IslandPath Analysis: Francisella novicida U112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.83   STD DEV: 3.29
Francisella tularensis subsp. novicida U112, complete genome - 1..1910031
1719 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.03	0	145..1620	+	491	118496616	dnaA	FTN_0001	-	chromosomal replication initiator protein
2	 27.81	-1	1657..2760	+	367	118496617	dnaN	FTN_0002	-	DNA polymerase III, beta subunit
3	 28.23	-1	2791..4044	-	417	118496618	-	FTN_0003	-	metabolite:H+ symporter (MHS) family protein
4	 30.97	0	4244..5767	+	507	118496619	-	FTN_0004	-	aspartate/glutamate transporter
5	 28.40	-1	5832..6803	+	323	118496620	corA	FTN_0005	-	divalent inorganic cation transporter
6	 26.50	-1	6816..7283	-	155	118496621	-	FTN_0006	-	hypothetical protein
7	 31.13	0	7361..7678	-	105	118496622	-	FTN_0007	-	hypothetical protein
8	 30.13	0	7768..8640	-	290	118496623	-	FTN_0008	-	10 TMS drug/metabolite exporter protein
9	 27.87	-1	8784..8966	+	60	118496624	-	FTN_0009	-	hypothetical protein
10	 31.95	0	9372..9806	-	144	118496625	-	FTN_0010	-	phage terminase, small subunit
11	 25.00	-2	10041..10220	-	59	118496626	-	FTN_0011	-	hypothetical protein
12	 33.33	0	10217..10438	-	73	118496627	-	FTN_0012	-	hypothetical protein
13	 34.67	0	10936..11835	-	299	118496628	-	FTN_0013	-	hypothetical protein
14	 29.77	0	11832..12728	-	298	118496629	-	FTN_0014	-	hypothetical protein
15	 35.00	0	12732..12911	-	59	118496630	-	FTN_0015	-	AlpA family regulatory protein
16	 24.89	-2	13107..13781	-	224	118496631	-	FTN_0016	-	hypothetical protein
17	 31.08	0	13786..15027	-	413	118496632	-	FTN_0017	-	phage integrase
18	 30.47	0	15685..16908	-	407	118496633	sdaC	FTN_0018	-	serine permease
19	 33.12	0	17049..17975	-	308	118496634	pyrB	FTN_0019	-	aspartate carbamoyltransferase
20	 36.59	+1	18117..21401	-	1094	118496635	carB	FTN_0020	-	carbamoyl phosphate synthase large subunit
21	 37.62	+1	21406..22572	-	388	118496636	carA	FTN_0021	-	carbamoyl phosphate synthase small subunit
22	 34.56	0	22992..24047	+	351	118496637	-	FTN_0022	-	histidine acid phosphatase
23	 31.28	0	24068..24748	-	226	118496638	tmpT	FTN_0023	-	thiopurine S-methyltransferase
24	 38.08	+1	24880..26226	+	448	118496639	pyrC	FTN_0024	-	dihydroorotase
25	 29.76	0	26210..26797	-	195	118496640	-	FTN_0025	-	hypothetical protein
26	 32.16	0	27076..27330	+	84	118496641	-	FTN_0026	-	hypothetical protein
27	 31.88	0	28044..28595	+	183	118496642	-	FTN_0027	-	hypothetical protein
28	 31.15	0	28711..29763	-	350	118496643	-	FTN_0028	-	hypothetical protein
29	 28.26	-1	29750..30715	-	321	118496644	-	FTN_0029	-	HlyD family membrane fusion protein
30	 29.41	-1	30802..31209	-	135	118496645	-	FTN_0030	-	hypothetical protein
31	 31.26	0	31335..32204	+	289	118496646	-	FTN_0031	-	LysR family transcriptional regulator
32	 33.97	0	32205..32831	-	208	118496647	-	FTN_0032	-	hypothetical protein
