IslandPath Analysis: Shewanella sp. W3-18-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.00   STD DEV: 3.71
Shewanella sp. W3-18-1, complete genome - 1..4708380
4044 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.36	0	150..1535	+	461	120596834	dnaA	Sputw3181_0001	-	chromosomal replication initiation protein
2	 42.42	0	1556..2656	+	366	120596835	-	Sputw3181_0002	-	DNA polymerase III, beta subunit
3	 44.51	0	2853..3935	+	360	120596836	-	Sputw3181_0003	-	DNA replication and repair protein RecF
4	 45.91	0	3952..6369	+	805	120596837	-	Sputw3181_0004	-	DNA gyrase, B subunit
5	 42.98	0	6571..7617	+	348	120596838	-	Sputw3181_0005	-	putative signal transduction protein
6	 48.02	0	7705..9774	-	689	120596839	glyS	Sputw3181_0006	-	glycyl-tRNA synthetase subunit beta
7	 48.90	+1	9785..10690	-	301	120596840	glyQ	Sputw3181_0007	-	glycyl-tRNA synthetase subunit alpha
8	 45.11	0	10808..11410	+	200	120596841	-	Sputw3181_0008	-	DNA-3-methyladenine glycosylase I
9	 46.32	0	11528..14716	-	1062	120596842	-	Sputw3181_0009	-	amidohydrolase
10	 45.92	0	14938..15390	-	150	120596843	-	Sputw3181_0010	-	hypothetical protein
11	 46.75	0	15435..15680	-	81	120596844	-	Sputw3181_0011	-	SirA family protein
12	 49.74	+1	15911..17074	-	387	120596845	fadA	Sputw3181_0012	-	3-ketoacyl-CoA thiolase
13	 47.70	0	17097..19247	-	716	120596846	fadB	Sputw3181_0013	-	multifunctional fatty acid oxidation complex subunit alpha
14	 47.47	0	19738..21060	+	440	120596847	-	Sputw3181_0014	-	proline dipeptidase
15	 43.74	0	21088..21702	+	204	120596848	-	Sputw3181_0015	-	hypothetical protein
16	 43.83	0	21780..23237	+	485	120596849	-	Sputw3181_0016	-	TrkH family potassium uptake protein
17	 40.19	-1	23240..23764	+	174	120596850	-	Sputw3181_0017	-	protoporphyrinogen oxidase
18	 41.10	-1	23815..24123	-	102	120596851	-	Sputw3181_0018	-	regulatory protein, ArsR
19	 41.98	0	24326..24880	+	184	120596852	-	Sputw3181_0019	-	protoporphyrinogen oxidase
20	 42.97	0	24920..26362	-	480	120596853	-	Sputw3181_0020	-	TrkH family potassium uptake protein
21	 46.03	0	26383..27792	-	469	120596854	trkA	Sputw3181_0021	-	potassium transporter peripheral membrane component
22	 49.38	+1	27808..29097	-	429	120596855	-	Sputw3181_0022	-	sun protein
23	 48.59	0	29100..30056	-	318	120596856	-	Sputw3181_0023	-	methionyl-tRNA formyltransferase
24	 40.55	-1	30066..30578	-	170	120596857	-	Sputw3181_0024	-	peptide deformylase
25	 41.78	0	30704..31828	+	374	120596858	-	Sputw3181_0025	-	peptidoglycan-binding LysM
26	 45.36	0	31907..32929	+	340	120596859	-	Sputw3181_0026	-	DNA protecting protein DprA
27	 39.87	-1	32932..33405	+	157	120596860	-	Sputw3181_0027	-	hypothetical protein
28	 44.21	0	33519..34088	+	189	120596861	-	Sputw3181_0028	-	DNA topoisomerase type IA Zn finger domain-containing protein
29	 47.44	0	34236..34802	+	188	120596862	-	Sputw3181_0029	-	Sua5/YciO/YrdC/YwlC family protein
30	 50.61	+1	34828..35736	+	302	120596863	-	Sputw3181_0030	-	coproporphyrinogen III oxidase
31	 46.12	0	35771..36208	-	145	120596864	-	Sputw3181_0031	-	globin
32	 49.71	+1	36350..37198	+	282	120596865	-	Sputw3181_0032	-	shikimate 5-dehydrogenase
33	 47.10	0	37204..37479	+	91	120596866	-	Sputw3181_0033	-	hypothetical protein
