IslandPath Analysis: Rickettsia canadensis str. McKiel



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.03   STD DEV: 4.11
Rickettsia canadensis str. McKiel, complete genome - 1..1159772
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.71	0	1..822	+	273	157803190	-	A1E_00005	-	hypothetical protein
2	 31.45	0	1065..1382	+	105	157803191	-	A1E_00010	-	thioredoxin
3	 27.95	0	1375..2136	+	253	157803192	-	A1E_00015	-	O-antigen export system ATP-binding protein RfbE
4	 27.80	0	2295..3071	+	258	157803193	-	A1E_00020	-	hypothetical protein
5	 31.46	0	3068..6214	+	1048	157803194	-	A1E_00025	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 35.35	+1	6333..7127	-	264	157803195	-	A1E_00030	-	UDP-N-acetylglucosamine acyltransferase
7	 33.33	0	7135..7569	-	144	157803196	fabZ	A1E_00035	-	(3R)-hydroxymyristoyl-ACP dehydratase
8	 33.53	0	7570..8598	-	342	157803197	-	A1E_00040	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
9	 39.04	+1	8865..9845	+	326	157803198	-	A1E_00045	-	nifR3-like protein
10	 29.17	0	10469..10900	-	143	157803199	-	A1E_00050	-	hypothetical protein
11	 24.50	-1	10891..11694	-	267	157803200	-	A1E_00055	-	zinc/manganese ABC transporter substrate binding protein
12	 27.56	0	11798..13009	-	403	157803201	-	A1E_00060	-	poly(A) polymerase
13	 30.04	0	13738..14010	-	90	157803202	-	A1E_00065	-	ComEC/Rec2-related protein
14	 19.14	-2	14292..14453	+	53	157803203	-	A1E_00070	-	hypothetical protein
15	 32.14	0	14710..19161	+	1483	157803204	-	A1E_00075	-	cell surface antigen Sca1
16	 26.87	-1	19742..20143	+	133	157803205	lpxD	A1E_00080	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
17	 25.81	-1	21912..22403	-	163	157803206	-	A1E_00085	-	F0F1 ATP synthase subunit B
18	 23.50	-1	22403..22870	-	155	157803207	-	A1E_00090	-	F0F1 ATP synthase subunit B'
19	 37.33	+1	22888..23112	-	74	157803208	-	A1E_00095	-	F0F1 ATP synthase subunit C
20	 28.26	0	23287..24015	-	242	157803209	-	A1E_00100	-	F0F1 ATP synthase subunit A
21	 28.79	0	24020..24283	-	87	157803210	-	A1E_00105	-	hypothetical protein
22	 29.70	0	24453..25277	-	274	157803211	-	A1E_00110	-	protein-disulfide isomerase
23	 34.28	0	25444..25971	+	175	157803212	-	A1E_00115	-	hypothetical protein
24	 30.47	0	26180..27784	-	534	157803213	-	A1E_00120	-	F0F1 ATP synthase subunit A
25	 30.47	0	27939..29021	-	360	157803214	-	A1E_00125	-	recombination protein F
26	 30.04	0	29046..29714	-	222	157803215	recF	A1E_00130	-	recombination protein F
27	 25.56	-1	29838..29927	-	29	157803216	-	A1E_00135	-	hypothetical protein
28	 30.18	0	31347..31916	-	189	157803217	-	A1E_00140	-	hypothetical protein
29	 24.57	-1	31988..32626	+	212	157803218	-	A1E_00145	-	hypothetical protein
30	 29.82	0	33032..33145	+	37	157803219	-	A1E_00150	-	hypothetical protein
31	 32.20	0	33425..34747	-	440	157803220	-	A1E_00155	-	hypothetical protein
32	 27.41	0	34766..34900	-	44	157803221	-	A1E_00160	-	hypothetical protein
33	 36.40	+1	36670..39246	+	858	157803222	-	A1E_00165	-	clpB protein
34	 23.93	-1	39386..39874	-	162	157803223	-	A1E_00170	-	hypothetical protein