33	 31.88	0	32974..33522	+	182	118496648	-	FTN_0033	-	chorismate mutase
34	 35.73	0	33577..36951	-	1124	118496649	-	FTN_0034	-	hypothetical protein
35	 35.35	0	37218..37862	+	214	118496650	pyrF	FTN_0035	-	orotidine-5'-phosphate decarboxylase
36	 33.87	0	37864..38604	+	246	118496651	pyrD	FTN_0036	-	dihydroorotate oxidase
37	 24.06	-2	40003..40347	-	114	118496652	-	FTN_0037	-	hypothetical protein
38	 24.21	-2	40366..40650	-	94	118496653	-	FTN_0038	-	hypothetical protein
39	 32.39	0	40653..41078	-	141	118496654	-	FTN_0039	-	hypothetical protein
40	 25.59	-2	41093..44347	-	1084	118496655	-	FTN_0040	-	hypothetical protein
41	 28.64	-1	44366..46582	-	738	118496656	-	FTN_0041	-	hypothetical protein
42	 35.84	0	46882..47439	+	185	118496657	-	FTN_0042	-	hypothetical protein
43	 35.03	0	47436..48968	+	510	118496658	-	FTN_0043	-	hypothetical protein
44	 37.81	+1	49002..49649	+	215	118496659	-	FTN_0044	-	hypothetical protein
45	 27.87	-1	49665..50744	+	359	118496660	-	FTN_0045	-	hypothetical protein
46	 29.24	-1	50758..53736	+	992	118496661	-	FTN_0046	-	hypothetical protein
47	 26.93	-1	53754..57530	+	1258	118496662	-	FTN_0047	-	hypothetical protein
48	 29.24	-1	57540..58760	+	406	118496663	-	FTN_0048	-	hypothetical protein
49	 27.64	-1	58770..59594	+	274	118496664	-	FTN_0049	-	hypothetical protein
50	 27.89	-1	59569..61092	+	507	118496665	-	FTN_0050	-	hypothetical protein
51	 28.57	-1	61102..61710	+	202	118496666	-	FTN_0051	-	hypothetical protein
52	 25.05	-2	61717..63780	+	687	118496667	-	FTN_0052	-	hypothetical protein
53	 26.73	-1	63789..64394	+	201	118496668	-	FTN_0053	-	hypothetical protein
54	 38.85	+1	64387..64767	+	126	118496669	-	FTN_0054	-	hypothetical protein
55	 33.69	0	64847..65683	-	278	118496670	tyrA	FTN_0055	-	prephenate dehydrogenase
56	 31.28	0	65951..66388	-	145	118496671	dtd	FTN_0056	-	D-tyrosyl-tRNA deacylase
57	 33.82	0	66662..67894	-	410	118496672	-	FTN_0057	-	major facilitator transporter
58	 31.24	0	67913..69628	-	571	118496673	-	FTN_0058	-	beta-fructofuranosidase
59	 33.98	0	69704..70783	-	359	118496674	leuB	FTN_0059	-	3-isopropylmalate dehydrogenase
60	 32.46	0	70785..71354	-	189	118496675	leuD	FTN_0060	-	isopropylmalate isomerase small subunit
61	 36.81	+1	71357..72766	-	469	118496676	leuC	FTN_0061	-	isopropylmalate isomerase large subunit
62	 34.35	0	72768..74348	-	526	118496677	leuA	FTN_0062	-	2-isopropylmalate synthase
63	 33.33	0	74359..75246	-	295	118496678	ilvE	FTN_0063	-	branched-chain amino acid aminotransferase protein (class IV)
64	 36.90	+1	75645..78278	-	877	118496679	ppdK	FTN_0064	-	pyruvate phosphate dikinase
65	 29.21	-1	78555..78869	-	104	118496680	-	FTN_0065	-	hypothetical protein
66	 33.78	0	79068..81317	-	749	118496681	feoB	FTN_0066	-	ferrous iron transport protein B
67	 30.73	0	81418..82032	-	204	118496682	-	FTN_0067	-	hypothetical protein
