IslandPath Analysis: Thermoanaerobacter pseudethanolicus ATCC 33223



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.32   STD DEV: 4.01
Thermoanaerobacter pseudethanolicus ATCC 33223, complete genome - 1..2362816
2243 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.18	0	79..1410	+	443	167036432	-	Teth39_0001	-	chromosomal replication initiation protein
2	 31.36	0	1646..2758	+	370	167036433	-	Teth39_0002	-	DNA polymerase III subunit beta
3	 28.50	-1	2779..2985	+	68	167036434	-	Teth39_0003	-	RNA-binding S4 domain-containing protein
4	 27.36	-1	2996..4084	+	362	167036435	-	Teth39_0004	-	DNA replication and repair protein RecF
5	 35.27	0	4096..4353	+	85	167036436	-	Teth39_0005	-	hypothetical protein
6	 33.29	0	4366..6624	+	752	167036437	-	Teth39_0006	-	Alpha-glucosidase
7	 32.38	0	6642..7373	-	243	167036438	-	Teth39_0007	-	glutamine amidotransferase
8	 28.69	-1	7370..8725	-	451	167036439	-	Teth39_0008	-	hypothetical protein
9	 31.75	0	8739..8864	-	41	167036440	-	Teth39_0009	-	hypothetical protein
10	 35.28	0	9099..11000	+	633	167036441	-	Teth39_0010	-	DNA gyrase subunit B
11	 35.97	0	11015..13438	+	807	167036442	-	Teth39_0011	-	DNA gyrase, A subunit
12	 35.31	0	13464..14477	-	337	167036443	-	Teth39_0012	-	NADH:flavin oxidoreductase/NADH oxidase
13	 34.28	0	15006..15533	+	175	167036444	-	Teth39_0013	-	acetolactate synthase, small subunit
14	 37.05	0	15533..16528	+	331	167036445	-	Teth39_0014	-	ketol-acid reductoisomerase
15	 36.84	0	16548..17744	+	398	167036446	-	Teth39_0015	-	pyruvate carboxyltransferase
16	 38.68	+1	17735..18988	+	417	167036447	-	Teth39_0016	-	3-isopropylmalate dehydratase large subunit
17	 34.78	0	18991..19473	+	160	167036448	-	Teth39_0017	-	3-isopropylmalate dehydratase small subunit
18	 37.17	0	19476..20543	+	355	167036449	-	Teth39_0018	-	3-isopropylmalate dehydrogenase
19	 40.24	+1	20540..22219	+	559	167036450	-	Teth39_0019	-	dihydroxy-acid dehydratase
20	 37.30	0	22216..23880	+	554	167036451	-	Teth39_0020	-	acetolactate synthase, large subunit, biosynthetic type
21	 34.16	0	24076..25158	+	360	167036452	-	Teth39_0021	-	riboflavin biosynthesis protein RibD
22	 31.25	0	25169..25792	+	207	167036453	-	Teth39_0022	-	riboflavin synthase, alpha subunit
23	 35.94	0	25830..27020	+	396	167036454	-	Teth39_0023	-	GTP cyclohydrolase II
24	 36.77	0	27098..27562	+	154	167036455	-	Teth39_0024	-	riboflavin synthase
25	 34.18	0	27580..28758	-	392	167036456	-	Teth39_0025	-	hypothetical protein
26	 33.48	0	28792..30174	-	460	167036457	-	Teth39_0026	-	IS605 family transposase OrfB
27	 30.99	0	30485..30655	-	56	167036458	-	Teth39_0027	-	hypothetical protein
28	 32.20	0	30793..31323	+	176	167036459	-	Teth39_0028	-	signal peptidase I
29	 37.11	0	31599..32870	+	423	167036460	-	Teth39_0029	-	seryl-tRNA synthetase
30	 33.96	0	33516..34637	-	373	167036461	-	Teth39_0030	-	phage integrase family protein
31	 26.30	-2	34701..35468	-	255	167036462	-	Teth39_0031	-	phospholipase D/transphosphatidylase