34	 46.08	0	37613..38161	-	182	120596867	-	Sputw3181_0034	-	carbonic anhydrase
35	 40.64	-1	44067..46517	+	816	120596868	-	Sputw3181_0035	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
36	 45.53	0	46474..47457	-	327	120596869	-	Sputw3181_0036	-	alpha/beta hydrolase fold
37	 45.81	0	47553..49364	-	603	120596870	-	Sputw3181_0037	-	hypothetical protein
38	 46.59	0	49575..50570	+	331	120596871	-	Sputw3181_0038	-	adenosine deaminase
39	 43.62	0	50667..52007	-	446	120596872	-	Sputw3181_0039	-	coproporphyrinogen III oxidase
40	 42.74	0	52292..52759	-	155	120596873	-	Sputw3181_0040	-	hypothetical protein
41	 42.75	0	52829..53380	-	183	120596874	-	Sputw3181_0041	-	hypothetical protein
42	 40.38	-1	53471..54109	-	212	120596875	-	Sputw3181_0042	-	hypothetical protein
43	 43.43	0	54928..55551	-	207	120596876	-	Sputw3181_0043	-	cytochrome c, class I
44	 43.94	0	55721..56380	+	219	120596877	-	Sputw3181_0044	-	GTPase EngB
45	 47.17	0	57192..59960	-	922	120596878	-	Sputw3181_0045	-	DNA polymerase I
46	 46.30	0	60347..61009	+	220	120596879	-	Sputw3181_0046	-	isoprenoid biosynthesis protein
47	 47.16	0	61096..61941	-	281	120596880	-	Sputw3181_0047	-	rhomboid family protein
48	 44.77	0	61938..62243	-	101	120596881	-	Sputw3181_0048	-	rhodanese domain-containing protein
49	 48.83	+1	62354..63379	-	341	120596882	tdh	Sputw3181_0049	-	L-threonine 3-dehydrogenase
50	 49.75	+1	63391..64584	-	397	120596883	-	Sputw3181_0050	-	2-amino-3-ketobutyrate coenzyme A ligase
51	 44.29	0	64872..65519	-	215	120596884	-	Sputw3181_0051	-	TetR family transcriptional regulator
52	 49.29	+1	65662..66927	+	421	120596885	-	Sputw3181_0052	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
53	 47.14	0	66978..67730	-	250	120596886	-	Sputw3181_0053	-	3-deoxy-D-manno-octulosonic-acid kinase
54	 46.46	0	67829..68872	+	347	120596887	-	Sputw3181_0054	-	glycosyl transferase family protein
55	 41.44	0	68961..70046	+	361	120596888	-	Sputw3181_0055	-	glycosyl transferase, group 1
56	 43.06	0	70077..71156	+	359	120596889	-	Sputw3181_0056	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
57	 31.77	-2	71321..72280	+	319	120596890	-	Sputw3181_0057	-	glycosyl transferase family protein
58	 42.46	0	72561..73634	-	357	120596891	-	Sputw3181_0058	-	glycosyl transferase, group 1
59	 40.07	-1	74334..76175	-	613	120596892	-	Sputw3181_0059	-	sulfatase
60	 45.33	0	76556..77047	+	163	120596893	coaD	Sputw3181_0060	-	phosphopantetheine adenylyltransferase
61	 45.46	0	77138..78613	+	491	120596894	-	Sputw3181_0061	-	hypothetical protein
62	 45.73	0	78679..79686	-	335	120596895	-	Sputw3181_0062	-	NAD-dependent epimerase/dehydratase
63	 43.38	0	79710..80873	-	387	120596896	-	Sputw3181_0063	-	UDP-glucose/GDP-mannose dehydrogenase
64	 50.82	+1	81108..81839	+	243	120596897	-	Sputw3181_0064	-	glycosyl transferase family protein
65	 46.10	0	81841..82506	+	221	120596898	-	Sputw3181_0065	-	hypothetical protein
66	 49.04	+1	82516..84240	+	574	120596899	-	Sputw3181_0066	-	glycosyl transferase family protein
67	 50.12	+1	84303..85118	-	271	120596900	-	Sputw3181_0067	-	formamidopyrimidine-DNA glycosylase
68	 47.37	0	85154..85609	-	151	120596901	-	Sputw3181_0068	-	hypothetical protein