68	 34.08	0	82047..82583	-	178	118496683	orn	FTN_0068	-	oligoribonuclease
69	 35.61	0	82586..83155	-	189	118496684	efp	FTN_0069	-	elongation factor P
70	 36.27	+1	83196..83603	-	135	118496685	pilE	FTN_0070	-	Type IV pili, pilus assembly protein
71	 33.98	0	83616..84539	-	307	118496686	-	FTN_0071	-	LPS fatty acid acyltransferase
72	 33.33	0	84600..85499	-	299	118496687	-	FTN_0072	-	LPS fatty acid acyltransferase
73	 33.88	0	85506..87161	-	551	118496688	-	FTN_0073	-	membrane protein of unknown function
74	 34.54	0	87170..87418	-	82	118496689	-	FTN_0074	-	hypothetical protein
75	 29.94	0	87394..87747	-	117	118496690	rnpA	FTN_0075	-	ribonuclease P protein component
76	 37.78	+1	87737..87871	-	44	118496691	rpmH	FTN_0076	-	50S ribosomal protein L34
77	 39.22	+1	87963..88421	-	152	118496692	-	FTN_0077	-	hypothetical protein
78	 35.27	0	88548..89321	+	257	118496693	aroE	FTN_0078	-	shikimate 5-dehydrogenase
79	 34.14	0	89393..90748	+	451	118496694	murC	FTN_0079	-	UDP-N-acetylmuramate-alanine ligase
80	 34.14	0	90741..91613	+	290	118496695	-	FTN_0080	-	SAM-dependent methyltransferase
81	 31.43	0	91624..92358	-	244	118496696	-	FTN_0081	-	hypothetical protein
82	 34.40	0	92435..92998	+	187	118496697	-	FTN_0082	-	HAD superfamily hydrolase
83	 32.94	0	93070..93828	+	252	118496698	-	FTN_0083	-	hypothetical protein
84	 31.47	0	93832..96573	+	913	118496699	-	FTN_0084	-	DNA/RNA helicase
85	 34.89	0	96649..97485	+	278	118496700	uspA	FTN_0085	-	universal stress protein
86	 34.07	0	97601..98830	+	409	118496701	-	FTN_0086	-	metabolite:H+ symporter (MHS) family protein
87	 32.04	0	98862..99479	+	205	118496702	-	FTN_0087	-	allophanate hydrolase subunit 1
88	 34.33	0	99479..100177	+	232	118496703	-	FTN_0088	-	hypothetical protein
89	 36.90	+1	100182..100994	+	270	118496704	-	FTN_0089	-	hydrolase subunit
90	 34.24	0	101001..102545	-	514	118496705	-	FTN_0090	-	acid phosphatase
91	 31.05	0	102854..103510	+	218	118496706	-	FTN_0091	-	hypothetical protein
92	 35.74	0	103528..104523	+	331	118496707	-	FTN_0092	-	inorganic phosphate transporter (PiT) family protein
93	 30.43	0	104604..105119	+	171	118496708	-	FTN_0093	-	cytochrome b561 family protein
94	 30.17	0	105126..106073	-	315	118496709	-	FTN_0094	-	LysR family transcriptional regulator
95	 34.98	0	106142..106807	-	221	118496710	-	FTN_0095	-	nitroreductase
96	 33.62	0	107210..107902	+	230	118496711	-	FTN_0096	-	hypothetical protein
97	 33.42	0	107899..109104	-	401	118496712	-	FTN_0097	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
98	 31.72	0	109204..109821	+	205	118496713	gidB	FTN_0098	-	glucose-inhibited cell division protein
99	 34.08	0	109818..110486	+	222	118496714	-	FTN_0099	-	hypothetical protein
100	 30.97	0	110479..111495	-	338	118496715	-	FTN_0100	-	hypothetical protein
32.83	MEAN

3.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.