IslandPath Analysis: Ehrlichia canis str. Jake



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.73   STD DEV: 2.95
Ehrlichia canis str. Jake, complete genome - 1..1315030
925 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.45	-1	475..1647	+	390	73666634	-	Ecaj_0001	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2	 23.35	-2	1644..2204	-	186	73666635	-	Ecaj_0002	-	hypothetical protein
3	 33.81	+1	2588..3430	+	280	73666636	glyQ	Ecaj_0003	-	glycyl-tRNA synthetase subunit alpha
4	 26.35	-1	3446..5551	+	701	73666637	-	Ecaj_0004	-	glycyl-tRNA synthetase, beta subunit
5	 34.99	+1	5613..6761	+	382	73666638	-	Ecaj_0005	-	heat shock protein DnaJ
6	 29.71	0	7496..8323	-	275	73666639	-	Ecaj_0006	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
7	 27.08	-1	8415..8990	+	191	73666640	-	Ecaj_0007	-	acyl-phosphate glycerol-3-phosphate acyltransferase
8	 28.66	0	8996..9466	-	156	73666641	-	Ecaj_0008	-	Holliday junction endonuclease RuvC
9	 33.33	0	9468..10292	-	274	73666642	-	Ecaj_0009	-	cytochrome c oxidase, subunit III
10	 35.72	+1	10390..11394	-	334	73666643	-	Ecaj_0010	-	uroporphyrinogen decarboxylase HemE
11	 32.88	0	11820..12707	+	295	73666644	-	Ecaj_0011	-	CBS/transport-associated domain-containing protein
12	 29.21	0	12690..13223	-	177	73666645	-	Ecaj_0012	-	prohead peptidase
13	 31.30	0	13333..14514	-	393	73666646	-	Ecaj_0013	-	HK97 family phage portal protein
14	 28.22	0	14770..15531	+	253	73666647	-	Ecaj_0014	-	putative methylase involved in ubiquinone/menaquinone biosynthesis
15	 31.42	0	15553..16494	+	313	73666648	-	Ecaj_0015	-	quinolinate synthetase
16	 32.54	0	16694..17071	-	125	73666649	-	Ecaj_0016	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
17	 35.07	+1	17335..19401	+	688	73666650	-	Ecaj_0017	-	gp140
18	 32.60	0	19831..22002	-	723	73666651	-	Ecaj_0018	-	TRAG protein
19	 33.63	0	22041..23039	-	332	73666652	-	Ecaj_0019	-	type II secretion system protein E
20	 32.51	0	23056..24393	-	445	73666653	-	Ecaj_0020	-	conjugation TrbI-like protein
21	 27.64	-1	24415..25239	-	274	73666654	-	Ecaj_0021	-	conjugal transfer protein TrbG/VirB9/CagX
22	 29.79	0	25226..25930	-	234	73666655	-	Ecaj_0022	-	VirB8
23	 29.31	0	26023..27165	-	380	73666656	-	Ecaj_0023	-	GTP cyclohydrolase II
24	 28.01	0	27624..28694	-	356	73666657	-	Ecaj_0024	-	TPR repeat-containing protein
25	 25.64	-1	28769..29353	-	194	73666658	-	Ecaj_0025	-	hypothetical protein
26	 33.21	0	29334..30137	-	267	73666659	-	Ecaj_0026	-	diaminopimelate epimerase
27	 25.46	-1	30388..30819	-	143	73666660	-	Ecaj_0027	-	hypothetical protein
28	 30.38	0	31580..32764	+	394	73666661	pgk	Ecaj_0028	-	phosphoglycerate kinase
29	 29.39	0	34033..35199	-	388	73666662	-	Ecaj_0029	-	exodeoxyribonuclease VII large subunit
30	 31.08	0	35196..35861	-	221	73666663	-	Ecaj_0030	-	hypothetical protein
31	 35.24	+1	36072..36911	+	279	161702949	dapD	Ecaj_0031	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
