IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS8232



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.53 STD DEV: 3.79
Streptococcus pyogenes MGAS8232, complete genome - 1..1895017
1839 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.26	-1	202..1557	+	451	19745202	dnaA	spyM18_0001	-	chromosomal replication initiation protein
2	 33.33	-1	1709..2845	+	378	19745203	dnaN	spyM18_0002	-	DNA polymerase III subunit beta
3	 37.28	0	3447..4562	+	371	19745204	-	spyM18_0004	-	translation-associated GTPase
4	 31.93	-1	4632..5201	+	189	19745205	pth	spyM18_0005	-	peptidyl-tRNA hydrolase
5	 35.62	0	5204..8707	+	1167	19745206	trcF	spyM18_0007	-	putative transcription-repair coupling factor
6	 31.14	-1	8869..9141	+	90	19745207	-	spyM18_0008	-	hypothetical protein
7	 26.61	-2	9128..9499	+	123	19745208	divIC	spyM18_0009	-	putative cell division protein
8	 31.62	-1	9634..10920	+	428	19745209	-	spyM18_0011	-	hypothetical protein
9	 28.28	-2	10917..12203	+	428	19745210	mesJ	spyM18_0012	-	putative cell-cycle protein
10	 30.20	-2	12208..12750	+	180	19745211	hpt	spyM18_0013	-	hypoxanthine-guanine phosphoribosyltransferase
11	 37.83	0	12772..14751	+	659	19745212	ftsH	spyM18_0014	-	putative cell division protein
12	 32.69	-1	15077..16468	+	463	19745213	-	spyM18_0015	-	putative amino acid permease
13	 40.69	0	31158..32354	+	398	19745214	-	spyM18_0020	-	putative secreted protein
14	 38.94	0	32607..33569	+	320	19745215	prsA	spyM18_0021	-	ribose-phosphate pyrophosphokinase
15	 30.95	-2	33755..34510	+	251	19745216	recO	spyM18_0022	-	DNA repair protein RecO
16	 38.00	0	34608..35615	+	335	19745217	-	spyM18_0023	-	putative glycerol-3-phosphate acyltransferase PlsX
17	 30.86	-2	35608..35850	+	80	19745218	acp	spyM18_0024	-	acyl carrier protein
18	 35.65	0	35971..36705	+	244	19745219	purC	spyM18_0025	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
19	 44.99	+1	36781..40554	+	1257	19745220	purL	spyM18_0026	-	putative phosphoribosylformylglycinamidine synthase II
20	 38.28	0	40715..42169	+	484	19745221	purF	spyM18_0027	-	amidophosphoribosyltransferase
21	 43.50	+1	42197..43219	+	340	19745222	purM	spyM18_0028	-	phosphoribosylaminoimidazole synthetase
22	 47.21	+2	43387..43941	+	184	19745223	purN	spyM18_0029	-	phosphoribosylglycinamide formyltransferase
23	 47.22	+2	44125..45672	+	515	19745224	purH	spyM18_0030	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
24	 39.47	0	45731..46855	-	374	19745225	-	spyM18_0031	-	putative choline binding protein
25	 48.82	+2	47108..48373	+	421	19745226	purD	spyM18_0032	-	phosphoribosylamine--glycine ligase
26	 48.20	+2	48532..49143	+	203	19745227	purE	spyM18_0033	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
27	 49.73	+2	49094..50203	+	369	19745228	purK	spyM18_0034	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
28	 28.71	-2	50224..51564	+	446	19745229	-	spyM18_0035	-	hypothetical protein
29	 31.58	-1	51545..51658	+	37	19745230	-	spyM18_0036	-	hypothetical protein
30	 44.78	+1	51933..53225	+	430	19745231	purB	spyM18_0037	-	adenylosuccinate lyase