32	 33.85	0	35855..36244	-	129	167036463	-	Teth39_0032	-	XRE family transcriptional regulator
33	 32.38	0	36396..36605	+	69	167036464	-	Teth39_0033	-	XRE family transcriptional regulator
34	 34.85	0	36691..37020	+	109	167036465	-	Teth39_0034	-	excision promoter, Xis
35	 28.48	-1	37215..37379	+	54	167036466	-	Teth39_0035	-	hypothetical protein
36	 23.68	-2	37424..37765	+	113	167036467	-	Teth39_0036	-	hypothetical protein
37	 25.67	-2	37749..38492	-	247	167036468	-	Teth39_0037	-	hypothetical protein
38	 30.35	0	38682..39050	+	122	167036469	-	Teth39_0038	-	hypothetical protein
39	 39.20	+1	39233..40237	+	334	167036470	-	Teth39_0039	-	hypothetical protein
40	 32.62	0	40284..40562	+	92	167036471	-	Teth39_0040	-	hypothetical protein
41	 38.72	+1	40580..41266	+	228	167036472	-	Teth39_0041	-	metal dependent phosphohydrolase
42	 34.11	0	41263..41520	+	85	167036473	-	Teth39_0042	-	hypothetical protein
43	 27.14	-1	41513..41980	+	155	167036474	-	Teth39_0043	-	nucleic acid binding protein
44	 39.79	+1	42040..43077	+	345	167036475	-	Teth39_0044	-	StbA family protein
45	 32.22	0	43259..43528	+	89	167036476	-	Teth39_0045	-	hypothetical protein
46	 38.19	0	43829..44116	+	95	167036477	-	Teth39_0046	-	hypothetical protein
47	 33.94	0	44140..44469	+	109	167036478	-	Teth39_0047	-	hypothetical protein
48	 31.47	0	44516..45160	+	214	167036479	-	Teth39_0048	-	hypothetical protein
49	 36.94	0	45616..47028	+	470	167036480	-	Teth39_0049	-	RNA-directed DNA polymerase (Reverse transcriptase)
50	 41.19	+1	47349..47717	+	122	167036481	-	Teth39_0050	-	hypothetical protein
51	 42.44	+2	47732..48895	+	387	167036482	-	Teth39_0051	-	hypothetical protein
52	 38.35	+1	48885..50717	+	610	167036483	-	Teth39_0052	-	TRAG family protein
53	 37.86	0	50730..50972	+	80	167036484	-	Teth39_0053	-	hypothetical protein
54	 36.95	0	51014..51871	+	285	167036485	-	Teth39_0054	-	hypothetical protein
55	 31.18	0	51877..52155	+	92	167036486	-	Teth39_0055	-	hypothetical protein
56	 34.34	0	52244..52840	+	198	167036487	-	Teth39_0056	-	hypothetical protein
57	 34.84	0	52977..54302	+	441	167036488	-	Teth39_0057	-	integrase catalytic subunit
58	 33.83	0	54319..55119	+	266	167036489	-	Teth39_0058	-	AAA ATPase
59	 32.85	0	55392..56018	+	208	167036490	-	Teth39_0059	-	hypothetical protein
60	 43.14	+2	56033..57817	+	594	167036491	-	Teth39_0060	-	Type IV secretory pathway VirB4 components-like protein
61	 35.77	0	57817..58761	+	314	167036492	-	Teth39_0061	-	peptidase M23B
62	 30.93	0	58776..59357	+	193	167036493	-	Teth39_0062	-	hypothetical protein
63	 32.97	0	59341..59883	+	180	167036494	-	Teth39_0063	-	SAF domain-containing protein
64	 36.68	0	59889..60605	+	238	167036495	-	Teth39_0064	-	ATPase involved in chromosome partitioning-like protein
65	 38.34	+1	60574..61731	+	385	167036496	-	Teth39_0065	-	type II secretion system protein E
66	 32.89	0	61733..62638	+	301	167036497	-	Teth39_0066	-	type II secretion system protein
