IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.34	-1	1..1434	+	477	148271179	dnaA	CMM_0001	-	chromosomal replication initiator protein dnaA
2	 68.58	-1	1978..3129	+	383	148271180	dnaN	CMM_0002	-	DNA polymerase III subunit beta
3	 69.48	0	3150..4037	+	295	148271181	gndA1	CMM_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 72.59	0	4045..5259	+	404	148271182	recF	CMM_0004	-	recombination protein F
5	 71.93	0	5256..5768	+	170	148271183	-	CMM_0005	-	hypothetical protein
6	 67.25	-1	5958..8003	+	681	148271184	gyrB	CMM_0006	-	DNA gyrase subunit B
7	 68.68	-1	8086..10773	+	895	148271185	gyrA	CMM_0007	-	DNA gyrase subunit A
8	 64.46	-2	10766..11173	+	135	148271186	-	CMM_0008	-	putative integral membrane protein
9	 70.58	0	11620..12258	-	212	148271187	-	CMM_0009	-	hypothetical protein
10	 66.67	-1	12368..12907	+	179	148271188	ppiA	CMM_0010	-	peptidyl-prolyl cis-trans isomerase
11	 70.60	0	12907..13770	+	287	148271189	-	CMM_0011	-	hypothetical protein
12	 64.17	-2	14163..14402	-	79	148271190	-	CMM_0012	-	hypothetical protein
13	 70.91	0	14508..15308	+	266	148271191	-	CMM_0013	-	putative sortase
14	 70.42	0	15466..16104	+	212	148271192	pabA	CMM_0014	-	para-aminobenzoate synthetase component II
15	 72.56	0	16218..17966	-	582	148271193	pknB	CMM_0015	-	hypothetical protein
16	 73.48	0	18101..20008	-	635	148271194	pknA	CMM_0016	-	hypothetical protein
17	 69.56	0	20005..21456	-	483	148271195	pbpA	CMM_0017	-	penicillin-binding protein
18	 69.89	0	21453..22850	-	465	148271196	ftsW1	CMM_0018	-	putative cell division membrane protein
19	 72.45	0	22843..24105	-	420	148271197	-	CMM_0019	-	putative serine/threonine protein phosphatase
20	 72.31	0	24110..24694	-	194	148271198	-	CMM_0020	-	hypothetical protein
21	 72.81	0	24691..25422	-	243	148271199	-	CMM_0021	-	hypothetical protein
22	 77.51	+1	25879..28146	+	755	148271200	-	CMM_0022	-	hypothetical protein
23	 75.40	0	28143..28829	+	228	148271201	-	CMM_0023	-	putative two-component system response regulator
24	 77.21	+1	28837..29955	+	372	148271202	-	CMM_0024	-	putative two-component system sensor kinase
25	 65.04	-1	29995..30117	-	40	148271203	rpmJ	CMM_0025	-	50S ribosomal protein L36
26	 77.28	+1	30162..31235	+	357	148271204	-	CMM_0026	-	hypothetical protein
27	 74.70	0	31412..33178	+	588	148271205	recQ1	CMM_0027	-	ATP-dependent DNA helicase
28	 73.98	0	33175..33420	+	81	148271206	-	CMM_0028	-	hypothetical protein
29	 75.36	0	33677..34654	+	325	148271207	glsA	CMM_0029	-	putative glutaminase
30	 75.71	0	34674..35723	-	349	148271208	-	CMM_0030	-	putative hydrolase/acyltransferase
31	 77.00	+1	35841..36227	+	128	148271209	-	CMM_0031	-	hypothetical protein
32	 78.29	+1	36305..37552	+	415	148271210	-	CMM_0032	-	hypothetical protein
33	 74.10	0	37569..37958	-	129	148271211	-	CMM_0033	-	hypothetical protein
34	 71.62	0	40054..40860	+	268	148271212	-	CMM_0034	-	putative sugar phosphate isomerase/epimerase
