IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.95   STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.36	0	816..1151	+	111	159904397	-	MmarC6_0001	-	hypothetical protein
2	 34.41	0	1153..3099	+	648	159904398	-	MmarC6_0002	-	hypothetical protein
3	 37.22	0	3096..5126	+	676	159904399	-	MmarC6_0003	-	hypothetical protein
4	 38.37	+1	5155..5670	+	171	159904400	-	MmarC6_0004	-	hypothetical protein
5	 35.22	0	5697..6014	+	105	159904401	-	MmarC6_0005	-	hypothetical protein
6	 36.75	0	6379..7110	+	243	159904402	-	MmarC6_0006	-	hypothetical protein
7	 40.62	+1	7122..7601	+	159	159904403	-	MmarC6_0007	-	hypothetical protein
8	 31.75	0	7607..8047	+	146	159904404	-	MmarC6_0008	-	hypothetical protein
9	 33.33	0	8189..8728	+	179	159904405	-	MmarC6_0009	-	hypothetical protein
10	 32.52	0	8847..10199	+	450	159904406	-	MmarC6_0010	-	AAA family ATPase
11	 33.60	0	10209..10964	+	251	159904407	-	MmarC6_0011	-	hypothetical protein
12	 30.12	-1	10975..11316	+	113	159904408	-	MmarC6_0012	-	hypothetical protein
13	 30.31	0	11313..12074	-	253	159904409	-	MmarC6_0013	-	extracellular solute-binding protein
14	 32.61	0	12372..12926	+	184	159904410	-	MmarC6_0014	-	resolvase domain-containing protein
15	 31.55	0	12936..14903	-	655	159904411	-	MmarC6_0015	-	helicase c2
16	 34.29	0	15107..16360	+	417	159904412	-	MmarC6_0016	-	cytosine permease
17	 35.73	0	16363..16737	-	124	159904413	-	MmarC6_0017	-	hypothetical protein
18	 33.33	0	16907..17134	+	75	159904414	-	MmarC6_0018	-	hypothetical protein
19	 31.30	0	17243..18226	+	327	159904415	-	MmarC6_0019	-	DNA methylase N-4/N-6 domain-containing protein
20	 25.67	-2	18289..18549	-	86	159904416	-	MmarC6_0020	-	hypothetical protein
21	 29.56	-1	18590..20101	-	503	159904417	-	MmarC6_0021	-	hypothetical protein
22	 27.06	-1	20421..21344	-	307	159904418	-	MmarC6_0022	-	hypothetical protein
23	 31.59	0	21354..22673	-	439	159904419	-	MmarC6_0023	-	hypothetical protein
24	 25.33	-2	23099..23398	-	99	159904420	-	MmarC6_0024	-	hypothetical protein
25	 28.06	-1	23447..24262	-	271	159904421	-	MmarC6_0025	-	hypothetical protein
26	 27.08	-1	24725..25012	-	95	159904422	-	MmarC6_0026	-	ArsR family transcriptional regulator
27	 36.36	0	25191..25388	+	65	159904423	-	MmarC6_0027	-	hypothetical protein
28	 32.76	0	25496..25669	+	57	159904424	-	MmarC6_0028	-	hypothetical protein
29	 35.79	0	25738..26226	+	162	159904425	-	MmarC6_0029	-	hypothetical protein
30	 37.62	0	26247..28253	+	668	159904426	-	MmarC6_0030	-	MCM family protein
31	 31.30	0	28263..28607	+	114	159904427	-	MmarC6_0031	-	hypothetical protein
32	 29.00	-1	28821..29051	+	76	159904428	-	MmarC6_0032	-	hypothetical protein
33	 34.62	0	29385..29540	+	51	159904429	-	MmarC6_0033	-	hypothetical protein
34	 25.16	-2	29552..29710	+	52	159904430	-	MmarC6_0034	-	hypothetical protein
35	 36.02	0	29713..29973	+	86	159904431	-	MmarC6_0035	-	hypothetical protein
36	 32.62	0	29983..30957	+	324	159904432	-	MmarC6_0036	-	integrase family protein
37	 29.35	-1	31253..32431	+	392	159904433	-	MmarC6_0037	-	filamentation induced by cAMP protein Fic
38	 31.97	0	32615..33493	+	292	159904434	-	MmarC6_0038	-	hypothetical protein
39	 36.79	0	33812..35317	+	501	159904435	-	MmarC6_0039	-	N-6 DNA methylase
40	 36.59	0	35335..38433	+	1032	159904436	-	MmarC6_0040	-	HsdR family type I site-specific deoxyribonuclease
41	 31.32	0	38452..39645	+	397	159904437	-	MmarC6_0041	-	restriction modification system DNA specificity subunit
42	 30.11	-1	39655..39933	-	92	159904438	-	MmarC6_0042	-	hypothetical protein
43	 33.62	0	39935..40285	-	116	159904439	-	MmarC6_0043	-	hypothetical protein
44	 32.56	0	40895..41410	+	171	159904440	-	MmarC6_0044	-	hypothetical protein
45	 38.62	+1	41416..41604	+	62	159904441	-	MmarC6_0045	-	hypothetical protein
46	 34.65	0	41606..41833	+	75	159904442	-	MmarC6_0046	-	hypothetical protein
47	 32.04	0	41846..42232	+	128	159904443	-	MmarC6_0047	-	hypothetical protein
48	 28.57	-1	42406..43707	+	433	159904444	-	MmarC6_0048	-	hypothetical protein
49	 30.58	0	43707..44324	+	205	159904445	-	MmarC6_0049	-	hypothetical protein
50	 33.33	0	44434..44835	+	133	159904446	-	MmarC6_0050	-	HI0074 family nucleotidyltransferase substrate binding protein