67	 32.80	0	62635..63384	+	249	167036498	-	Teth39_0067	-	hypothetical protein
68	 34.68	0	63418..63639	+	73	167036499	-	Teth39_0068	-	hypothetical protein
69	 41.67	+1	63740..64039	+	99	167036500	-	Teth39_0069	-	hypothetical protein
70	 29.41	-1	64036..64443	+	135	167036501	-	Teth39_0070	-	hypothetical protein
71	 28.57	-1	64443..65261	+	272	167036502	-	Teth39_0071	-	hypothetical protein
72	 31.92	0	65925..66278	+	117	167036503	-	Teth39_0072	-	hypothetical protein
73	 35.74	0	66292..66873	+	193	167036504	-	Teth39_0073	-	XRE family transcriptional regulator
74	 39.76	+1	66953..67621	+	222	167036505	-	Teth39_0074	-	hypothetical protein
75	 36.30	0	67713..70982	+	1089	167036506	-	Teth39_0075	-	peptidoglycan binding domain-containing protein
76	 32.04	0	70979..71365	+	128	167036507	-	Teth39_0076	-	peptidase A24A, prepilin type IV
77	 37.76	0	71395..71913	+	172	167036508	-	Teth39_0077	-	metal dependent phosphohydrolase
78	 38.39	+1	71906..72934	+	342	167036509	-	Teth39_0078	-	hypothetical protein
79	 33.01	0	73393..73701	+	102	167036510	-	Teth39_0079	-	hypothetical protein
80	 29.45	-1	73921..74769	+	282	167036511	-	Teth39_0080	-	radical SAM domain-containing protein
81	 28.73	-1	74891..75976	+	361	167036512	-	Teth39_0081	-	hypothetical protein
82	 35.42	0	76461..77084	+	207	167036513	-	Teth39_0082	-	hypothetical protein
83	 36.31	0	77053..78729	+	558	167036514	-	Teth39_0083	-	Type IV secretory pathway VirD4 components-like protein
84	 35.74	0	79852..80100	+	82	167036515	-	Teth39_0084	-	hypothetical protein
85	 32.94	0	80107..80361	+	84	167036516	-	Teth39_0085	-	hypothetical protein
86	 29.82	-1	80859..81713	+	284	167036517	-	Teth39_0086	-	hypothetical protein
87	 44.61	+2	81822..82025	+	67	167036518	-	Teth39_0087	-	DNA binding domain-containing protein
88	 35.29	0	82479..83090	+	203	167036519	-	Teth39_0088	-	zinc finger, CHC2-family protein
89	 34.92	0	83066..84448	+	460	167036520	-	Teth39_0089	-	hypothetical protein
90	 28.10	-1	84702..85121	+	139	167036521	-	Teth39_0090	-	hypothetical protein
91	 28.89	-1	86078..86257	-	59	167036522	-	Teth39_0091	-	DNA binding domain-containing protein
92	 34.16	0	86489..86851	+	120	167036523	-	Teth39_0092	-	hypothetical protein
93	 32.10	0	86985..88196	+	403	167036524	-	Teth39_0093	-	phage integrase family protein
94	 33.78	0	88827..89048	+	73	167036525	-	Teth39_0094	-	hypothetical protein
95	 33.54	0	89099..90055	+	318	167036526	-	Teth39_0095	-	beta-lactamase domain-containing protein
96	 35.82	0	90142..91389	+	415	167036527	-	Teth39_0096	-	hypothetical protein
97	 36.80	0	91842..93254	+	470	167036528	-	Teth39_0097	-	RNA-directed DNA polymerase (Reverse transcriptase)
98	 31.88	0	93411..94853	+	480	167036529	-	Teth39_0098	-	peptidase M1, membrane alanine aminopeptidase
99	 28.15	-1	94850..95833	-	327	167036530	-	Teth39_0099	-	DNA replication protein DnaC
100	 33.64	0	95826..96800	-	324	167036531	-	Teth39_0100	-	primosome, DnaD subunit
34.32	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.