69	 47.15	0	85700..86683	-	327	120596902	-	Sputw3181_0069	-	molybdenum cofactor biosynthesis protein A
70	 51.21	+1	86700..88511	-	603	120596903	-	Sputw3181_0070	-	molybdopterin-guanine dinucleotide biosynthesis protein B
71	 46.70	0	88548..89138	-	196	120596904	-	Sputw3181_0071	-	molybdopterin-guanine dinucleotide biosynthesis protein A
72	 48.66	0	89122..89832	-	236	120596905	-	Sputw3181_0072	-	ABC transporter related
73	 50.85	+1	89836..90543	-	235	120596906	-	Sputw3181_0073	-	binding-protein-dependent transport systems inner membrane component
74	 43.39	0	90540..91364	-	274	120596907	-	Sputw3181_0074	-	extracellular solute-binding protein
75	 46.96	0	91602..93032	+	476	120596908	-	Sputw3181_0075	-	two component, sigma54 specific, Fis family transcriptional regulator
76	 44.02	0	93034..95157	+	707	120596909	-	Sputw3181_0076	-	integral membrane sensor signal transduction histidine kinase
77	 39.22	-1	95384..95842	-	152	120596910	-	Sputw3181_0077	-	acetyltransferase
78	 44.39	0	95942..96601	-	219	120596911	-	Sputw3181_0078	-	hypothetical protein
79	 42.59	0	96843..97577	+	244	120596912	-	Sputw3181_0079	-	hypothetical protein
80	 45.99	0	97611..98969	-	452	120596913	-	Sputw3181_0080	-	isochorismate synthase
81	 45.58	0	99594..100940	+	448	120596914	-	Sputw3181_0081	-	ABC transporter related
82	 41.65	0	101205..102395	+	396	120596915	-	Sputw3181_0082	-	metal dependent phosphohydrolase
83	 46.31	0	102500..103123	+	207	120596916	-	Sputw3181_0083	-	paraquat-inducible protein A
84	 50.34	+1	103372..103518	+	48	120596917	-	Sputw3181_0084	-	hypothetical protein
85	 47.42	0	103539..104489	-	316	120596918	-	Sputw3181_0085	-	hypothetical protein
86	 46.10	0	104777..105340	-	187	120596919	-	Sputw3181_0086	-	malate synthase
87	 47.19	0	105594..107123	+	509	120596920	-	Sputw3181_0087	-	XRE family transcriptional regulator
88	 66.11	+2	107492..108394	+	300	120596921	-	Sputw3181_0088	-	homocysteine S-methyltransferase
89	 62.37	+2	108404..109801	+	465	120596922	-	Sputw3181_0089	-	amino acid permease-associated region
90	 44.37	0	110012..112213	+	733	120596923	-	Sputw3181_0090	-	TonB-dependent siderophore receptor
91	 49.16	+1	112352..113299	-	315	120596924	-	Sputw3181_0091	-	protoheme IX farnesyltransferase
92	 46.20	0	113313..113654	-	113	120596925	-	Sputw3181_0092	-	cytochrome C oxidase subunit IV
93	 48.47	0	113654..114274	-	206	120596926	-	Sputw3181_0093	-	cytochrome c oxidase, subunit III
94	 48.89	+1	114276..116255	-	659	120596927	-	Sputw3181_0094	-	cytochrome-c oxidase
95	 49.77	+1	116258..117334	-	358	120596928	-	Sputw3181_0095	-	ubiquinol oxidase, subunit II
96	 39.74	-1	117524..117913	-	129	120596929	-	Sputw3181_0096	-	hypothetical protein
97	 44.12	0	118314..121964	+	1216	120596930	-	Sputw3181_0097	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s)
98	 45.70	0	122043..122519	+	158	120596931	-	Sputw3181_0098	-	hypothetical protein
99	 47.11	0	122585..124057	-	490	120596932	-	Sputw3181_0099	-	hypothetical protein
100	 44.25	0	124197..125561	-	454	120596933	-	Sputw3181_0100	-	integral membrane sensor signal transduction histidine kinase
45.00	MEAN

3.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.