IslandPath Analysis: Clostridium acetobutylicum ATCC 824



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.08   STD DEV: 3.28
Clostridium acetobutylicum ATCC 824, complete genome - 1..3940880
3672 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.39	0	467..1807	+	446	15893299	dnaA	CAC0001	-	chromosomal replication initiation protein
2	 27.79	-1	2064..3164	+	366	15893300	dnaN	CAC0002	-	DNA polymerase III subunit beta
3	 30.43	0	3195..3401	+	68	15893301	-	CAC0003	-	hypothetical protein
4	 27.20	-1	3447..4538	+	363	15893302	recF	CAC0004	-	recombination protein F
5	 30.63	0	4489..4821	+	110	15893303	-	CAC0005	-	hypothetical protein
6	 34.17	0	4844..6757	+	637	15893304	gyrB	CAC0006	-	DNA gyrase subunit B
7	 33.17	0	6783..9275	+	830	15893305	gyrA	CAC0007	-	DNA gyrase subunit A
8	 18.87	-2	14735..15211	+	158	15893306	-	CAC0008	-	HD superfamily hydrolase
9	 28.88	0	15285..15800	+	171	15893307	-	CAC0009	-	hypothetical protein
10	 28.48	0	15826..18546	+	906	15893308	-	CAC0010	-	hypothetical protein
11	 25.67	-1	18653..19513	+	286	15893309	-	CAC0011	-	hypothetical protein
12	 27.78	-1	19543..20946	+	467	15893310	-	CAC0012	-	dehydrogenase
13	 30.74	0	20956..21186	+	76	15893311	-	CAC0013	-	hypothetical protein
14	 35.11	+1	21619..22689	+	356	15893312	-	CAC0014	-	aminotransferase
15	 34.53	+1	22715..23632	+	305	15893313	serA	CAC0015	-	D-3-phosphoglycerate dehydrogenase
16	 30.20	0	23709..24953	+	414	15893314	-	CAC0016	-	SpoOJ/ParA/ParB/repB family protein
17	 32.63	0	24976..26253	+	425	15893315	serS	CAC0017	-	seryl-tRNA synthetase
18	 33.83	0	26363..26965	+	200	15893316	-	CAC0018	-	NADPH-quinone reductase YabF family
19	 28.22	0	27017..27622	-	201	15893317	-	CAC0019	-	AcrR family transcriptional regulator
20	 31.48	0	27787..30426	+	879	15893318	-	CAC0020	-	MDR-type permease
21	 34.12	0	30670..31944	+	424	15893319	serS	CAC0021	-	seryl-tRNA synthetase
22	 33.06	0	32013..33095	-	360	15893320	asd	CAC0022	-	aspartate-semialdehyde dehydrogenase
23	 30.67	0	33214..34113	+	299	15893321	-	CAC0023	-	LysR family transcriptional regulator
24	 28.74	0	34540..35910	+	456	15893322	-	CAC0024	-	hypothetical protein
25	 29.50	0	36200..36721	+	173	15893323	dcd	CAC0025	-	deoxycytidine triphosphate deaminase
26	 27.48	-1	36743..37357	+	204	15893324	-	CAC0026	-	hypothetical protein
27	 31.26	0	37376..38050	+	224	15893325	pyrE	CAC0027	-	orotate phosphoribosyltransferase
28	 34.31	0	38101..39849	-	582	15893326	hydA	CAC0028	-	hydrogene dehydrogenase
29	 31.48	0	40092..40793	+	233	15893327	-	CAC0029	-	hypothetical protein
30	 28.91	0	40771..41832	+	353	15893328	-	CAC0030	-	hypothetical protein
31	 30.62	0	41890..42774	-	294	15893329	psdD	CAC0031	-	phosphatidylserine decarboxylase
32	 31.05	0	42932..43501	+	189	15893330	-	CAC0032	-	TetR/AcrR family transcriptional regulator
33	 30.39	0	43538..45136	-	532	15893331	-	CAC0033	-	ABC1 family protein kinase
34	 29.08	0	45291..45596	-	101	15893332	-	CAC0034	-	hypothetical protein
35	 29.03	0	46266..47078	+	270	15893333	-	CAC0035	-	Serine/threonine phosphatase (inactivated protein)
36	 26.87	-1	47106..48512	+	468	15893334	-	CAC0036	-	FHA domain-containing protein
37	 28.36	0	48546..49631	+	361	15893335	-	CAC0037	-	MinD family ATPase
38	 28.05	0	49650..49895	+	81	15893336	-	CAC0038	-	hypothetical protein
39	 30.96	0	49939..54573	+	1544	15893337	-	CAC0039	-	DNA segregation ATP-ase FtsK/SpoIIIE
40	 34.35	0	54723..55016	+	97	15893338	-	CAC0040	-	hypothetical protein
41	 33.58	0	55224..55634	+	136	15893339	-	CAC0041	-	hypothetical protein
42	 33.82	0	55665..56909	+	414	15893340	-	CAC0042	-	hypothetical protein
43	 25.29	-1	56937..57458	+	173	15893341	-	CAC0043	-	hypothetical protein
44	 26.81	-1	57468..57743	+	91	15893342	-	CAC0044	-	hypothetical protein
45	 29.44	0	57977..59311	+	444	15893343	-	CAC0045	-	TPR repeat-containing protein
46	 28.44	0	59337..59663	+	108	15893344	-	CAC0046	-	hypothetical protein
47	 33.33	0	59688..59999	+	103	15893345	-	CAC0047	-	hypothetical protein
48	 31.10	0	60030..60566	+	178	15893346	-	CAC0048	-	hypothetical protein
49	 30.56	0	60592..61167	+	191	15893347	-	CAC0049	-	hypothetical protein