51	 26.87	-1	44832..45125	+	97	159904447	-	MmarC6_0051	-	DNA polymerase beta subunit
52	 26.14	-2	45223..45528	+	101	159904448	-	MmarC6_0052	-	DNA polymerase beta subunit
53	 24.27	-2	45555..45863	+	102	159904449	-	MmarC6_0053	-	DNA polymerase beta subunit
54	 34.21	0	46103..46783	+	226	159904450	-	MmarC6_0054	-	putative transcriptional regulator
55	 29.81	-1	46907..48211	-	434	159904451	-	MmarC6_0055	-	filamentation induced by cAMP protein Fic
56	 35.16	0	48858..49403	+	181	159904452	-	MmarC6_0056	-	hypothetical protein
57	 36.76	0	49799..50119	+	106	159904453	-	MmarC6_0057	-	hypothetical protein
58	 39.71	+1	50779..50982	+	67	159904454	-	MmarC6_0058	-	hypothetical protein
59	 39.52	+1	50994..51203	+	69	159904455	-	MmarC6_0059	-	hypothetical protein
60	 37.53	0	51200..51937	+	245	159904456	-	MmarC6_0060	-	hypothetical protein
61	 37.94	+1	51947..52228	+	93	159904457	-	MmarC6_0061	-	hypothetical protein
62	 35.32	0	52331..52582	+	83	159904458	-	MmarC6_0062	-	hypothetical protein
63	 38.96	+1	52768..53211	+	147	159904459	-	MmarC6_0063	-	hypothetical protein
64	 32.20	0	53216..53392	+	58	159904460	-	MmarC6_0064	-	hypothetical protein
65	 35.71	0	53395..53730	+	111	159904461	-	MmarC6_0065	-	hypothetical protein
66	 37.18	0	53846..54079	+	77	159904462	-	MmarC6_0066	-	hypothetical protein
67	 33.93	0	54242..54574	+	110	159904463	-	MmarC6_0067	-	hypothetical protein
68	 36.15	0	54588..55049	+	153	159904464	-	MmarC6_0068	-	hypothetical protein
69	 31.91	0	55074..55355	+	93	159904465	-	MmarC6_0069	-	hypothetical protein
70	 32.03	0	56411..56641	+	76	159904466	-	MmarC6_0072	-	hypothetical protein
71	 26.17	-2	56632..58362	+	576	159904467	-	MmarC6_0073	-	hypothetical protein
72	 29.28	-1	58405..59466	-	353	159904468	-	MmarC6_0074	-	hypothetical protein
73	 29.05	-1	59547..59990	+	147	159904469	-	MmarC6_0075	-	hypothetical protein
74	 35.04	0	60009..60476	+	155	159904470	-	MmarC6_0076	-	hypothetical protein
75	 39.11	+1	60490..62064	-	524	159904471	-	MmarC6_0077	-	hypothetical protein
76	 37.49	0	62065..63123	-	352	159904472	-	MmarC6_0078	-	hypothetical protein
77	 43.15	+2	63129..66092	-	987	159904473	-	MmarC6_0079	-	TP901 family phage tail tape measure protein
78	 38.53	+1	66101..67774	-	557	159904474	-	MmarC6_0080	-	hypothetical protein
79	 38.82	+1	67944..68453	-	169	159904475	-	MmarC6_0081	-	hypothetical protein
80	 37.80	+1	68486..69358	-	290	159904476	-	MmarC6_0082	-	hypothetical protein
81	 44.88	+2	69358..69660	-	100	159904477	-	MmarC6_0083	-	hypothetical protein
82	 37.09	0	69660..70058	-	132	159904478	-	MmarC6_0084	-	hypothetical protein
83	 41.73	+2	70060..70440	-	126	159904479	-	MmarC6_0085	-	hypothetical protein
84	 37.56	0	70449..71252	-	267	159904480	-	MmarC6_0086	-	hypothetical protein
85	 43.98	+2	71263..71619	-	118	159904481	-	MmarC6_0087	-	hypothetical protein
86	 37.29	0	71630..72109	-	159	159904482	-	MmarC6_0088	-	hypothetical protein
87	 42.52	+2	72123..72797	-	224	159904483	-	MmarC6_0089	-	hypothetical protein
88	 37.04	0	72880..73122	-	80	159904484	-	MmarC6_0090	-	hypothetical protein
89	 39.86	+1	73545..73988	+	147	159904485	-	MmarC6_0091	-	hypothetical protein
90	 35.49	0	74010..74333	+	107	159904486	-	MmarC6_0092	-	hypothetical protein
91	 33.94	0	74343..74507	+	54	159904487	-	MmarC6_0093	-	hypothetical protein
92	 40.76	+1	74516..75229	+	237	159904488	-	MmarC6_0094	-	hypothetical protein
93	 42.57	+2	75226..75474	+	82	159904489	-	MmarC6_0095	-	hypothetical protein
94	 39.00	+1	75485..77002	+	505	159904490	-	MmarC6_0096	-	hypothetical protein
95	 38.71	+1	77015..79024	+	669	159904491	-	MmarC6_0097	-	hypothetical protein
96	 42.19	+2	79028..79501	+	157	159904492	-	MmarC6_0098	-	hypothetical protein
97	 33.46	0	79635..80453	+	272	159904493	-	MmarC6_0099	-	hypothetical protein
98	 31.37	0	80581..80988	-	135	159904494	-	MmarC6_0100	-	hypothetical protein
99	 33.33	0	80989..81474	-	161	159904495	-	MmarC6_0101	-	putative prophage protein (ps3)
100	 30.53	0	81771..82055	-	94	159904496	-	MmarC6_0102	-	hypothetical protein
33.95	MEAN

3.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.