IslandPath Analysis: Ralstonia solanacearum GMI1000



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.98   STD DEV: 4.55
Ralstonia solanacearum GMI1000, complete genome - 1..3716413
3440 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.70	0	486..620	+	44	17544720	rpmH	RSc0001	-	50S ribosomal protein L34
2	 68.69	0	718..1113	+	131	17544721	rnpA	RSc0002	-	ribonuclease P protein component
3	 68.25	0	1110..1424	+	104	17544722	-	RSc0003	-	hypothetical protein
4	 65.76	0	1431..3092	+	553	17544723	-	RSc0004	-	putative inner membrane protein translocase component YidC
5	 70.40	0	3222..4667	+	481	17544724	trmE	RSc0005	-	tRNA modification GTPase TrmE
6	 65.43	0	4757..5080	+	107	17544725	-	RSc0006	-	hypothetical protein
7	 66.67	0	5188..5721	+	177	17544726	-	RSc0007	-	hypothetical protein
8	 63.38	0	6204..6416	-	70	17544727	rpsU	RSc0008	-	30S ribosomal protein S21
9	 69.64	0	6899..8443	-	514	17544728	-	RSc0009	-	drug efflux lipoprotein
10	 65.87	0	8446..11595	-	1049	17544729	acrB	RSc0010	-	putative acriflavin resistance transmembrane protein
11	 70.68	0	11621..12817	-	398	17544730	acrA	RSc0011	-	acriflavin resistance lipoprotein A precursor
12	 65.61	0	13346..14005	+	219	17544731	acrR	RSc0012	-	putative AcrAB operon repressor transcription regulator protein
13	 71.36	0	14002..14895	+	297	17544732	-	RSc0013	-	hypothetical protein
14	 73.58	+1	14967..16412	+	481	17544733	gor	RSc0014	-	glutathione reductase oxidoreductase protein
15	 72.50	+1	16566..17456	+	296	17544734	-	RSc0015	-	hypothetical protein
16	 66.01	0	17482..18543	-	353	17544735	serA1	RSc0016	-	putative D-3-phosphoglycerate dehydrogenase oxidoreductase protein
17	 67.31	0	18932..20800	+	622	17544736	pckA	RSc0017	-	phosphoenolpyruvate carboxykinase
18	 69.52	0	21645..22484	+	279	17544737	-	RSc0018	-	response regulator transcription regulator protein
19	 66.67	0	22608..23075	+	155	17544738	-	RSc0019	-	hypothetical protein
20	 68.95	0	23149..23937	-	262	17544739	-	RSc0020	-	hypothetical protein
21	 71.58	+1	24619..26082	-	487	17544740	-	RSc0021	-	transmembrane sensor histidine kinase transcription regulator protein
22	 66.72	0	26383..28443	+	686	17544741	cstA	RSc0022	-	carbon starvation A transmembrane protein
23	 63.08	0	28493..28687	+	64	17544742	-	RSc0023	-	hypothetical protein
24	 72.20	+1	28773..29531	-	252	17544743	-	RSc0024	-	putative signal peptide protein
25	 65.90	0	29697..30218	-	173	17544744	-	RSc0025	-	hypothetical protein
26	 68.21	0	30445..31092	-	215	17544745	-	RSc0026	-	hypothetical protein
27	 68.23	0	31089..32300	-	403	17544746	metX	RSc0027	-	homoserine O-acetyltransferase
28	 71.75	+1	32580..34073	-	497	17544747	gabD1	RSc0028	-	succinate-semialdehyde dehydrogenase oxidoreductase protein
29	 69.24	0	34078..35358	-	426	17544748	goaG	RSc0029	-	4-aminobutyrate aminotransferase protein
30	 72.48	+1	35476..37005	+	509	17544749	-	RSc0030	-	putative transcription regulator protein
31	 70.02	0	37200..37856	-	218	17544750	slmA	RSc0031	-	nucleoid occlusion protein
32	 71.88	+1	37895..38758	-	287	17544751	-	RSc0032	-	hypothetical protein