35	 33.72	0	40067..41095	-	342	157803224	-	A1E_00175	-	O-sialoglycoprotein endopeptidase
36	 30.07	0	41107..42300	-	397	157803225	-	A1E_00180	-	O-sialoglycoprotein endopeptidase
37	 26.78	-1	43248..43613	+	121	157803226	rpsF	A1E_00185	-	30S ribosomal protein S6
38	 31.60	0	43638..43925	+	95	157803227	rpsR	A1E_00190	-	30S ribosomal protein S18
39	 28.29	0	43937..44452	+	171	157803228	-	A1E_00195	-	50S ribosomal protein L9
40	 29.02	0	44961..46259	+	432	157803229	-	A1E_00200	-	tRNA(Ile)-lysidine synthetase TilS
41	 36.73	+1	46356..48266	+	636	157803230	rplI	A1E_00205	-	50S ribosomal protein L9
42	 36.90	+1	48267..49052	+	261	157803231	-	A1E_00210	-	succinate dehydrogenase iron-sulfur subunit
43	 30.36	0	50050..51126	-	358	157803232	sdhB	A1E_00215	-	succinate dehydrogenase iron-sulfur subunit
44	 29.49	0	51105..51884	-	259	157803233	-	A1E_00220	-	prolipoprotein diacylglyceryl transferase
45	 26.91	-1	52158..53309	+	383	157803234	-	A1E_00225	-	putative carbamate kinase
46	 29.95	0	53499..55181	+	560	157803235	-	A1E_00230	-	putative inner membrane protein translocase component YidC
47	 28.75	0	55181..55726	+	181	157803236	-	A1E_00235	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
48	 27.45	0	56122..56274	+	50	157803237	-	A1E_00240	-	hypothetical protein
49	 28.57	0	56527..56925	-	132	157803238	-	A1E_00245	-	hypothetical protein
50	 31.74	0	58011..59516	+	501	157803239	-	A1E_00250	-	ADP,ATP carrier protein
51	 34.88	0	59583..60872	+	429	157803240	-	A1E_00255	-	putative inner membrane protein translocase component YidC
52	 29.79	0	60902..61324	+	140	157803241	ndk	A1E_00260	-	nucleoside diphosphate kinase
53	 31.73	0	61328..63202	+	624	157803242	-	A1E_00265	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
54	 28.12	0	63722..64489	+	255	157803243	-	A1E_00270	-	soj protein
55	 27.18	0	64476..65336	+	286	157803244	-	A1E_00275	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
56	 30.22	0	65627..67294	+	555	157803245	-	A1E_00280	-	putative ABC transporter ATP-binding protein
57	 19.81	-2	67297..67614	+	105	157803246	-	A1E_00285	-	putative ABC transporter ATP-binding component
58	 33.94	0	67649..68473	+	274	157803247	-	A1E_00290	-	2-dehydro-3-deoxyphosphooctonate aldolase
59	 22.99	-1	69000..69086	+	28	157803248	-	A1E_00295	-	hypothetical protein
60	 33.03	0	69865..70197	-	110	157803249	-	A1E_00300	-	2-dehydro-3-deoxyphosphooctonate aldolase
61	 32.45	0	70360..71490	+	376	157803250	-	A1E_00305	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
62	 31.37	0	71666..73396	+	576	157803251	-	A1E_00310	-	arginyl-tRNA synthetase
63	 28.42	0	73472..74143	+	223	157803252	argS	A1E_00315	-	arginyl-tRNA synthetase
64	 34.42	0	74328..76544	+	738	157803253	-	A1E_00320	-	DNA topoisomerase IV subunit A
65	 34.01	0	76908..78230	-	440	157803254	-	A1E_00325	-	DNA topoisomerase IV subunit A
66	 31.75	0	78514..79080	+	188	157803255	dcd	A1E_00330	-	deoxycytidine triphosphate deaminase
67	 31.15	0	79177..79635	+	152	157803256	-	A1E_00335	-	preprotein translocase subunit SecB