31	 29.39	-2	53359..54270	+	303	19745232	-	spyM18_0038	-	hypothetical protein
32	 38.97	0	54431..55495	+	354	19745233	ruvB	spyM18_0039	-	Holliday junction DNA helicase B
33	 35.39	0	55633..56070	+	145	19745234	-	spyM18_0040	-	putative protein-tyrosine phosphatase
34	 35.07	0	56093..56494	+	133	19745235	-	spyM18_0041	-	hypothetical protein
35	 36.77	0	56491..58266	+	591	19745236	-	spyM18_0042	-	putative acyltransferase
36	 40.22	0	58575..61217	+	880	19745237	adhE	spyM18_0043	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
37	 42.28	0	61469..62485	+	338	19745238	adhP	spyM18_0045	-	alcohol dehydrogenase
38	 41.32	0	62873..64162	+	429	19745239	-	spyM18_0048	-	Na+ driven multidrug efflux pump
39	 40.13	0	64361..64669	+	102	19745240	rpsJ	spyM18_0049	-	30S ribosomal protein S10
40	 41.95	0	64917..65543	+	208	19745241	rplC	spyM18_0050	-	50S ribosomal protein L3
41	 42.63	+1	65567..66190	+	207	19745242	rplD	spyM18_0051	-	50S ribosomal protein L4
42	 37.71	0	66190..66486	+	98	19745243	rplW	spyM18_0052	-	50S ribosomal protein L23
43	 43.53	+1	66504..67337	+	277	19745244	rplB	spyM18_0053	-	50S ribosomal protein L2
44	 39.78	0	67476..67754	+	92	19745245	rpsS	spyM18_0054	-	30S ribosomal protein S19
45	 39.71	0	67770..68114	+	114	19745246	rplV	spyM18_0056	-	50S ribosomal protein L22
46	 41.28	0	68127..68780	+	217	19745247	rpsC	spyM18_0057	-	30S ribosomal protein S3
47	 43.24	+1	68784..69197	+	137	19745248	rplP	spyM18_0058	-	50S ribosomal protein L16
48	 35.27	0	69207..69413	+	68	19745249	rpmC	spyM18_0060	-	50S ribosomal protein L29
49	 38.31	0	69439..69699	+	86	19745250	rpsQ	spyM18_0061	-	30S ribosomal protein S17
50	 44.17	+1	69724..70092	+	122	19745251	rplN	spyM18_0062	-	50S ribosomal protein L14
51	 36.60	0	70171..70476	+	101	19745252	rplX	spyM18_0063	-	50S ribosomal protein L24
52	 40.52	0	70500..71042	+	180	19745253	rplE	spyM18_0064	-	50S ribosomal protein L5
53	 39.25	0	71058..71243	+	61	19745254	rpsN	spyM18_0065	-	30S ribosomal protein S14
54	 36.84	0	71394..71792	+	132	19745255	rpsH	spyM18_0066	-	30S ribosomal protein S8
55	 38.92	0	71995..72531	+	178	19745256	rplF	spyM18_0067	-	50S ribosomal protein L6
56	 45.94	+1	72636..72992	+	118	19745257	rplR	spyM18_0068	-	50S ribosomal protein L18
57	 42.42	+1	73011..73505	+	164	19745258	rpsE	spyM18_0069	-	30S ribosomal protein S5
58	 36.61	0	73520..73702	+	60	19745259	rpmD	spyM18_0071	-	50S ribosomal protein L30
59	 39.68	0	73917..74357	+	146	19745260	rplO	spyM18_0072	-	50S ribosomal protein L15
60	 36.48	0	74374..75678	+	434	19745261	secY	spyM18_0073	-	preprotein translocase subunit SecY
61	 39.44	0	75828..76466	+	212	19745262	adk	spyM18_0074	-	adenylate kinase
62	 36.53	0	76584..76802	+	72	19745263	infA	spyM18_0075	-	translation initiation factor IF-1
63	 37.61	0	76828..76944	+	38	19745264	rpmJ	spyM18_0076	-	50S ribosomal protein L36
64	 39.34	0	76962..77327	+	121	19745265	rpsM	spyM18_0077	-	30S ribosomal protein S13
65	 44.01	+1	77345..77728	+	127	19745266	rpsK	spyM18_0078	-	30S ribosomal protein S11
66	 38.13	0	77774..78712	+	312	19745267	rpoA	spyM18_0079	-	DNA-directed RNA polymerase subunit alpha
