IslandPath Analysis: Haemophilus influenzae PittGG



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.07   STD DEV: 3.85
Haemophilus influenzae PittGG, complete genome - 1..1887192
1667 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.52	0	370..621	+	83	148826758	-	CGSHiGG_00010	-	lipoprotein
2	 41.72	0	647..1111	+	154	148826759	-	CGSHiGG_00015	-	15 kDa peptidoglycan-associated lipoprotein
3	 29.02	-2	1569..2264	-	231	148826760	-	CGSHiGG_00020	-	hypothetical protein
4	 28.38	-2	2360..2581	-	73	148826761	-	CGSHiGG_00025	-	hypothetical protein
5	 38.38	0	2583..2681	-	32	148826762	-	CGSHiGG_00030	-	hypothetical protein
6	 37.21	0	2916..4565	-	549	148826763	pgi	CGSHiGG_00035	-	glucose-6-phosphate isomerase
7	 40.07	0	4662..5744	-	360	148826764	alr	CGSHiGG_00040	-	alanine racemase
8	 40.08	0	7302..8738	-	478	148826765	-	CGSHiGG_00060	-	pyruvate kinase
9	 41.12	0	9247..9567	+	106	148826766	-	CGSHiGG_00065	-	putative integrase
10	 39.25	0	9557..9928	-	123	148826767	-	CGSHiGG_00070	-	hypothetical protein
11	 40.94	0	10056..10226	+	56	148826768	-	CGSHiGG_00075	-	integrase
12	 40.00	0	10165..10689	-	174	148826769	-	CGSHiGG_00080	-	hypothetical protein
13	 41.88	0	10689..10922	+	77	148826770	-	CGSHiGG_00085	-	hypothetical protein
14	 40.03	0	10934..11635	+	233	148826771	-	CGSHiGG_00090	-	hypothetical protein
15	 42.69	+1	11771..12187	+	138	148826772	-	CGSHiGG_00095	-	G protein
16	 34.21	-1	12561..13358	-	265	148826773	-	CGSHiGG_00100	-	lic-1 operon protein
17	 33.48	-1	13358..14059	-	233	148826774	-	CGSHiGG_00105	-	lic-1 operon protein
18	 34.02	-1	14056..14934	-	292	148826775	-	CGSHiGG_00110	-	lic-1 operon protein
19	 32.72	-1	14934..15914	-	326	148826776	-	CGSHiGG_00115	-	LicA
20	 36.43	0	16231..16359	+	42	148826777	-	CGSHiGG_00120	-	hypothetical protein
21	 40.97	0	16426..16962	+	178	148826778	-	CGSHiGG_00125	-	hypothetical protein
22	 43.61	+1	17164..18360	+	398	148826779	-	CGSHiGG_00130	-	Sel1 domain-containing protein
23	 26.67	-2	18363..19262	+	299	148826780	-	CGSHiGG_00135	-	hypothetical protein
24	 35.69	0	19275..20039	+	254	148826781	-	CGSHiGG_00140	-	Sel1 repeat-containing protein
25	 33.72	-1	20039..21061	+	340	148826782	-	CGSHiGG_00145	-	pyruvate kinase
26	 41.07	0	21168..22253	+	361	148826783	prfA	CGSHiGG_00150	-	peptide chain release factor 1
27	 39.91	0	22306..22746	+	146	148826784	-	CGSHiGG_00155	-	hypothetical protein
28	 41.07	0	22746..23624	+	292	148826785	-	CGSHiGG_00160	-	hypothetical protein
29	 38.93	0	23624..24427	+	267	148826786	prfA	CGSHiGG_00165	-	hypothetical protein
30	 39.06	0	24442..25296	+	284	148826787	-	CGSHiGG_00170	-	2-dehydro-3-deoxyphosphooctonate aldolase
31	 39.35	0	25356..26303	+	315	148826788	-	CGSHiGG_00175	-	glycerate dehydrogenase
32	 39.55	0	26303..27379	+	358	148826789	-	CGSHiGG_00180	-	glycerate dehydrogenase
33	 40.16	0	27498..28787	+	429	148826790	-	CGSHiGG_00185	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
34	 39.56	0	28796..29935	+	379	148826791	-	CGSHiGG_00190	-	8-amino-7-oxononanoate synthase
