IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.15	0	389..1852	+	487	167643974	-	Caul_0001	-	chromosomal replication initiator protein DnaA
2	 69.33	0	2016..2654	-	212	167643975	-	Caul_0002	-	2OG-Fe(II) oxygenase
3	 68.70	0	2749..5409	+	886	167643976	-	Caul_0003	-	peptidase M1 membrane alanine aminopeptidase
4	 64.98	0	5803..7698	+	631	167643977	-	Caul_0004	-	chaperone protein DnaK
5	 62.34	-1	7890..8351	+	153	167643978	-	Caul_0005	-	hypothetical protein
6	 69.36	0	8388..9536	+	382	167643979	-	Caul_0006	-	chaperone protein DnaJ
7	 60.44	-1	9533..10543	-	336	167643980	-	Caul_0007	-	putative DNA-binding protein
8	 72.19	+1	10642..13356	+	904	167643981	-	Caul_0008	-	DNA mismatch repair protein
9	 71.62	0	13433..16258	+	941	167643982	-	Caul_0009	-	PII uridylyl-transferase
10	 62.80	-1	17391..17726	-	111	167643983	-	Caul_0010	-	hypothetical protein
11	 70.13	0	18125..19681	+	518	167643984	-	Caul_0011	-	integral membrane protein MviN
12	 68.12	0	20020..21054	+	344	167643985	-	Caul_0012	-	tryptophanyl-tRNA synthetase
13	 64.71	0	21091..21498	-	135	167643986	-	Caul_0013	-	ferric uptake regulator family protein
14	 69.59	0	21545..21988	-	147	167643987	-	Caul_0014	-	ribosomal-protein-alanine acetyltransferase
15	 73.68	+1	21985..22626	-	213	167643988	-	Caul_0015	-	peptidase M22 glycoprotease
16	 70.03	0	22623..23276	-	217	167643989	-	Caul_0016	-	hypothetical protein
17	 72.32	+1	23281..23934	-	217	167643990	-	Caul_0017	-	hypothetical protein
18	 66.67	0	24099..24686	-	195	167643991	-	Caul_0018	-	hypothetical protein
19	 67.02	0	24846..25415	-	189	167643992	-	Caul_0019	-	scaffold protein Nfu/NifU
20	 64.38	0	25534..26802	+	422	167643993	-	Caul_0020	-	cytochrome P450
21	 66.00	0	26966..28318	+	450	167643994	-	Caul_0021	-	RNA modification protein
22	 71.22	0	28315..29259	+	314	167643995	-	Caul_0022	-	PhoH family protein
23	 66.46	0	29260..29748	+	162	167643996	-	Caul_0023	-	hypothetical protein
24	 72.13	+1	29760..30674	+	304	167643997	-	Caul_0024	-	CBS domain-containing protein
25	 70.13	0	30671..32257	+	528	167643998	-	Caul_0025	-	apolipoprotein N-acyltransferase
26	 64.37	0	32306..32740	+	144	167643999	-	Caul_0026	-	XRE family transcriptional regulator
27	 66.91	0	32867..34090	+	407	167644000	-	Caul_0027	-	S-adenosylmethionine synthetase
28	 70.78	0	34182..34862	+	226	167644001	-	Caul_0028	-	tRNA (guanine-N(7))-methyltransferase
29	 62.92	-1	34925..35458	-	177	167644002	-	Caul_0029	-	inorganic diphosphatase
30	 65.17	0	35779..36378	+	199	167644003	-	Caul_0030	-	hypothetical protein
31	 66.84	0	36381..38087	+	568	167644004	-	Caul_0031	-	transcription elongation factor NusA
32	 67.57	0	38142..38807	+	221	167644005	-	Caul_0032	-	hypothetical protein
33	 71.06	0	39009..42146	+	1045	167644006	-	Caul_0033	-	translation initiation factor IF-2
34	 71.32	0	42282..42797	+	171	167644007	-	Caul_0034	-	hypothetical protein