50	 25.62	-1	61342..61665	+	107	15893348	-	CAC0050	-	hypothetical protein
51	 25.87	-1	61662..61862	+	66	15893349	-	CAC0051	-	hypothetical protein
52	 29.22	0	62070..62531	+	153	15893350	-	CAC0052	-	hypothetical protein
53	 27.93	0	62623..63048	-	141	15893351	-	CAC0053	-	hypothetical protein
54	 33.16	0	63793..64383	+	196	15893352	-	CAC0055	-	hypothetical protein
55	 29.58	0	64672..65124	+	150	15893353	-	CAC0056	-	hypothetical protein
56	 31.29	0	65121..66002	+	293	15893354	-	CAC0057	-	hypothetical protein
57	 31.23	0	66024..66356	+	110	15893355	-	CAC0058	-	hypothetical protein
58	 31.14	0	66377..66649	+	90	15893356	-	CAC0059	-	hypothetical protein
59	 30.38	0	66803..67411	+	202	15893357	-	CAC0060	-	hypothetical protein
60	 32.85	0	67475..69958	+	827	15893358	-	CAC0061	-	Phage-related protein, gp16
61	 32.33	0	69961..70656	+	231	15893359	-	CAC0062	-	hypothetical protein
62	 32.54	0	70657..75594	+	1645	15893360	-	CAC0063	-	hypothetical protein
63	 27.34	-1	75609..75875	+	88	15893361	-	CAC0064	-	hypothetical protein
64	 30.45	0	76018..76398	+	126	15893362	-	CAC0065	-	hypothetical protein
65	 30.75	0	76521..77294	+	257	15893363	-	CAC0066	-	ABC transporter, ATP-binding protein
66	 26.61	-1	77298..77996	+	232	15893364	-	CAC0067	-	ABC transporter permease
67	 24.75	-1	78012..79211	+	399	15893365	-	CAC0068	-	ABC transporter permease
68	 27.95	0	79405..79794	+	129	15893366	-	CAC0069	-	iron-binding protein, hemerythrin
69	 28.59	0	79854..80822	-	322	15893367	-	CAC0070	-	hypothetical protein
70	 33.47	0	81020..81739	+	239	15893368	-	CAC0071	-	hypothetical protein
71	 38.03	+2	81787..82020	-	77	15893369	-	CAC0072	-	hypothetical protein
72	 35.42	+1	82288..83100	+	270	15893370	-	CAC0073	-	hypothetical protein
73	 34.77	+1	84396..84743	-	115	15893371	-	CAC0075	-	ferredoxin
74	 32.89	0	84877..85788	+	303	15893372	-	CAC0076	-	permease
75	 25.55	-1	85766..86497	-	243	15893373	-	CAC0077	-	CAAX-like membrane endopeptidase
76	 28.10	0	86728..87357	+	209	15893374	agrB	CAC0078	-	putative accessory gene regulator protein
77	 31.52	0	87326..87490	+	54	15893375	-	CAC0079	-	hypothetical protein
78	 28.87	0	87617..88960	+	447	15893376	agrC	CAC0080	-	histidine kinase-like ATPase
79	 26.45	-1	88953..89678	+	241	15893377	agrA	CAC0081	-	accessory gene regulator protein A
80	 28.00	0	89767..91827	+	686	15893378	-	CAC0082	-	hypothetical protein
81	 31.00	0	92169..92768	+	199	15893379	-	CAC0083	-	PemK family DNA-binding protein
82	 33.54	0	93048..93524	+	158	15893380	-	CAC0084	-	MutT/NUDIX family hydrolase
83	 33.33	0	93588..93767	+	59	15893381	-	CAC0085	-	hypothetical protein
84	 33.24	0	93773..94852	-	359	15893382	-	CAC0086	-	muconate cycloisomerase
85	 32.88	0	94954..95832	+	292	15893383	-	CAC0087	-	Co/Zn/Cd cation transporter
86	 31.70	0	95918..96406	+	162	15893384	-	CAC0088	-	methionine sulfoxide reductase A
87	 33.02	0	96440..97396	+	318	15893385	serA	CAC0089	-	D-3 phosphoglycerate dehydrogenase
88	 30.61	0	97839..98720	+	293	15893386	-	CAC0090	-	xylanase/chitin deacetylase
89	 34.12	0	99393..100406	+	337	15893387	ilvC	CAC0091	-	ketol-acid reductoisomerase
90	 33.12	0	100675..101133	+	152	15893388	-	CAC0092	-	hypothetical protein
91	 28.06	0	101128..102000	-	290	15893389	-	CAC0093	-	LysR family transcriptional regulator
92	 33.53	0	102143..103693	+	516	15893390	-	CAC0094	-	ferredoxin-nitrite reductase
93	 30.65	0	103870..105060	+	396	15893391	hemA	CAC0095	-	glutamyl-tRNA reductase
94	 27.93	0	105024..105671	+	215	15893392	hemW	CAC0096	-	precorrin-2 dehydrogenase
95	 35.73	+1	105680..106555	+	291	15893393	hemC	CAC0097	-	porphobilinogen deaminase
96	 33.88	0	106555..108027	+	490	15893394	hemD	CAC0098	-	uroporphyrinogen III syntase
97	 35.15	+1	108017..109285	+	422	15893395	hemL	CAC0099	-	glutamate-1-semialdehyde aminotransferase
98	 34.48	+1	109303..110265	+	320	15893396	hemB	CAC0100	-	delta-aminolevulinic acid dehydratase
99	 26.45	-1	110750..112144	+	464	15893397	-	CAC0101	-	methyl-accepting chemotaxis protein
100	 33.01	0	112504..113733	+	409	15893398	-	CAC0102	-	O-acetylhomoserine sulfhydrylase
31.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.