32	 31.45	0	37192..38517	+	441	73666665	trmE	Ecaj_0032	-	tRNA modification GTPase TrmE
33	 31.65	0	39861..40394	-	177	73666666	-	Ecaj_0033	-	phosphopantothenoylcysteine decarboxylase
34	 31.37	0	40504..42540	+	678	73666667	-	Ecaj_0034	-	DEAD/DEAH box helicase:helicase, C- terminal:TypeIII restriction enzyme, res subunit
35	 30.22	0	43875..44837	+	320	73666668	-	Ecaj_0035	-	NADH-ubiquinone oxidoreductase, putativ
36	 31.81	0	44951..45409	-	152	73666669	-	Ecaj_0036	-	dnaK suppressor protein
37	 28.66	0	45523..46185	+	220	73666670	-	Ecaj_0037	-	heme exporter protein CcmB
38	 30.04	0	47344..47586	+	80	73666671	-	Ecaj_0038	-	hypothetical protein
39	 30.78	0	47795..48733	+	312	73666672	-	Ecaj_0039	-	cation efflux protein
40	 28.10	0	49085..49714	+	209	73666673	-	Ecaj_0040	-	putative ABC-type transport system involved in resistance to organic solvents auxiliary component
41	 30.90	0	50131..50418	-	95	73666674	rpsT	Ecaj_0041	-	30S ribosomal protein S20
42	 30.84	0	50579..51301	-	240	73666675	-	Ecaj_0042	-	phospholipid/glycerol acyltransferase
43	 34.77	+1	52387..52944	+	185	73666676	-	Ecaj_0043	-	peptide deformylase
44	 32.19	0	52961..53746	+	261	73666677	-	Ecaj_0044	-	DNA polymerase-related protein
45	 27.79	0	54279..55397	-	372	73666678	recF	Ecaj_0045	-	recombination protein F
46	 29.82	0	56364..57275	-	303	73666679	-	Ecaj_0046	-	ornithine carbamoyltransferase
47	 33.83	+1	57608..58009	-	133	73666680	-	Ecaj_0047	-	hypothetical protein
48	 29.85	0	58330..60915	+	861	73666681	-	Ecaj_0048	-	DNA polymerase I
49	 30.34	0	61565..62233	+	222	73666682	-	Ecaj_0049	-	ribulose-5-phosphate 3-epimerase
50	 32.33	0	62869..63666	+	265	73666683	-	Ecaj_0050	-	hypothetical protein
51	 31.94	0	63678..64394	+	238	73666684	-	Ecaj_0051	-	ABC transporter
52	 30.89	0	64518..66359	+	613	73666685	-	Ecaj_0052	-	ankyrin
53	 30.88	0	66806..67783	-	325	73666686	-	Ecaj_0053	-	trans-hexaprenyltrans transferase
54	 32.99	0	67973..69445	-	490	73666687	-	Ecaj_0054	-	L-glutamine synthetase
55	 31.58	0	69692..70948	+	418	73666688	-	Ecaj_0055	-	tyrosyl-tRNA synthetase
56	 31.50	0	70974..72170	+	398	73666689	-	Ecaj_0056	-	5-aminolevulinate synthase
57	 25.75	-1	72177..72545	-	122	73666690	-	Ecaj_0057	-	endonuclease
58	 29.25	0	73737..74618	+	293	73666691	secF	Ecaj_0058	-	preprotein translocase subunit SecF
59	 37.31	+2	75792..76697	-	301	73666692	-	Ecaj_0059	-	fructose-bisphosphate aldolase
60	 31.14	0	77108..88252	+	3714	73666693	-	Ecaj_0060	-	hypothetical protein
61	 29.79	0	88390..89601	+	403	73666694	-	Ecaj_0061	-	branched-chain alpha-keto acid dehydrogenase subunit E2
62	 32.92	0	90120..92993	+	957	73666695	-	Ecaj_0062	-	hypothetical protein
63	 37.11	+2	93462..95579	+	705	73666696	-	Ecaj_0063	-	hypothetical protein
64	 33.48	0	95573..96256	+	227	73666697	-	Ecaj_0064	-	hypothetical protein
65	 35.79	+1	96886..98673	+	595	73666698	-	Ecaj_0065	-	hypothetical protein
66	 32.92	0	99063..101732	+	889	73666699	-	Ecaj_0066	-	hypothetical protein