33	 64.09	0	38758..39690	-	310	17544752	argB	RSc0033	-	acetylglutamate kinase
34	 68.18	0	39866..40459	+	197	17544753	-	RSc0034	-	RNA polymerase sigma factor
35	 68.69	0	40490..40687	+	65	17544754	-	RSc0035	-	hypothetical protein
36	 80.66	+2	40687..40929	+	80	17544755	-	RSc0036	-	putative signal peptide protein
37	 69.91	0	40971..41186	-	71	17544756	-	RSc0037	-	hypothetical protein
38	 70.63	0	41235..41738	-	167	17544757	-	RSc0038	-	putative transmembrane protein
39	 71.34	0	41881..43227	+	448	17544758	-	RSc0039	-	transmembrane sensor histidine kinase transcription regulator protein
40	 71.50	0	43274..43852	+	192	17544759	-	RSc0040	-	response regulator transcription regulator protein
41	 64.66	0	44050..45342	+	430	17544760	-	RSc0041	-	hypothetical protein
42	 65.84	0	45560..46891	-	443	17544761	hslU	RSc0042	-	ATP-dependent protease ATP-binding subunit
43	 67.41	0	46926..47462	-	178	17544762	hslV	RSc0043	-	ATP-dependent protease peptidase subunit
44	 69.11	0	47608..49200	-	530	17544763	-	RSc0044	-	substrate-binding periplasmic (PBP) ABC transporter protein
45	 70.98	0	49301..50575	-	424	17544764	-	RSc0045	-	hypothetical protein
46	 63.33	0	50669..51088	-	139	17544765	dksA	RSc0046	-	putative DNAK suppressor protein
47	 65.11	0	51498..52586	-	362	17544766	-	RSc0047	-	hypothetical protein
48	 73.22	+1	52574..53092	-	172	17544767	-	RSc0048	-	putative transcription regulator protein
49	 72.16	+1	53181..54437	-	418	17544768	-	RSc0049	-	putative hemaggltinin-related protein
50	 69.35	0	54450..55976	-	508	17544769	-	RSc0050	-	hypothetical protein
51	 71.44	0	56123..57316	-	397	17544770	-	RSc0051	-	hypothetical protein
52	 71.31	0	57356..58345	-	329	17544771	xerC	RSc0052	-	site-specific tyrosine recombinase XerC
53	 70.03	0	58359..59072	-	237	17544772	-	RSc0053	-	hypothetical protein
54	 67.42	0	59072..60538	-	488	17544773	gatB	RSc0054	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
55	 75.36	+1	60624..61601	-	325	17544774	-	RSc0055	-	putative signal peptide protein
56	 68.66	0	61580..62080	-	166	17544775	-	RSc0056	-	lipoprotein
57	 70.36	0	62121..63608	-	495	17544776	gatA	RSc0057	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
58	 67.33	0	63700..63999	-	99	17544777	gatC	RSc0058	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
59	 66.09	0	64477..65520	+	347	17544778	mreB	RSc0059	-	rod shape-determining protein
60	 72.53	+1	65698..66738	+	346	17544779	mreC	RSc0060	-	rod shape-determining MREC transmembrane protein
61	 67.45	0	66750..67262	+	170	17544780	mreD	RSc0061	-	rod shape-determining MRED transmembrane protein
62	 69.62	0	67285..69690	+	801	17544781	-	RSc0062	-	substrate-binding transmembrane protein
63	 65.97	0	69714..70856	+	380	17544782	mdrB	RSc0063	-	rod shape-determining (RODA protein) transmembrane
64	 69.99	0	70887..72692	-	601	17544783	-	RSc0064	-	putative long-chain-fatty-acid--CoA ligase protein
65	 67.09	0	73037..73975	+	312	17544784	-	RSc0065	-	transcription regulator protein
66	 65.22	0	74076..76709	-	877	17544785	topB	RSc0066	-	DNA topoisomerase III
67	 70.00	0	76940..77329	-	129	17544786	-	RSc0067	-	putative thioredoxin-like protein
