IslandPath Analysis: Renibacterium salmoninarum ATCC 33209



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.28   STD DEV: 2.77
Renibacterium salmoninarum ATCC 33209, complete genome - 1..3155250
3507 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.14	-2	144..1547	+	467	163838770	dnaA	RSal33209_0001	-	chromosomal replication initiator protein
2	 53.55	0	1864..3090	+	408	163838771	-	RSal33209_0002	-	DNA polymerase III, beta chain
3	 53.90	0	3134..4018	+	294	163838772	-	RSal33209_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 52.63	-1	4020..5216	+	398	163838773	recF	RSal33209_0004	-	recombination protein F
5	 56.65	0	5197..5775	+	192	163838774	-	RSal33209_0005	-	hypothetical protein
6	 53.67	0	6034..8142	+	702	163838775	-	RSal33209_0006	-	DNA gyrase subunit B
7	 55.48	0	8221..10785	+	854	163838776	-	RSal33209_0007	-	DNA gyrase subunit A
8	 56.29	0	10772..11272	+	166	163838777	-	RSal33209_0008	-	hypothetical protein
9	 43.33	-2	11449..11568	+	39	163838778	-	RSal33209_0010	-	hypothetical protein
10	 54.43	0	11809..12282	+	157	163838779	-	RSal33209_0012	-	hypothetical protein
11	 51.75	-1	12718..13629	-	303	163838780	-	RSal33209_0013	-	glycosyltransferase
12	 56.81	0	13676..14821	-	381	163838781	-	RSal33209_0014	-	hypothetical protein
13	 54.88	0	14836..15378	+	180	163838782	-	RSal33209_0015	-	peptidyl-prolyl cis-trans isomerase B
14	 56.47	0	15391..16263	+	290	163838783	-	RSal33209_0016	-	rhomboid family membrane protein
15	 53.80	0	16450..17265	+	271	163838784	-	RSal33209_0017	-	hydrolase
16	 56.74	0	17276..18091	-	271	163838785	-	RSal33209_0018	-	glutamate racemase
17	 56.19	0	18113..18904	-	263	163838786	-	RSal33209_0019	-	epoxide hydrolase
18	 51.91	-1	19093..19695	+	200	163838787	-	RSal33209_0020	-	TetR family transcriptional regulator
19	 57.93	0	19692..20984	+	430	163838788	-	RSal33209_0021	-	hypothetical protein
20	 56.08	0	20981..22303	+	440	163838789	-	RSal33209_0022	-	FAD/FMN-containing dehydrogenase
21	 55.83	0	22292..23260	-	322	163838790	-	RSal33209_0023	-	esterase
22	 57.74	0	23319..23486	+	55	163838791	-	RSal33209_0024	-	hypothetical protein
23	 56.92	0	23483..24241	-	252	163838792	-	RSal33209_0025	-	secretory serine protease
24	 57.72	0	24638..24760	+	40	163838793	-	RSal33209_0026	-	hypothetical protein
25	 58.77	0	24766..26919	-	717	163838794	recQ	RSal33209_0027	-	ATP-dependent DNA helicase
26	 57.82	0	26953..28365	+	470	163838795	-	RSal33209_0028	-	phosphoglucomutase
27	 58.33	0	28415..30238	-	607	163838796	-	RSal33209_0029	-	phosphoenolpyruvate carboxykinase
28	 60.66	+1	30514..31146	+	210	163838797	-	RSal33209_0030	-	gamma-glutamyltranspeptidase
29	 47.97	-2	31185..31307	+	40	163838798	-	RSal33209_0031	-	gamma-glutamyltranspeptidase
30	 56.80	0	31300..32373	+	357	163838799	-	RSal33209_0032	-	gamma-glutamyltranspeptidase
31	 57.26	0	32749..32865	-	38	163838800	-	RSal33209_0034	-	putative xylanase
32	 55.48	0	32975..34243	-	422	163838801	-	RSal33209_0035	-	hypothetical protein