68	 33.19	0	79861..80574	+	237	157803257	-	A1E_00340	-	preprotein translocase subunit SecB
69	 28.83	0	80578..81399	+	273	157803258	-	A1E_00345	-	7-cyano-7-deazaguanine reductase
70	 32.80	0	81672..82232	-	186	157803259	-	A1E_00350	-	hypothetical protein
71	 44.44	+2	82887..82976	-	29	157803260	-	A1E_00360	-	hypothetical protein
72	 31.78	0	83232..83489	+	85	157803261	-	A1E_00370	-	hypothetical protein
73	 34.56	0	83991..84722	-	243	157803262	-	A1E_00380	-	hypothetical protein
74	 32.32	0	84866..85750	+	294	157803263	-	A1E_00385	-	S-adenosylmethionine transporter
75	 33.73	0	85737..86999	+	420	157803264	queF	A1E_00390	-	7-cyano-7-deazaguanine reductase
76	 28.71	0	87321..87623	+	100	157803265	-	A1E_00395	-	preprotein translocase subunit SecG
77	 23.53	-1	87913..88575	+	220	157803266	-	A1E_00400	-	hypothetical protein
78	 28.55	0	88817..94246	-	1809	157803267	secG	A1E_00405	-	preprotein translocase subunit SecG
79	 32.54	0	94415..95794	+	459	157803268	cysS	A1E_00410	-	cysteinyl-tRNA synthetase
80	 32.09	0	96094..96981	+	295	157803269	rpsB	A1E_00415	-	30S ribosomal protein S2
81	 33.87	0	97003..97932	+	309	157803270	tsf	A1E_00420	-	elongation factor Ts
82	 30.22	0	98936..100189	-	417	157803271	-	A1E_00425	-	3-deoxy-D-manno-octulosonic-acid transferase
83	 31.51	0	100186..100842	-	218	157803272	-	A1E_00430	-	3-deoxy-D-manno-octulosonic-acid transferase
84	 33.99	0	100917..102137	-	406	157803273	-	A1E_00435	-	aspartate aminotransferase
85	 23.71	-1	102411..103418	+	335	157803274	-	A1E_00440	-	hypothetical protein
86	 33.72	0	103393..104178	+	261	157803275	-	A1E_00445	-	vacJ lipoprotein precursor
87	 28.09	0	104204..104794	+	196	157803276	-	A1E_00450	-	aspartate aminotransferase
88	 33.43	0	105806..106873	+	355	157803277	-	A1E_00455	-	alanine racemase
89	 35.26	+1	107108..107887	+	259	157803278	-	A1E_00460	-	ABC transporter permease protein
90	 31.36	0	107890..108651	+	253	157803279	-	A1E_00465	-	ribonucleotide ABC transporter ATP-binding protein
91	 23.29	-1	108694..108942	+	82	157803280	alr	A1E_00470	-	alanine racemase
92	 34.69	0	109015..109308	+	97	157803281	rpmB	A1E_00475	-	50S ribosomal protein L28
93	 32.49	0	109305..109541	+	78	157803282	-	A1E_00480	-	50S ribosomal protein L31
94	 30.00	0	110321..110980	+	219	157803283	-	A1E_00485	-	GTPase EngB
95	 23.81	-1	111131..111256	+	41	157803284	-	A1E_00490	-	acetylglutamate kinase
96	 30.56	0	111737..112024	+	95	157803285	-	A1E_00495	-	Type IV secretory pathway, VirB3-like protein
97	 33.66	0	112279..114696	+	805	157803286	-	A1E_00500	-	Type IV secretion/conjugal transfer ATPase, VirB4 family protein
98	 35.41	+1	114838..118152	+	1104	157803287	-	A1E_00505	-	TrbL/VirB6 plasmid conjugative transfer protein
99	 33.43	0	118139..120157	+	672	157803288	-	A1E_00510	-	TrbL/VirB6 plasmid conjugative transfer protein
100	 34.19	0	120164..123070	+	968	157803289	-	A1E_00515	-	VirB6-like protein of the type IV secretion system
31.03	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.