35	 41.67	0	29945..30592	+	215	148826792	-	CGSHiGG_00195	-	hypothetical protein
36	 39.59	0	30580..31362	+	260	148826793	-	CGSHiGG_00200	-	8-amino-7-oxononanoate synthase
37	 34.74	0	31372..32013	+	213	148826794	bioD	CGSHiGG_00205	-	dithiobiotin synthetase
38	 39.91	0	32095..32778	+	227	148826795	bioD	CGSHiGG_00210	-	dithiobiotin synthetase
39	 37.49	0	32778..34028	+	416	148826796	-	CGSHiGG_00215	-	outer membrane-specific lipoprotein transporter subunit LolE
40	 39.12	0	34246..35334	+	362	148826797	-	CGSHiGG_00220	-	phospho-2-dehydro-3-deoxyheptonate aldolase
41	 33.11	-1	35404..35844	-	146	148826798	-	CGSHiGG_00225	-	ImpA
42	 37.99	0	36127..37371	+	414	148826799	-	CGSHiGG_00230	-	serine/threonine transporter SstT
43	 33.82	-1	37492..38106	+	204	148826800	-	CGSHiGG_00235	-	putative NAD(P)H oxidoreductase
44	 36.94	0	38099..38653	+	184	148826801	-	CGSHiGG_00240	-	putative component of anaerobic dehydrogenase
45	 41.37	0	38700..39209	-	169	148826802	-	CGSHiGG_00245	-	nitroreductase
46	 34.21	-1	41240..42037	-	265	148826803	-	CGSHiGG_00265	-	lic-1 operon protein
47	 33.48	-1	42037..42738	-	233	148826804	-	CGSHiGG_00270	-	lic-1 operon protein
48	 34.02	-1	42735..43613	-	292	148826805	-	CGSHiGG_00275	-	lic-1 operon protein
49	 31.79	-1	43613..44716	-	367	148826806	-	CGSHiGG_00280	-	phospho-2-dehydro-3-heoxyheptonate aldolase
50	 40.64	0	44804..46816	-	670	148826807	mnmC	CGSHiGG_00285	-	5-methylaminomethyl-2-thiouridine methyltransferase
51	 40.95	0	46965..48185	+	406	148826808	-	CGSHiGG_00290	-	3-oxoacyl-(acyl carrier protein) synthase I
52	 36.36	0	48252..48515	-	87	148826809	grxA	CGSHiGG_00295	-	glutaredoxin 1
53	 38.39	0	48630..49538	+	302	148826810	-	CGSHiGG_00300	-	ribosomal protein S6 modification protein
54	 38.11	0	49577..50791	-	404	148826811	grxA	CGSHiGG_00305	-	glutaredoxin 1
55	 40.46	0	50833..53076	-	747	148826812	-	CGSHiGG_00310	-	DNA topoisomerase IV subunit A
56	 40.92	0	55113..56048	-	311	148826813	-	CGSHiGG_00325	-	lipid A biosynthesis lauroyl acyltransferase
57	 39.97	0	56145..57575	+	476	148826814	-	CGSHiGG_00330	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
58	 46.88	+2	57940..58035	-	31	148826815	-	CGSHiGG_00335	-	putative type I restriction enzyme HindVIIP R protein
59	 28.89	-2	58384..58608	-	74	148826816	-	CGSHiGG_00340	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
60	 40.88	0	58603..58920	+	105	148826817	-	CGSHiGG_00345	-	ABC transporter ATP-binding protein
61	 37.98	0	59766..60905	-	379	148826818	-	CGSHiGG_00360	-	ABC transporter ATPase component
62	 36.58	0	60978..61748	-	256	148826819	potC	CGSHiGG_00365	-	spermidine/putrescine ABC transporter membrane protein
63	 38.16	0	62591..63709	-	372	148826820	potA	CGSHiGG_00380	-	putrescine/spermidine ABC transporter ATPase protein
64	 36.97	0	64004..65242	+	412	148826821	-	CGSHiGG_00385	-	peptidase T
65	 33.75	-1	65719..66201	-	160	148826822	-	CGSHiGG_00390	-	peptidase T
66	 37.66	0	66474..67352	+	292	148826823	-	CGSHiGG_00395	-	cytidine deaminase
