IslandPath Analysis: Gramella forsetii KT0803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.46   STD DEV: 3.62
Gramella forsetii KT0803, complete genome - 1..3798465
3584 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.16	0	2..709	+	235	120434373	-	GFO_0001	-	hypothetical protein
2	 36.73	0	715..1332	+	205	120434374	-	GFO_0002	-	negative transcriptional regulator
3	 34.89	0	1348..1926	+	192	120434375	-	GFO_0003	-	hypothetical protein
4	 35.90	0	1901..2641	-	246	120434376	-	GFO_0004	-	TerC family integral membrane protein
5	 39.06	0	2733..3221	-	162	120434377	-	GFO_0005	-	secreted protein
6	 34.07	0	3434..6157	+	907	120434378	-	GFO_0006	-	sugar-binding sensor histidine kinase/response regulator hybrid
7	 25.00	-2	6211..6366	-	51	120434379	-	GFO_0007	-	hypothetical protein
8	 40.04	0	6397..7737	+	446	120434380	-	GFO_0008	-	major facilitator superfamily permease sugar transporter
9	 38.32	0	7743..9347	+	534	120434381	-	GFO_0009	-	glycosy hydrolase family protein
10	 40.34	+1	9358..12510	+	1050	120434382	-	GFO_0010	-	TonB-dependent outer membrane receptor
11	 39.10	0	12514..14265	+	583	120434383	-	GFO_0011	-	tetratricopeptide repeat-containing SusD/RagB family protein
12	 39.37	0	14387..15280	+	297	120434384	-	GFO_0012	-	PfkB family carbohydrate kinase
13	 43.12	+1	15328..15654	+	108	120434385	-	GFO_0013	-	small multidrug resistance protein
14	 34.04	0	15743..16597	+	284	120434386	-	GFO_0014	-	metal-dependent membrane protease
15	 38.37	0	16846..18255	-	469	120434387	hasA	GFO_0015	-	hyaluronan synthase
16	 29.93	-1	18454..18600	-	48	120434388	-	GFO_0016	-	hypothetical protein
17	 40.32	+1	18835..19020	+	61	120434389	-	GFO_0017	-	membrane protein
18	 36.33	0	19086..20918	-	610	120434390	-	GFO_0018	-	adenylate/guanylate cyclase catalytic domain-containing protein
19	 36.94	0	20943..21413	-	156	120434391	-	GFO_0019	-	secreted protein
20	 38.78	0	21664..22893	+	409	120434392	-	GFO_0020	-	major facilitator superfamily permease
21	 34.15	0	23021..23389	+	122	120434393	-	GFO_0021	-	secreted protein
22	 36.00	0	23536..24471	-	311	120434394	-	GFO_0022	-	hypothetical protein
23	 41.19	+1	24473..29257	-	1594	120434395	-	GFO_0023	-	TPR repeat-containing protein
24	 42.92	+1	29703..31673	-	656	120434396	-	GFO_0024	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
25	 38.74	0	31678..32565	-	295	120434397	-	GFO_0025	-	CDF family cation efflux protein
26	 37.54	0	32566..32922	-	118	120434398	-	GFO_0026	-	hypothetical protein
27	 37.62	0	32983..33402	-	139	120434399	-	GFO_0027	-	Fur family transcriptional regulator protein
28	 39.83	0	33463..34647	-	394	120434400	-	GFO_0028	-	HlyD family secretion protein
29	 42.43	+1	34654..38994	-	1446	120434401	-	GFO_0029	-	AcrB/AcrD/AcrF family heavy metal cation efflux protein
30	 39.39	0	39078..39440	-	120	120434402	-	GFO_0030	-	hypothetical protein
31	 40.39	+1	39503..41938	-	811	120434403	-	GFO_0031	-	glycosy hydrolase family protein