33	 55.33	0	34380..34829	-	149	163838802	-	RSal33209_0036	-	hypothetical protein
34	 58.22	0	34994..36685	-	563	163838803	-	RSal33209_0037	-	beta-galactosidase
35	 56.43	0	36710..38038	-	442	163838804	-	RSal33209_0038	-	beta-galactosidase
36	 58.70	0	38194..39624	+	476	163838805	-	RSal33209_0039	-	mercuric reductase
37	 54.17	0	39621..39836	-	71	163838806	-	RSal33209_0040	-	hypothetical protein
38	 56.99	0	40064..40156	-	30	163838807	-	RSal33209_0041	-	hypothetical protein
39	 60.03	+1	40259..40966	+	235	163838808	-	RSal33209_0042	-	hypothetical protein
40	 56.33	0	40963..42984	+	673	163838809	-	RSal33209_0043	-	phage infection protein
41	 56.67	0	43056..43595	+	179	163838810	-	RSal33209_0044	-	TetR family transcriptional regulator
42	 56.27	0	43571..44503	-	310	163838811	-	RSal33209_0045	-	putative permease
43	 57.41	0	44576..45472	+	298	163838812	-	RSal33209_0046	-	LysR family transcriptional regulator
44	 57.25	0	45486..46016	-	176	163838813	sixA	RSal33209_0047	-	phosphohistidine phosphatase
45	 59.88	+1	46041..46718	-	225	163838814	-	RSal33209_0048	-	two-component response regulator
46	 54.29	0	46733..46837	+	34	163838815	-	RSal33209_0049	-	hypothetical protein
47	 56.59	0	47551..48294	+	247	163838816	-	RSal33209_0050	-	two-component response regulator
48	 54.83	0	48291..49937	+	548	163838817	-	RSal33209_0051	-	putative two component sensor kinase
49	 58.06	0	49960..50703	-	247	163838818	-	RSal33209_0052	-	hypothetical protein
50	 55.28	0	50776..51504	-	242	163838819	-	RSal33209_0053	-	macrolide-efflux protein
51	 56.35	0	51501..52004	-	167	163838820	-	RSal33209_0054	-	macrolide-efflux protein
52	 54.36	0	52001..52447	-	148	163838821	-	RSal33209_0055	-	MarR family transcriptional regulator
53	 61.48	+1	52587..53435	+	282	163838822	-	RSal33209_0056	-	transglycosylase
54	 54.99	0	53513..54283	-	256	163838823	-	RSal33209_0057	-	hypothetical protein
55	 57.08	0	54340..54975	-	211	163838824	-	RSal33209_0058	-	uracil phosphoribosyltransferase
56	 62.35	+2	54998..55483	+	161	163838825	-	RSal33209_0059	-	tRNA-specific adenosine deaminase
57	 52.78	-1	55488..55883	+	131	163838826	-	RSal33209_0060	-	hypothetical protein
58	 60.40	+1	55880..56278	-	132	163838827	-	RSal33209_0061	-	AraC family transcriptional regulator
59	 59.19	+1	56323..56790	-	155	163838828	-	RSal33209_0062	-	AraC family transcriptional regulator
60	 52.75	-1	56812..57393	-	193	163838829	-	RSal33209_0063	-	isochorismatase family protein
61	 57.99	0	57478..58503	-	341	163838830	-	RSal33209_0064	-	hypothetical protein
62	 58.48	0	58871..59383	-	170	163838831	-	RSal33209_0066	-	hypothetical protein
63	 50.71	-2	59380..59799	-	139	163838832	-	RSal33209_0067	-	ArsR family transcriptional regulator
64	 53.57	0	59814..60233	+	139	163838833	-	RSal33209_0068	-	glyoxalase family protein
65	 63.77	+2	60311..60448	-	45	163838834	-	RSal33209_0069	-	hypothetical protein
66	 57.14	0	60476..60958	+	160	163838835	-	RSal33209_0070	-	hypothetical protein