67	 39.54	0	67395..68360	-	321	148826824	-	CGSHiGG_00400	-	hypothetical protein
68	 39.14	0	68357..69871	-	504	148826825	-	CGSHiGG_00405	-	cytidine deaminase
69	 39.28	0	72008..73672	+	554	148826826	-	CGSHiGG_00420	-	glutaminyl-tRNA synthetase
70	 38.19	0	73750..74202	+	150	148826827	-	CGSHiGG_00425	-	hypothetical protein
71	 42.54	+1	76372..78564	+	730	148826828	-	CGSHiGG_00440	-	glycogen branching enzyme
72	 41.57	0	78663..80642	+	659	148826829	-	CGSHiGG_00445	-	glycogen branching enzyme
73	 40.86	0	80665..81966	+	433	148826830	glgC	CGSHiGG_00450	-	glucose-1-phosphate adenylyltransferase
74	 46.12	+2	82074..83504	+	476	148826831	glgA	CGSHiGG_00455	-	glycogen synthase
75	 41.24	0	83751..86216	+	821	148826832	glgA	CGSHiGG_00460	-	glycogen synthase
76	 42.76	+1	86477..88015	+	512	148826833	pntA	CGSHiGG_00465	-	NAD(P) transhydrogenase subunit alpha
77	 41.75	0	88026..89450	+	474	148826834	pntB	CGSHiGG_00470	-	pyridine nucleotide transhydrogenase
78	 39.09	0	90528..93134	+	868	148826835	-	CGSHiGG_00485	-	DNA topoisomerase I
79	 34.53	0	93210..93794	-	194	148826836	-	CGSHiGG_00490	-	DNA topoisomerase I
80	 41.10	0	94079..96010	+	643	148826837	-	CGSHiGG_00495	-	threonyl-tRNA synthetase
81	 32.79	-1	96122..98701	-	859	148826838	-	CGSHiGG_00500	-	putative zinc protease
82	 33.74	-1	98670..98915	-	81	148826839	-	CGSHiGG_00505	-	zinc protease
83	 36.19	0	101601..101810	-	69	148826840	-	CGSHiGG_00520	-	putative molybdenum-pterin binding protein
84	 40.00	0	101928..102257	-	109	148826841	-	CGSHiGG_00525	-	putative dissimilatory sulfite reductase, desulfoviridin, gamma subunit
85	 38.58	0	103348..104682	+	444	148826842	-	CGSHiGG_00540	-	condesin subunit F
86	 30.93	-1	104695..105651	+	318	148826843	-	CGSHiGG_00545	-	modification methylase HaeII
87	 39.71	0	107452..111984	+	1510	148826844	mukB	CGSHiGG_00570	-	cell division protein MukB
88	 27.94	-2	112054..112962	+	302	148826845	-	CGSHiGG_00575	-	hypothetical protein
89	 35.40	0	113211..113840	+	209	148826846	mukB	CGSHiGG_00580	-	cell division protein MukB
90	 35.37	0	113853..115274	+	473	148826847	sbcB	CGSHiGG_00585	-	exonuclease I
91	 31.60	-1	115682..115969	+	95	148826848	-	CGSHiGG_00590	-	hypothetical protein
92	 32.82	-1	115956..116150	-	64	148826849	-	CGSHiGG_00595	-	hypothetical protein
93	 29.87	-2	116339..116800	-	153	148826850	-	CGSHiGG_00600	-	hypothetical protein
94	 29.57	-2	116797..116982	-	61	148826851	-	CGSHiGG_00605	-	RstR-like phage repressor protein
95	 34.29	0	117135..118283	+	382	148826852	-	CGSHiGG_00610	-	hypothetical protein
96	 34.25	0	118323..118649	+	108	148826853	-	CGSHiGG_00615	-	hypothetical protein
97	 30.00	-2	118649..118738	+	29	148826854	-	CGSHiGG_00620	-	hypothetical protein
98	 34.80	0	118735..119007	+	90	148826855	-	CGSHiGG_00625	-	hypothetical protein
99	 38.96	0	119026..119256	+	76	148826856	-	CGSHiGG_00630	-	hypothetical protein
100	 33.48	-1	119307..120707	+	466	148826857	-	CGSHiGG_00635	-	hypothetical protein
38.07	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.