35	 73.87	0	40857..41966	+	369	148271213	-	CMM_0035	-	putative dehydrogenase/oxidoreductase
36	 62.06	-2	42124..43209	+	361	148271214	-	CMM_0036	-	LacI family transcriptional regulator
37	 62.83	-2	45327..45899	-	190	148271215	-	CMM_0037	-	hypothetical protein
38	 70.05	0	47879..48292	-	137	148271216	-	CMM_0038	-	hypothetical protein
39	 61.39	-2	48734..49567	-	277	148271217	chpE	CMM_0039	-	serine protease
40	 71.52	0	49775..50104	-	109	148271218	-	CMM_0040	-	hypothetical protein
41	 57.19	-2	50376..51356	+	326	148271219	ppaA	CMM_0041	-	putative extracellular serine protease
42	 66.77	-1	51503..52507	-	334	148271220	ppaB1	CMM_0042	-	putative extracellular serine protease
43	 65.73	-1	52708..53559	+	283	148271221	pelA1	CMM_0043	-	hypothetical protein
44	 63.81	-2	53883..54896	-	337	148271222	ppaC	CMM_0044	-	putative extracellular serine protease
45	 62.71	-2	57043..57396	-	117	148271223	-	CMM_0045	-	hypothetical protein
46	 63.09	-2	61909..62718	+	269	148271224	-	CMM_0046	-	putative phage protein
47	 71.87	0	63422..63748	-	108	148271225	-	CMM_0047	-	hypothetical protein
48	 73.06	0	64558..64995	-	145	148271226	-	CMM_0048	-	hypothetical protein
49	 65.68	-1	65645..67468	+	607	148271227	nagA	CMM_0049	-	putative beta-N-acetylglucosaminidase
50	 66.67	-1	67885..68886	-	333	148271228	ppaB2	CMM_0050	-	putative extracellular protease
51	 64.91	-1	69085..69936	+	283	148271229	pelA2	CMM_0051	-	hypothetical protein
52	 51.92	-2	70785..71645	-	286	148271230	chpC	CMM_0052	-	serine protease
53	 59.30	-2	74779..75633	+	284	148271231	chpF	CMM_0053	-	serine protease
54	 66.17	-1	76541..77545	-	334	148271232	-	CMM_0054	-	hypothetical protein
55	 68.06	-1	77538..78542	-	334	148271233	-	CMM_0055	-	hypothetical protein
56	 71.34	0	79094..79756	-	220	148271234	-	CMM_0056	-	hypothetical protein
57	 66.67	-1	80653..80916	-	87	148271235	-	CMM_0057	-	hypothetical protein
58	 64.02	-2	82453..82716	+	87	148271236	-	CMM_0058	-	hypothetical protein
59	 65.47	-1	82939..83772	+	277	148271237	chpG	CMM_0059	-	putative extracellular serine protease
60	 74.07	0	85126..85584	+	152	148271238	-	CMM_0060	-	hypothetical protein
61	 73.15	0	85938..86894	+	318	148271239	-	CMM_0061	-	putative cell filamentation protein
62	 68.72	-1	91403..91792	+	129	148271240	-	CMM_0062	-	hypothetical protein
63	 71.61	0	92168..92875	+	235	148271241	-	CMM_0063	-	hypothetical protein
64	 56.75	-2	92944..93639	-	231	148271242	-	CMM_0064	-	putative hydrolase
65	 53.41	-2	93727..94533	-	268	148271243	-	CMM_0065	-	putative phosphotransferase
66	 66.19	-1	94677..95309	+	210	148271244	parX	CMM_0066	-	partitioning protein
67	 68.97	0	96096..97265	+	389	148271245	-	CMM_0067	-	putative ATPase
68	 65.81	-1	97383..97616	+	77	148271246	-	CMM_0068	-	hypothetical protein
69	 71.26	0	97673..98977	-	434	148271247	nhaA1	CMM_0069	-	NahA family Na(+)/H(+) antiporter