35	 68.47	0	42821..43375	+	184	167644008	-	Caul_0035	-	hypothetical protein
36	 67.38	0	43559..45103	+	514	167644009	-	Caul_0036	-	TPR repeat-containing protein
37	 70.85	0	45328..46116	+	262	167644010	-	Caul_0037	-	dienelactone hydrolase
38	 67.07	0	46237..46731	+	164	167644011	-	Caul_0038	-	ribosome-binding factor A
39	 67.20	0	46734..47666	+	310	167644012	-	Caul_0039	-	tRNA pseudouridine synthase B
40	 61.48	-1	47681..47950	+	89	167644013	-	Caul_0040	-	ribosomal protein S15
41	 64.11	0	48198..50348	+	716	167644014	-	Caul_0041	-	polynucleotide phosphorylase/polyadenylase
42	 70.14	0	51024..51743	-	239	167644015	-	Caul_0042	-	ribonuclease T2
43	 70.30	0	51941..52573	-	210	167644016	-	Caul_0043	-	lysine exporter protein LysE/YggA
44	 68.64	0	53347..55731	+	794	167644017	-	Caul_0044	-	TonB-dependent siderophore receptor
45	 68.57	0	55826..56509	+	227	167644018	-	Caul_0045	-	putative hydroxylase
46	 71.91	+1	56597..59302	+	901	167644019	-	Caul_0046	-	PAS/PAC sensor hybrid histidine kinase
47	 67.87	0	59376..61037	+	553	167644020	-	Caul_0047	-	general substrate transporter
48	 72.81	+1	61063..61941	-	292	167644021	-	Caul_0048	-	siroheme synthase
49	 70.19	0	62085..62651	+	188	167644022	-	Caul_0049	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
50	 68.82	0	62648..64834	+	728	167644023	-	Caul_0050	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
51	 66.13	0	64928..65671	+	247	167644024	-	Caul_0051	-	LuxR family transcriptional regulator
52	 71.26	0	65746..66093	+	115	167644025	-	Caul_0052	-	hypothetical protein
53	 65.30	0	66155..66373	+	72	167644026	-	Caul_0053	-	hypothetical protein
54	 65.05	0	66437..66868	+	143	167644027	-	Caul_0054	-	hypothetical protein
55	 72.94	+1	66892..67497	-	201	167644028	-	Caul_0055	-	hypothetical protein
56	 69.34	0	67526..68572	+	348	167644029	-	Caul_0056	-	molybdenum cofactor biosynthesis protein A
57	 73.75	+1	68575..68814	+	79	167644030	-	Caul_0057	-	molybdopterin converting factor, subunit 1
58	 68.25	0	68811..69251	+	146	167644031	-	Caul_0058	-	molybdopterin biosynthesis MoaE protein
59	 67.39	0	69263..69817	+	184	167644032	-	Caul_0059	-	molybdenum cofactor biosynthesis protein B
60	 69.85	0	69814..70284	+	156	167644033	-	Caul_0060	-	molybdenum cofactor biosynthesis protein C
61	 73.87	+1	70290..71303	-	337	167644034	-	Caul_0061	-	hypothetical protein
62	 71.69	+1	71398..72273	+	291	167644035	-	Caul_0062	-	aldo/keto reductase
63	 69.93	0	72339..73043	+	234	167644036	-	Caul_0063	-	acylneuraminate cytidylyltransferase
64	 70.26	0	73155..74267	-	370	167644037	-	Caul_0064	-	alanine dehydrogenase
65	 66.03	0	74388..74861	+	157	167644038	-	Caul_0065	-	AsnC family transcriptional regulator
66	 69.93	0	74945..75772	+	275	167644039	-	Caul_0066	-	carbonic anhydrase
67	 70.15	0	75991..81039	+	1682	167644040	-	Caul_0067	-	alpha-2-macroglobulin domain-containing protein