32	 40.46	+1	42573..43751	-	392	120434404	-	GFO_0032	-	glycosy hydrolase family protein
33	 41.58	+1	43979..45130	-	383	120434405	-	GFO_0033	-	secreted protein
34	 42.93	+1	45150..46775	-	541	120434406	-	GFO_0034	-	SusD/RagB family protein
35	 40.99	+1	46753..49728	-	991	120434407	-	GFO_0035	-	TonB-dependent outer membrane receptor
36	 37.45	0	49987..54045	-	1352	120434408	-	GFO_0036	-	two-component system sensor histidine kinase/response regulator hybrid
37	 36.18	0	54298..55350	+	350	120434409	-	GFO_0037	-	adenylate/guanylate cyclase catalytic subunit
38	 39.38	0	55554..56297	+	247	120434410	-	GFO_0038	-	short-chain dehydrogenase/reductase family protein
39	 39.52	0	56504..57619	-	371	120434411	nemA	GFO_0039	-	N-ethylmaleimide reductase
40	 38.60	0	57714..58283	-	189	120434412	-	GFO_0040	-	cyclic nucleotide-binding domain-containing protein
41	 36.55	0	58396..59109	-	237	120434413	-	GFO_0041	-	hypothetical protein
42	 38.62	0	59215..59649	+	144	120434414	-	GFO_0042	-	transcription regulator AsnC
43	 36.33	0	59726..60559	-	277	120434415	-	GFO_0043	-	phospholipase A1
44	 33.73	0	60634..61386	-	250	120434416	-	GFO_0044	-	hypothetical protein
45	 38.82	0	61456..62694	-	412	120434417	-	GFO_0045	-	hypothetical protein
46	 35.71	0	62737..63744	-	335	120434418	-	GFO_0046	-	secreted protein
47	 39.89	0	64134..65246	-	370	120434419	mscS	GFO_0047	-	small-conductance mechanosensitive ion channel protein
48	 30.63	-1	65258..65479	-	73	120434420	-	GFO_0048	-	hypothetical protein
49	 40.64	+1	65646..68777	-	1043	120434421	-	GFO_0049	-	AcrB/AcrD/AcrF family membrane transporter
50	 37.73	0	68779..69846	-	355	120434422	-	GFO_0050	-	HlyD family secretion protein
51	 36.99	0	69873..71240	-	455	120434423	-	GFO_0051	-	outer membrane efflux protein
52	 38.06	0	71305..71769	-	154	120434424	-	GFO_0052	-	transcriptional regulator
53	 37.95	0	71849..72757	-	302	120434425	-	GFO_0053	-	hypothetical protein
54	 43.60	+1	72767..86353	-	4528	120434426	-	GFO_0054	-	cadherin domain-containing proteins
55	 40.96	+1	87231..88619	+	462	120434427	-	GFO_0056	-	M20/M25/M40 family peptidase
56	 38.15	0	89089..91164	+	691	120434428	-	GFO_0057	-	peptidase family M49
57	 35.52	0	91556..91966	+	136	120434429	-	GFO_0058	-	transposase
58	 36.32	0	92054..92521	+	155	120434430	-	GFO_0059	-	IS116/IS110/IS902 family transposase
59	 36.99	0	92644..92862	-	72	120434431	-	GFO_0060	-	hypothetical protein
60	 39.21	0	93044..93622	-	192	120434432	phnA	GFO_0061	-	protein involved in phosphonate metabolism
61	 38.13	0	94026..95735	-	569	120434433	-	GFO_0062	-	secreted protein containing DUF885
62	 38.41	0	95923..96927	-	334	120434434	-	GFO_0063	-	transmembrane metal-dependent hydrolase
63	 37.04	0	97102..98880	-	592	120434435	-	GFO_0064	-	transmembrane MutS family DNA mismatch repair protein
64	 38.89	0	98880..99239	-	119	120434436	-	GFO_0065	-	hypothetical protein
65	 37.06	0	99333..99950	-	205	120434437	-	GFO_0066	-	hypothetical protein
66	 37.89	0	99952..100302	-	116	120434438	-	GFO_0067	-	hypothetical protein
