856..17629	+	257	60679611	-	BF0014	-	putative SAM superfamily protein
15	 39.22	0	17671..18180	+	169	60679612	-	BF0015	-	hypothetical protein
16	 42.87	0	18198..19811	+	537	60679613	-	BF0016	-	putative arylsulfatase precursor
17	 39.68	0	19915..20418	-	167	60679614	-	BF0017	-	iron transport-like transmembrane protein
18	 43.89	0	20542..22956	-	804	60679615	-	BF0018	-	putative iron transport receptor protein
19	 43.51	0	23157..24836	-	559	60679616	-	BF0019	-	putative sulfate permease transmembrane protein
20	 40.76	0	25097..25675	+	192	60679617	rbr	BF0020	-	putative rubrerythrin
21	 45.87	0	25759..27330	-	523	60679618	nadB	BF0021	-	putative exported L-aspartate oxidase
22	 35.84	-1	27438..27836	+	132	60679619	-	BF0022	-	hypothetical protein
23	 45.46	0	27843..29186	+	447	60679620	pdhD	BF0023	-	putative dihydrolipoamide dehydrogenase
24	 41.70	0	29290..30699	+	469	60679621	dacB	BF0024	-	putative exported D-alanyl-D-alanine carboxypeptidase penicillin-binding protein
25	 48.07	0	30775..32274	-	499	60679622	-	BF0025	-	putative CoA transferase
26	 41.52	0	32311..32640	-	109	60679623	-	BF0026	-	hypothetical protein
27	 46.72	0	32971..34344	+	457	60679624	-	BF0027	-	SAM/TRAM family methylase protein
28	 45.45	0	34462..35880	+	472	60679625	-	BF0028	-	putative alpha-L-fucosidase protein
29	 46.29	0	35936..38050	+	704	60679626	-	BF0029	-	putative beta-galactosidase
30	 38.62	0	38442..40181	-	579	60679627	-	BF0030	-	AraC family/two component family regulatory protein
31	 33.90	-1	41125..42360	+	411	60679628	-	BF0031	-	hypothetical protein
32	 33.33	-1	42396..42704	+	102	60679629	-	BF0032	-	hypothetical protein
33	 33.76	-1	42808..43740	+	310	60679630	-	BF0033	-	hypothetical protein
34	 32.10	-2	43795..43956	+	53	60679631	-	BF0034	-	hypothetical protein
35	 39.47	0	44128..44355	+	75	60679632	-	BF0035	-	hypothetical protein
36	 41.80	0	44481..44669	-	62	60679633	-	BF0036	-	hypothetical protein
37	 33.60	-1	44820..45938	+	372	60679634	-	BF0037	-	hypothetical protein
38	 34.17	-1	45935..46054	+	39	60679635	-	BF0038	-	hypothetical protein
39	 39.62	0	46027..46185	+	52	60679636	-	BF0039	-	hypothetical protein
40	 35.35	-1	46514..47653	+	379	60679637	-	BF0040	-	hypothetical protein
41	 40.60	0	47735..47968	+	77	60679638	-	BF0041	-	hypothetical protein
42	 38.33	0	47969..48088	+	39	60679639	-	BF0042	-	hypothetical protein
43	 43.07	0	48234..48500	+	88	60679640	-	BF0043	-	hypothetical protein
44	 33.51	-1	48631..49749	+	372	60679641	-	BF0044	-	hypothetical protein
45	 33.91	-1	49746..50615	+	289	60679642	-	BF0045	-	lipoprotein
46	 37.86	0	50660..50902	+	80	60679643	-	BF0046	-	hypothetical protein
47	 31.91	-2	50970..52025	+	351	60679644	-	BF0047	-	hypothetical protein
48	 36.56	-1	52054..53106	+	350	60679645	-	BF0048	-	hypothetical protein
49	 28.57	-2	53115..53219	-	34	60679646	-	BF0049	-	hypothetical protein
50	 37.22	-1	53351..54817	+	488	60679647	-	BF0050	-	hypothetical protein
51	 35.90	-1	54894..55127	+	77	60679648	-	BF0051	-	hypothetical protein
52	 39.56	0	55360..55632	+	90	60679649	-	BF0052	-	hypothetical protein
53	 33.33	-1	55722..56789	+	355	60679650	-	BF0053	-	hypothetical protein
54	 38.62	0	56949..57383	+	144	60679651	-	BF0055	-	hypothetical protein
55	 31.82	-2	57397..57528	+	43	60679652	-	BF0056	-	hypothetical protein
56	 40.87	0	57532..57783	+	83	60679653	-	BF0057	-	hypothetical protein
57	 29.95	-2	57856..59007	+	383	60679654	-	BF0058	-	hypothetical protein
58	 32.64	-1	59016..59885	+	289	60679655	-	BF0059	-	putative lipoprotein
