IslandPath Analysis: Desulfotalea psychrophila LSv54



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.83   STD DEV: 4.73
Desulfotalea psychrophila LSv54, complete genome - 1..3523383
3116 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.90	0	94..774	-	226	51243853	-	DP0001	-	methyltransferase
2	 50.55	0	810..1634	+	274	51243854	-	DP0002	-	hypothetical protein
3	 48.59	0	1641..2564	-	307	51243855	-	DP0003	-	hypothetical protein
4	 45.35	0	2605..3453	-	282	51243856	-	DP0004	-	hypothetical protein
5	 50.06	0	3524..4294	-	256	51243857	-	DP0005	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
6	 44.90	0	4854..5579	-	241	51243858	-	DP0006	-	hypothetical protein
7	 45.31	0	5662..7749	-	695	51243859	-	DP0007	-	elongation factor G
8	 38.04	-1	7906..8181	-	91	51243860	-	DP0008	-	hypothetical protein
9	 48.30	0	8464..8610	+	48	51243861	-	DP0009	-	hypothetical protein
10	 43.64	0	8650..8814	+	54	51243862	-	DP0010	-	hypothetical protein
11	 46.04	0	8888..10249	+	453	51243863	-	DP0011	-	hypothetical protein
12	 44.44	0	10618..10995	-	125	51243864	-	DP0012	-	hypothetical protein
13	 40.79	-1	11339..12304	+	321	51243865	-	DP0013	-	glycosyltransferase involved capsular polysaccharide biosynthesis
14	 50.89	0	12672..14015	-	447	51243866	-	DP0014	-	UDP-glucose dehydrogenase
15	 44.24	0	14205..14534	-	109	51243867	-	DP0015	-	hypothetical protein
16	 44.99	0	14527..15324	-	265	51243868	-	DP0016	-	hypothetical protein
17	 44.11	0	15364..17433	-	689	51243869	-	DP0017	-	O-antigen acetylase
18	 38.54	-1	17641..18408	-	255	51243870	-	DP0018	-	hypothetical protein
19	 37.50	-1	18556..19203	-	215	51243871	-	DP0019	-	maltose acetyltransferase
20	 47.60	0	19350..20576	-	408	51243872	-	DP0020	-	hypothetical protein
21	 42.75	0	20603..21016	+	137	51243873	-	DP0021	-	hypothetical protein
22	 53.86	+1	21049..21915	-	288	51243874	-	DP0022	-	UTP-glucose-1-phosphate uridylyltransferase
23	 52.57	+1	22263..23234	-	323	51243875	-	DP0023	-	GDP-L-fucose synthetase
24	 40.62	-1	23902..24450	-	182	51243876	-	DP0024	-	hypothetical protein
25	 51.07	0	24849..25970	-	373	51243877	-	DP0025	-	GDP-mannose-4,6-dehydratase
26	 50.24	0	26962..27990	+	342	51243878	-	DP0026	-	UDP-glucose 4-epimerase
27	 54.22	+1	28135..28383	+	82	51243879	-	DP0027	-	hypothetical protein
28	 50.17	0	28476..29657	-	393	51243880	-	DP0028	-	pilin glycosylation protein
29	 48.31	0	29680..30300	-	206	51243881	-	DP0029	-	pilin glycosylation protein
30	 46.57	0	30297..30893	-	198	51243882	-	DP0030	-	galactosyltransferase
31	 49.02	0	30890..32017	-	375	51243883	-	DP0031	-	glycosyl transferase (WbpU)
32	 44.88	0	32206..33348	-	380	51243884	-	DP0032	-	lipopolysaccharide biosynthesis protein (WbpT)
33	 47.77	0	33362..35266	-	634	51243885	-	DP0033	-	asparagine synthetase (WbpS)
34	 43.65	0	35717..35968	-	83	51243886	-	DP0034	-	transposase
35	 48.81	0	36010..36345	-	111	51243887	-	DP0035	-	transposase
36	 34.51	-2	36674..37183	-	169	51243888	-	DP0036	-	galactoside O-acetyltransferase
37	 30.07	-2	37185..38348	-	387	51243889	-	DP0037	-	hypothetical protein
38	 34.70	-2	38348..39298	-	316	51243890	-	DP0038	-	glycosyl transferase
39	 44.85	0	39288..40832	-	514	51243891	-	DP0039	-	O-antigen transporter
40	 35.80	-2	40810..41337	-	175	51243892	-	DP0040	-	acetyltransferase
41	 36.00	-2	41334..42308	-	324	51243893	-	DP0041	-	hypothetical protein
42	 34.35	-2	42313..43002	-	229	51243894	-	DP0042	-	hypothetical protein
43	 42.64	0	43005..44111	-	368	51243895	-	DP0043	-	cell wall biogenesis protein (WbpE)
44	 49.09	0	44108..44989	-	293	51243896	-	DP0044	-	glucose-1-phosphate thymidylyltransferase
45	 47.84	0	44989..46098	-	369	51243897	-	DP0045	-	dTDP-D-glucose-4,6-dehydratase
46	 45.57	0	46064..47101	-	345	51243898	-	DP0046	-	lipopolysaccharide biosynthetic protein (WbpP)
47	 45.43	0	47110..48390	-	426	51243899	-	DP0047	-	lipopolysaccharide biosynthesis protein (WbpO)
48	 50.89	0	48436..50577	-	713	51243900	-	DP0048	-	lipopolysaccharide biosynthesis protein (WbpM)
49	 38.63	-1	51227..51679	-	150	51243901	-	DP0049	-	hypothetical protein