68	 72.31	+1	77370..78575	-	401	17544787	smf	RSc0068	-	SMF protein
69	 69.14	0	78593..79765	-	390	17544788	-	RSc0069	-	signal peptide protein
70	 63.53	0	80019..80528	+	169	17544789	def	RSc0070	-	peptide deformylase
71	 70.75	0	80567..82549	+	660	17544790	-	RSc0071	-	hypothetical protein
72	 72.56	+1	82595..83578	+	327	17544791	fmt	RSc0072	-	methionyl-tRNA formyltransferase
73	 69.14	0	83613..84260	+	215	17544792	-	RSc0073	-	transporter transmembrane protein
74	 67.60	0	84379..85239	+	286	17544793	htpX	RSc0074	-	heat shock protein HtpX
75	 71.49	0	85330..86655	+	441	17544794	rrmB	RSc0075	-	putative RNA methyltransferase (SUN protein)
76	 69.39	0	86708..87478	+	256	17544795	-	RSc0076	-	proline rich signal peptide protein
77	 68.47	0	87475..89910	+	811	17544796	-	RSc0077	-	two component sensor histidine kinase transcription regulator protein
78	 67.22	0	89947..90666	+	239	17544797	-	RSc0078	-	two component response regulator transcription regulator protein
79	 59.76	-1	91044..93431	+	795	17544798	-	RSc0079	-	hypothetical protein
80	 65.03	0	93670..93975	+	101	17544799	-	RSc0080	-	hypothetical protein
81	 71.21	0	94180..95082	+	300	17544800	-	RSc0081	-	hypothetical protein
82	 71.54	+1	95113..96465	+	450	17544801	-	RSc0082	-	hypothetical protein
83	 73.88	+1	96462..97307	+	281	17544802	-	RSc0083	-	hypothetical protein
84	 63.69	0	97383..98288	+	301	17544803	-	RSc0084	-	amino-acid-binding periplasmic (PBP) ABC transporter protein
85	 73.51	+1	98292..99518	-	408	161621735	cca	RSc0085	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
86	 68.12	0	99578..100267	-	229	17544805	-	RSc0086	-	hypothetical protein
87	 71.94	+1	100460..101464	-	334	17544806	-	RSc0087	-	putative NADH-ubiquinone oxidoreductase oxidoreductase protein
88	 68.66	0	101627..103579	-	650	17544807	slt	RSc0088	-	soluble lytic murein transglycosylase precursor transmembrane protein
89	 72.44	+1	103618..104223	+	201	17544808	-	RSc0089	-	hypothetical protein
90	 73.20	+1	104315..104773	-	152	17544809	-	RSc0090	-	hypothetical protein
91	 67.27	0	104782..105612	-	276	17544810	metF	RSc0091	-	5,10-methylenetetrahydrofolate reductase oxidoreductase protein
92	 61.11	-1	105626..105967	-	113	17544811	-	RSc0092	-	hypothetical protein
93	 64.28	0	106034..107458	-	474	17544812	ahcY	RSc0093	-	S-adenosyl-L-homocysteine hydrolase
94	 57.79	-2	107707..108258	-	183	17544813	-	RSc0094	-	putative lipoprotein transmembrane
95	 56.02	-2	108255..108686	-	143	17544814	-	RSc0095	-	hypothetical protein
96	 55.32	-2	108738..109019	+	93	17544815	-	RSc0096	-	hypothetical protein
97	 69.70	0	109053..110504	+	483	17544816	-	RSc0097	-	putative alkaline phosphatase lipoprotein transmembrane
98	 69.52	0	110524..111927	+	467	17544817	-	RSc0098	-	putative alkaline phosphatase signal peptide protein
99	 73.53	+1	112009..112707	+	232	17544818	-	RSc0099	-	putative signal peptide protein
100	 72.41	+1	112778..113683	+	301	17544819	thiD	RSc0100	-	bifunctional hydroxy-phosphomethylpyrimidine kinase/hydroxy-methylpyrimidine kinase
66.98	MEAN

4.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.