67	 40.57	0	78727..79113	+	128	19745268	rplQ	spyM18_0080	-	50S ribosomal protein L17
68	 41.94	0	86359..86544	+	61	19745270	-	spyM18_0085	-	hypothetical protein
69	 34.46	-1	87867..88310	+	147	19745271	adcR	spyM18_0092	-	putative repressor protein
70	 41.11	0	88314..89033	+	239	19745272	adrC	spyM18_0093	-	ABC transporter ATP-binding protein
71	 38.73	0	89026..89841	+	271	19745273	adrB	spyM18_0094	-	putative ABC transporter (permease)
72	 41.15	0	89881..90264	-	127	19745274	-	spyM18_0095	-	putative histidine triad (HIT) protein
73	 41.77	0	90320..91576	-	418	19745275	tyrS	spyM18_0096	-	tyrosyl-tRNA synthetase
74	 40.55	0	91680..93980	+	766	19745276	pbp	spyM18_0098	-	putative penicillin-binding protein 1b
75	 43.31	+1	94244..97810	+	1188	19745277	rpoB	spyM18_0099	-	DNA-directed RNA polymerase subunit beta
76	 43.99	+1	97901..101542	+	1213	19745278	ropC	spyM18_0100	-	DNA-directed RNA polymerase subunit beta'
77	 34.97	0	101694..102059	+	121	19745279	-	spyM18_0101	-	putative DNA binding protein
78	 37.49	0	102151..103089	+	312	19745280	-	spyM18_0102	-	putative ABC transporter subunit ComYA
79	 35.07	0	102968..104059	+	363	19745281	-	spyM18_0103	-	putative competence protein, ABC transporter subunit
80	 33.94	-1	104061..104387	+	108	19745282	-	spyM18_0105	-	putative competence protein
81	 34.27	-1	104362..104790	+	142	19745283	-	spyM18_0106	-	putative competence protein
82	 37.97	0	104795..105031	+	78	19745284	-	spyM18_0107	-	hypothetical protein
83	 35.86	0	105024..105458	+	144	19745285	-	spyM18_0108	-	putative competence protein
84	 35.47	0	105442..105768	+	108	19745286	-	spyM18_0109	-	hypothetical protein
85	 38.36	0	105866..106819	+	317	19745287	-	spyM18_0110	-	hypothetical protein
86	 38.76	0	106878..108074	+	398	19745288	-	spyM18_0111	-	acetate kinase
87	 35.92	0	108261..108569	+	102	19745289	-	spyM18_0112	-	hypothetical protein
88	 43.58	+1	108652..109422	-	256	19745290	-	spyM18_0113	-	pyrroline-5-carboxylate reductase
89	 45.04	+1	109470..110537	-	355	19745291	-	spyM18_0115	-	putative glutamyl-aminopeptidase
90	 42.61	+1	111073..112074	+	333	19745292	tra	spyM18_0116	-	putative transposase
91	 36.84	0	112088..112372	+	94	19745293	-	spyM18_0117	-	hypothetical protein
92	 35.10	0	112369..112707	+	112	19745294	trxA	spyM18_0118	-	putative thioredoxin
93	 42.58	+1	112704..113330	+	208	19745295	pheT1	spyM18_0119	-	hypothetical protein
94	 38.89	0	113482..113877	+	131	19745296	ssb	spyM18_0120	-	single-strand DNA-binding protein
95	 39.88	0	114132..114773	-	213	19745297	-	spyM18_0121	-	hypothetical protein
96	 45.91	+1	114793..115770	-	325	19745298	-	spyM18_0122	-	tRNA-dihydrouridine synthase
97	 42.27	0	115757..116629	-	290	19745299	hslO	spyM18_0123	-	Hsp33-like chaperonin
98	 31.65	-1	117637..118290	-	217	19745300	nra.1	spyM18_0125	-	N-terminal fragment of Nra
99	 35.94	0	118720..120294	+	524	19745301	cbp	spyM18_0126	-	putative collagen binding protein
100	 36.78	0	120287..120808	+	173	19745302	lepA	spyM18_0127	-	hypothetical protein
38.53	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.