50	 51.34	0	53139..54221	-	360	51243902	-	DP0050	-	hypothetical protein
51	 46.41	0	55062..56384	-	440	51243903	-	DP0051	-	hypothetical protein
52	 44.86	0	56886..58550	-	554	51243904	-	DP0052	-	hypothetical protein
53	 51.54	0	58967..59845	+	292	51243905	-	DP0053	-	endonuclease IV
54	 39.92	-1	59797..60054	+	85	51243906	-	DP0054	-	hypothetical protein
55	 41.78	-1	60061..60285	-	74	51243907	-	DP0055	-	hypothetical protein
56	 40.38	-1	60312..60467	-	51	51243908	-	DP0056	-	hypothetical protein
57	 29.86	-2	60451..60594	-	47	51243909	-	DP0057	-	hypothetical protein
58	 54.80	+1	60668..61636	-	322	51243910	-	DP0058	-	D-alanyl-D-alanine ligase
59	 52.21	+1	61651..63165	+	504	51243911	-	DP0059	-	glycolate oxidase subunit (GlcD)
60	 44.44	0	63667..63909	+	80	51243912	-	DP0060	-	hypothetical protein
61	 50.85	0	64310..66958	+	882	51243913	-	DP0061	-	poly(A) polymerase
62	 49.84	0	67019..67654	+	211	51243914	-	DP0062	-	hypothetical protein
63	 56.39	+2	68477..69352	+	291	51243915	-	DP0063	-	hypothetical protein
64	 49.76	0	69678..71795	+	705	51243916	-	DP0064	-	anaerobic ribonucleoside triphosphate reductase
65	 50.40	0	71795..72415	+	206	51243917	pflA	DP0065	-	pyruvate formate-lyase activating enzyme
66	 48.19	0	72941..74131	-	396	51243918	-	DP0066	-	long-chain fatty acid ABC transporter
67	 48.01	0	74258..75988	-	576	51243919	-	DP0067	-	long-chain-fatty-acid--CoA ligase
68	 47.60	0	76724..77662	-	312	51243920	-	DP0068	-	hypothetical protein
69	 45.90	0	77947..78471	+	174	51243921	-	DP0069	-	hypothetical protein
70	 47.39	0	78558..79382	+	274	51243922	-	DP0070	-	hypothetical protein
71	 51.41	0	79395..80318	+	307	51243923	-	DP0071	-	2-dehydropantoate 2-reductase
72	 48.95	0	80828..81397	+	189	51243924	-	DP0072	-	hypothetical protein
73	 49.66	0	81416..81856	+	146	51243925	-	DP0073	-	ADP-ribose pyrophosphatase
74	 45.92	0	82079..83881	-	600	51243926	-	DP0074	-	GTP-binding protein TypA/BipA
75	 45.87	0	84027..84377	+	116	51243927	-	DP0075	-	hypothetical protein
76	 48.42	0	84570..85172	+	200	51243928	-	DP0076	-	hypothetical protein
77	 51.71	+1	85530..86960	+	476	51243929	-	DP0077	-	hypothetical protein
78	 41.50	-1	87007..87594	-	195	51243930	-	DP0078	-	hypothetical protein
79	 47.98	0	87618..88259	-	213	51243931	-	DP0079	-	related arylesterase [precursor]
80	 48.98	0	88359..90128	+	589	51243932	-	DP0080	-	multidrug ABC transporter ATP-binding protein
81	 50.69	0	90125..91933	+	602	51243933	-	DP0081	-	ABC transporter ATP-binding protein
82	 49.80	0	92471..92980	-	169	51243934	-	DP0082	-	NADH dehydrogenase/NAD(P)H nitroreductase
83	 30.35	-2	93067..93267	+	66	51243935	-	DP0083	-	hypothetical protein
84	 42.37	0	93304..93624	+	106	51243936	-	DP0084	-	hypothetical protein
85	 53.17	+1	94234..95085	+	283	51243937	-	DP0085	-	D-alanine aminotransferase
86	 49.45	0	95087..95719	+	210	51243938	-	DP0086	-	hypothetical protein
87	 48.07	0	95999..97525	+	508	51243939	-	DP0087	-	AAS bifunctional protein
88	 46.67	0	97644..98453	+	269	51243940	-	DP0088	-	glutamine transport system permease protein (GlnP)
89	 48.67	0	98469..99296	+	275	51243941	-	DP0089	-	substrate-binding periplasmic protein (FliY)
90	 49.00	0	99321..100220	+	299	51243942	-	DP0090	-	glutamine transport system permease protein (GlnP)
91	 46.33	0	100247..101623	+	458	51243943	-	DP0091	-	hypothetical protein
92	 40.63	-1	101672..102082	+	136	51243944	-	DP0092	-	hypothetical protein
93	 45.68	0	102207..102959	+	250	51243945	-	DP0093	-	histidinol-phosphatase
94	 48.36	0	103204..105273	+	689	51243946	-	DP0094	-	periplasmic protein (AsmA)
95	 46.09	0	105352..105798	-	148	51243947	-	DP0095	-	hypothetical protein
96	 50.49	0	105860..106675	-	271	51243948	-	DP0096	-	GufA protein
97	 48.60	0	106876..108198	-	440	51243949	-	DP0097	-	Na+/H+ antiporter
98	 48.09	0	108327..108719	-	130	51243950	-	DP0098	-	hypothetical protein
99	 44.94	0	109547..109882	-	111	51243951	-	DP0099	-	secretion protein SecG
100	 47.75	0	109899..110654	-	251	51243952	-	DP0100	-	triosephosphate isomerase
46.83	MEAN

4.73	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.