68	 73.57	+1	81219..83261	+	680	167644041	-	Caul_0068	-	penicillin-binding protein 1C
69	 62.90	-1	83519..84340	+	273	167644042	-	Caul_0069	-	flagellin domain-containing protein
70	 65.55	0	84480..85106	-	208	167644043	-	Caul_0070	-	carbonate dehydratase
71	 70.18	0	85099..85752	-	217	167644044	-	Caul_0071	-	maleylacetoacetate isomerase
72	 69.62	0	85752..86429	-	225	167644045	-	Caul_0072	-	fumarylacetoacetate (FAA) hydrolase
73	 66.33	0	86658..87536	+	292	167644046	-	Caul_0073	-	ABC transporter related
74	 65.82	0	87536..91186	+	1216	167644047	-	Caul_0074	-	hypothetical protein
75	 67.77	0	91183..91635	+	150	167644048	-	Caul_0075	-	thioesterase superfamily protein
76	 66.83	0	91725..92324	-	199	167644049	-	Caul_0076	-	hypothetical protein
77	 68.92	0	92446..93642	+	398	167644050	-	Caul_0077	-	L-carnitine dehydratase/bile acid-inducible protein F
78	 68.33	0	93642..94061	+	139	167644051	-	Caul_0078	-	glutathione-dependent formaldehyde-activating GFA
79	 71.88	+1	94113..96032	-	639	167644052	-	Caul_0079	-	signal transduction histidine kinase
80	 69.77	0	96222..96608	+	128	167644053	-	Caul_0080	-	hypothetical protein
81	 74.49	+1	96605..97000	+	131	167644054	-	Caul_0081	-	hypothetical protein
82	 65.86	0	97093..97710	+	205	167644055	-	Caul_0082	-	superoxide dismutase
83	 69.22	0	97734..98594	-	286	167644056	-	Caul_0083	-	metallophosphoesterase
84	 71.63	0	98591..99457	-	288	167644057	-	Caul_0084	-	diacylglycerol kinase catalytic region
85	 69.59	0	99577..99918	+	113	167644058	-	Caul_0085	-	17 kDa surface antigen
86	 67.94	0	100001..100471	+	156	167644059	-	Caul_0086	-	OmpA/MotB domain-containing protein
87	 64.32	0	100797..101009	+	70	167644060	-	Caul_0087	-	hypothetical protein
88	 67.86	0	101020..101271	+	83	167644061	-	Caul_0088	-	hypothetical protein
89	 68.41	0	101360..102160	-	266	167644062	-	Caul_0089	-	two-component response regulator
90	 61.29	-1	102405..102590	+	61	167644063	-	Caul_0090	-	hypothetical protein
91	 68.15	0	102593..103198	+	201	167644064	-	Caul_0091	-	ECF subfamily RNA polymerase sigma-24 factor
92	 71.45	0	103195..104907	+	570	167644065	-	Caul_0092	-	signal transduction histidine kinase
93	 70.37	0	104974..105108	+	44	167644066	-	Caul_0093	-	entericidin EcnAB
94	 69.30	0	105378..106439	+	353	167644067	-	Caul_0094	-	hypothetical protein
95	 70.17	0	106458..107285	-	275	167644068	-	Caul_0095	-	MCP methyltransferase, CheR-type
96	 67.49	0	107282..107647	-	121	167644069	-	Caul_0096	-	response regulator receiver protein
97	 71.57	0	107735..108427	-	230	167644070	-	Caul_0097	-	hypothetical protein
98	 68.28	0	108507..108692	+	61	167644071	-	Caul_0098	-	hypothetical protein
99	 70.40	0	108693..109469	+	258	167644072	-	Caul_0099	-	3'(2'),5'-bisphosphate nucleotidase
100	 66.03	0	109905..110375	-	156	167644073	-	Caul_0100	-	hypothetical protein
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.