70	 73.37	0	99640..102741	-	1033	148271248	sbtA	CMM_0070	-	subtilisin-like serine protease
71	 62.80	-2	103428..104384	-	318	148271249	ppaE	CMM_0071	-	hypothetical protein
72	 61.81	-2	106123..106863	-	246	148271250	-	CMM_0072	-	hypothetical protein
73	 57.11	-2	107334..108860	+	508	148271251	-	CMM_0073	-	putative acyl-CoA synthetase (AMP-forming)
74	 61.71	-2	112168..112389	+	73	148271252	-	CMM_0074	-	hypothetical protein
75	 62.97	-2	113031..114005	-	324	148271253	ppaD	CMM_0075	-	putative extracellular serine protease
76	 62.00	-2	114879..115307	+	142	148271254	-	CMM_0076	-	hypothetical protein
77	 66.67	-1	116970..117137	-	55	148271255	-	CMM_0077	-	hypothetical protein
78	 72.15	0	117213..118871	+	552	148271256	-	CMM_0078	-	putative NADH oxidase
79	 71.00	0	118888..119187	+	99	148271257	-	CMM_0079	-	hypothetical protein
80	 64.78	-2	119184..119501	+	105	148271258	-	CMM_0080	-	hypothetical protein
81	 64.02	-2	119736..120527	-	263	148271259	-	CMM_0081	-	putative short-chain dehydrogenase/reductase
82	 66.46	-1	120538..122925	-	795	148271260	bglB	CMM_0082	-	putative beta-glucosidase
83	 66.94	-1	123070..124908	-	612	148271261	bglC	CMM_0083	-	putative beta-glucosidase/beta-xylosidase
84	 64.91	-1	124978..125889	-	303	148271262	-	CMM_0084	-	putative sugar ABC transporter, permease component
85	 65.00	-1	125886..126968	-	360	148271263	-	CMM_0085	-	putative sugar ABC transporter, permease component
86	 64.63	-2	127043..128320	-	425	148271264	-	CMM_0086	-	putative sugar ABC transporter, binding protein
87	 67.20	-1	128542..129288	+	248	148271265	-	CMM_0087	-	TetR family transcriptional regulator
88	 66.60	-1	129377..130822	-	481	148271266	bglA	CMM_0088	-	putative beta-glucosidase
89	 66.76	-1	131048..132076	+	342	148271267	catR	CMM_0089	-	LacI family transcriptional regulator
90	 64.52	-2	132170..133801	-	543	148271268	tomA	CMM_0090	-	tomatinase, endo-1,4-beta-glycosidase
91	 66.82	-1	134140..134811	-	223	148271269	regB	CMM_0091	-	putative two-component system response regulator
92	 68.48	-1	134808..135962	-	384	148271270	regA	CMM_0092	-	putative two-component system sensor kinase
93	 68.55	-1	135959..138130	-	723	148271271	-	CMM_0093	-	RND family transporter
94	 66.67	-1	138337..139557	+	406	148271272	cytA	CMM_0094	-	putative cytochrome P450
95	 67.68	-1	139554..139751	+	65	148271273	cytB	CMM_0095	-	putative 3Fe-4S ferredoxin
96	 67.83	-1	139748..140950	+	400	148271274	cytC	CMM_0096	-	putative ferredoxin reductase
97	 68.15	-1	141009..143633	-	874	148271275	bglD	CMM_0097	-	glycosyl hydrolase family beta-glucosidase
98	 67.26	-1	143748..144755	-	335	148271276	-	CMM_0098	-	LacI family transcriptional regulator
99	 67.63	-1	144980..147469	+	829	148271277	bglE	CMM_0099	-	hypothetical protein
100	 67.11	-1	147484..149739	+	751	148271278	bglF	CMM_0100	-	beta-galactosidase
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.