67	 38.53	0	100302..101051	-	249	120434439	-	GFO_0068	-	N-formylkynurenine (aryl-) formamidase
68	 32.00	-1	101190..101489	-	99	120434440	-	GFO_0069	-	hypothetical protein
69	 30.45	-1	101486..101728	-	80	120434441	-	GFO_0070	-	hypothetical protein
70	 36.71	0	101884..103008	-	374	120434442	hemN	GFO_0071	-	oxygen-independent coproporphyrinogen III oxidase
71	 41.45	+1	103073..103651	-	192	120434443	ruvC	GFO_0072	-	Holliday junction resolvase
72	 34.30	0	103722..104864	+	380	120434444	-	GFO_0073	-	transmembrane family-2 glycosyl transferase
73	 36.14	0	105091..105624	-	177	120434445	-	GFO_0074	-	hypothetical protein
74	 36.13	0	105848..106993	-	381	120434446	-	GFO_0075	-	TPR repeat-containing protein
75	 39.87	0	107012..107485	-	157	120434447	-	GFO_0076	-	hypothetical protein
76	 33.68	0	107502..108947	-	481	120434448	-	GFO_0077	-	hypothetical protein
77	 37.43	0	108944..109309	-	121	120434449	-	GFO_0078	-	BlaI-like antibiotic resistance-related regulatory protein
78	 37.15	0	109559..110056	+	165	120434450	-	GFO_0079	-	hypothetical protein
79	 40.63	+1	110316..111356	+	346	120434451	-	GFO_0080	-	FAD-dependent pyridine nucleotide-disulfide oxidoreductase
80	 33.16	0	111465..112040	+	191	120434452	-	GFO_0081	-	hypothetical protein
81	 37.35	0	112037..112933	+	298	120434453	-	GFO_0082	-	hypothetical protein
82	 45.18	+2	112953..113408	+	151	120434454	-	GFO_0083	-	Rieske [2Fe-2S] domain-containing protein
83	 35.68	0	113520..114287	+	255	120434455	-	GFO_0084	-	Mg-dependent DNase
84	 37.55	0	114338..115474	+	378	120434456	-	GFO_0085	-	hypothetical protein
85	 36.54	0	115464..116492	+	342	120434457	ansA	GFO_0086	-	L-asparaginase I
86	 40.05	0	116715..117518	+	267	120434458	exbB	GFO_0088	-	ExbB-like MotA/TolQ/ExbB family biopolymer transport protein
87	 38.58	0	117532..117969	+	145	120434459	-	GFO_0089	-	membrane protein
88	 41.71	+1	117971..118579	+	202	120434460	-	GFO_0090	-	hypothetical protein
89	 34.37	0	118610..119092	+	160	120434461	-	GFO_0091	-	hypothetical protein
90	 33.89	0	119185..119901	+	238	120434462	-	GFO_0092	-	secreted protein
91	 32.39	-1	119870..120502	-	210	120434463	-	GFO_0093	-	hypothetical protein
92	 38.52	0	120502..121965	-	487	120434464	rpoN	GFO_0094	-	RNA polymerase sigma-54 factor
93	 35.52	0	122047..122916	-	289	120434465	rluD	GFO_0095	-	RNA pseudouridylate synthase
94	 39.02	0	122921..124363	-	480	120434466	asnC	GFO_0096	-	asparaginyl-tRNA synthetase
95	 37.97	0	124448..126862	-	804	120434467	-	GFO_0097	-	hypothetical protein
96	 35.73	0	126939..129398	-	819	120434468	-	GFO_0098	-	hypothetical protein
97	 37.14	0	129496..130047	-	183	120434469	frr	GFO_0099	-	ribosome recycling factor
98	 38.42	0	130074..130781	-	235	120434470	pyrH	GFO_0100	-	uridylate kinase
99	 41.27	+1	130977..131669	+	230	120434471	-	GFO_0101	-	neutral zinc metallopeptidase
100	 36.31	0	131782..132252	-	156	120434472	-	GFO_0102	-	transcription regulator AsnC
36.46	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.