59	 38.80	0	59928..60293	+	121	60679656	-	BF0060	-	hypothetical protein
60	 36.34	-1	60262..61524	+	420	60679657	-	BF0061	-	hypothetical protein
61	 29.17	-2	61508..62083	+	191	60679658	-	BF0062	-	hypothetical protein
62	 45.79	0	62080..64062	+	660	60679659	-	BF0063	-	hypothetical protein
63	 36.30	-1	64085..64219	+	44	60679660	-	BF0064	-	hypothetical protein
64	 47.30	0	64260..65111	+	283	60679661	-	BF0065	-	hypothetical protein
65	 40.59	0	65111..65992	+	293	60679662	ftsX	BF0066	-	putative cell division protein
66	 42.74	0	66033..66266	+	77	60679663	-	BF0067	-	hypothetical protein
67	 42.32	0	66273..67073	+	266	60679664	-	BF0068	-	putative undecaprenol kinase
68	 46.72	0	67081..67782	+	233	60679665	-	BF0069	-	putative tRNA pseudouridine synthase
69	 43.34	0	67830..68888	+	352	60679666	-	BF0070	-	putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase
70	 44.81	0	68888..69349	+	153	60679667	-	BF0071	-	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (HPPK)
71	 45.63	0	69732..71024	+	430	60679668	metK	BF0072	-	S-adenosylmethionine synthetase
72	 44.89	0	71156..71752	+	198	60679669	-	BF0073	-	putative lysine decarboxylase
73	 39.11	0	71749..72579	+	276	60679670	-	BF0074	-	hypothetical protein
74	 41.17	0	72584..73336	+	250	60679671	-	BF0075	-	uroporphyrinogen-III synthase
75	 41.98	0	73484..73807	+	107	60679672	rnpA	BF0076	-	ribonuclease P
76	 44.14	0	73804..74025	+	73	60679673	-	BF0077	-	hypothetical protein
77	 43.24	0	74032..74667	+	211	60679674	-	BF0078	-	putative tatD-related DNAse protein
78	 43.77	0	74735..76027	+	430	60679675	tyrS	BF0079	-	putative tyrosyl-tRNA synthetase 1
79	 45.83	0	76140..79412	-	1090	60679676	-	BF0080	-	putative peptidase/protease family protein
80	 45.01	0	80020..81552	+	510	60679677	-	BF0081	-	arylsulfatase
81	 46.14	0	81676..82518	+	280	60679678	-	BF0082	-	5-keto-4-deoxyuronate isomerase
82	 48.48	0	82585..83376	+	263	60679679	gno	BF0083	-	gluconate 5-dehydrogenase
83	 48.92	0	83403..84647	+	414	60679680	-	BF0084	-	hypothetical protein
84	 52.37	+1	84681..85610	-	309	60679681	-	BF0085	-	putative iron-sulfur cluster-binding protein
85	 50.24	+1	85610..86224	-	204	60679682	-	BF0086	-	putative polysaccharide deacetylase
86	 53.07	+1	86241..89600	-	1119	60679683	-	BF0087	-	hypothetical protein
87	 46.14	0	90096..91688	+	530	60679684	-	BF0088	-	hypothetical protein
88	 46.07	0	92218..93834	+	538	60679685	-	BF0089	-	hypothetical protein
89	 46.64	0	93863..94621	+	252	60679686	-	BF0090	-	hypothetical protein
90	 58.64	+2	94794..95603	-	269	60679687	-	BF0091	-	putative metal uptake system ABC transporter ATP-binding protein
91	 55.95	+2	95624..96556	-	310	60679688	-	BF0092	-	putative metal ABC transporter substrate-binding precursor
92	 51.09	+1	96562..97338	-	258	60679689	-	BF0093	-	hypothetical protein
93	 51.36	+1	97347..97823	-	158	60679690	-	BF0094	-	putative transmembrane protein
94	 48.84	0	97808..98800	-	330	60679691	-	BF0095	-	putative transmembrane protein
95	 52.08	+1	98800..100074	-	424	60679692	purD	BF0096	-	phosphoribosylamine--glycine ligase
96	 49.03	0	100096..102255	-	719	60679693	-	BF0097	-	putative exported dipeptidyl peptidase IV
97	 46.23	0	102391..103731	-	446	60679694	-	BF0098	-	putative methylase
98	 49.33	+1	103809..104708	-	299	60679695	-	BF0099	-	putative serine acetyltransferase
99	 40.47	0	104835..106865	+	676	60679696	-	BF0100	-	putative two-component regulator sensor kinase
100	 39.95	0	106878..107633	+	251	60679697	-	BF0101	-	putative two-component response regulator
43.41	MEAN

5.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.