67	 58.37	0	61023..61745	+	240	163838836	-	RSal33209_0071	-	hypothetical protein
68	 60.55	+1	61824..62150	-	108	163838837	-	RSal33209_0072	-	hypothetical protein
69	 55.21	0	62347..63027	-	226	163838838	-	RSal33209_0073	-	hypothetical protein
70	 58.14	0	63045..65951	+	968	163838839	-	RSal33209_0074	-	ATP-dependent helicase
71	 60.41	+1	66128..67357	+	409	163838840	-	RSal33209_0075	-	ATP-dependent helicase
72	 56.89	0	67354..67752	+	132	163838841	-	RSal33209_0076	-	ATP-dependent helicase
73	 53.76	0	67949..68041	-	30	163838842	-	RSal33209_0077	-	hypothetical protein
74	 55.20	0	68054..68620	+	188	163838843	-	RSal33209_0078	-	formamidopyrimidine-DNA glycosylase
75	 55.41	0	68630..69544	+	304	163838844	-	RSal33209_0079	-	ribosomal pseudouridine synthase
76	 56.96	0	69570..69878	-	102	163838845	-	RSal33209_0080	-	hypothetical protein
77	 57.55	0	69952..70719	+	255	163838846	-	RSal33209_0081	-	hypothetical protein
78	 55.19	0	70716..71543	-	275	163838847	-	RSal33209_0082	-	3-oxoacyl-[acyl-carrier-protein] synthase III
79	 50.83	-1	71578..71697	-	39	163838848	-	RSal33209_0083	-	3-oxoacyl-[acyl-carrier-protein] synthase III
80	 53.61	0	71748..72911	-	387	163838849	-	RSal33209_0084	-	glutaryl-CoA dehydrogenase
81	 59.70	+1	72908..73711	-	267	163838850	-	RSal33209_0085	-	3-oxoacyl-[acyl-carrier protein] reductase
82	 59.79	+1	73817..74005	+	62	163838851	-	RSal33209_0086	-	hypothetical protein
83	 57.82	0	73990..74916	+	308	163838852	-	RSal33209_0087	-	glycosyl hydrolase
84	 55.67	0	75601..76200	-	199	163838853	-	RSal33209_0088	-	hypothetical protein
85	 54.64	0	76240..76929	-	229	163838854	-	RSal33209_0089	-	glycerophosphoryl diester phosphodiesterase
86	 59.03	0	77076..77507	-	143	163838855	-	RSal33209_0090	-	HAD superfamily hydrolase
87	 55.56	0	77526..77885	-	119	163838856	-	RSal33209_0091	-	HAD superfamily hydrolase
88	 56.25	0	77890..79224	-	444	163838857	-	RSal33209_0092	-	spectinomycin-efflux protein
89	 59.13	+1	79247..79777	-	176	163838858	-	RSal33209_0093	-	putative phospholipid-binding protein
90	 57.25	0	79781..80704	-	307	163838859	-	RSal33209_0094	-	fructokinase
91	 55.56	0	80743..81210	+	155	163838860	-	RSal33209_0095	-	4-carboxymuconolactone decarboxylase
92	 55.94	0	81335..82294	-	319	163838861	-	RSal33209_0096	-	proline iminopeptidase
93	 57.81	0	82334..82807	+	157	163838862	-	RSal33209_0097	-	hypothetical protein
94	 53.28	-1	82823..83218	-	131	163838863	-	RSal33209_0098	-	fosfomycin resistance protein
95	 45.93	-2	83300..83569	+	89	163838864	relB	RSal33209_0099	-	RelB
96	 47.51	-2	83566..83826	+	86	163838865	relE	RSal33209_0100	-	hypothetical protein
97	 59.06	+1	83823..84650	-	275	163838866	-	RSal33209_0101	-	lipase/esterase
98	 50.35	-2	84706..84993	+	95	163838867	-	RSal33209_0102	-	hypothetical protein
99	 56.20	0	85049..86137	+	362	163838868	-	RSal33209_0103	-	GTP pyrophosphokinase
100	 60.73	+1	86205..86726	-	173	163838869	-	RSal33209_0104	-	subtilisin-like protease
56.28	MEAN

2.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.