67	 35.25	+1	102107..104194	+	695	73666700	-	Ecaj_0067	-	hypothetical protein
68	 29.23	0	104869..106719	+	616	73666701	-	Ecaj_0068	-	hypothetical protein
69	 35.15	+1	107083..109554	+	823	73666702	-	Ecaj_0069	-	hypothetical protein
70	 37.13	+2	109908..110144	+	78	73666703	-	Ecaj_0070	-	hypothetical protein
71	 32.24	0	110411..112336	+	641	73666704	-	Ecaj_0071	-	hypothetical protein
72	 34.68	+1	112504..115254	+	916	73666705	-	Ecaj_0072	-	hypothetical protein
73	 29.39	0	115413..115691	-	92	73666706	-	Ecaj_0073	-	hypothetical protein
74	 33.14	0	116089..117669	+	526	73666707	guaA	Ecaj_0074	-	bifunctional GMP synthase/glutamine amidotransferase protein
75	 32.05	0	118602..119852	+	416	73666708	-	Ecaj_0075	-	citrate synthase
76	 28.36	0	120137..121363	+	408	73666709	-	Ecaj_0076	-	glutamate-cysteine ligase-related protein
77	 26.97	-1	122319..123323	-	334	73666710	-	Ecaj_0077	-	DNA polymerase III, delta subunit
78	 30.33	0	123620..124852	+	410	73666711	-	Ecaj_0078	-	hypothetical protein
79	 29.66	0	124865..125653	+	262	73666712	-	Ecaj_0079	-	hypothetical protein
80	 29.31	0	125650..126891	+	413	73666713	-	Ecaj_0080	-	hypothetical protein
81	 27.45	-1	126897..127151	+	84	73666714	-	Ecaj_0081	-	hypothetical protein
82	 29.35	0	127933..128484	+	183	73666715	-	Ecaj_0082	-	H+-transporting two-sector ATPase, delta(OSCP) subunit
83	 34.90	+1	128497..130026	+	509	73666716	-	Ecaj_0083	-	F0F1 ATP synthase subunit alpha
84	 31.58	0	130038..130550	+	170	73666717	-	Ecaj_0084	-	transcription elongation factor GreA
85	 34.12	+1	130568..131203	+	211	73666718	-	Ecaj_0085	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
86	 29.53	0	131225..131671	+	148	73666719	smpB	Ecaj_0086	-	SsrA-binding protein
87	 29.61	0	133501..135435	-	644	73666720	-	Ecaj_0087	-	cytochrome c assembly protein
88	 32.05	0	136407..138815	+	802	73666721	valS	Ecaj_0088	-	valyl-tRNA synthetase
89	 29.39	0	139464..140300	+	278	73666722	-	Ecaj_0089	-	glycine cleavage T protein(aminomethyl transferase)
90	 32.83	0	141348..142736	-	462	73666723	-	Ecaj_0090	-	amidophosphoribosyltransferase
91	 33.33	0	143984..144565	-	193	73666724	-	Ecaj_0091	-	peptidyl-tRNA hydrolase
92	 35.08	+1	144576..145205	-	209	73666725	-	Ecaj_0092	-	50S ribosomal protein L25/general stress protein Ctc
93	 30.45	0	146168..146860	-	230	73666726	-	Ecaj_0093	-	competence protein F
94	 33.16	0	146860..148029	-	389	73666727	-	Ecaj_0094	-	succinyl-diaminopimelate desuccinylase
95	 32.22	0	149269..150978	-	569	73666728	-	Ecaj_0095	-	TrkA-N
96	 30.94	0	150988..151572	-	194	73666729	-	Ecaj_0096	-	hypothetical protein
97	 30.11	0	151677..152111	-	144	73666730	-	Ecaj_0097	-	hypothetical protein
98	 36.24	+1	152787..153785	-	332	73666731	-	Ecaj_0098	-	pyruvate dehydrogenase subunit beta
99	 31.96	0	154086..155978	-	630	73666732	-	Ecaj_0099	-	hypothetical protein
100	 35.50	+1	156156..157589	+	477	73666733	-	Ecaj_0100	-	microcin-processing peptidase 2
30.73	MEAN

2.95	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.