IslandPath Analysis: Rickettsia bellii RML369-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.34   STD DEV: 3.91
Rickettsia bellii RML369-C, complete genome - 1..1522076
1429 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.74	0	1..822	+	273	91204816	-	RBE_0001	-	hypothetical protein
2	 28.06	0	849..1208	+	119	91204817	trxA	RBE_0002	-	thioredoxin
3	 28.78	0	1220..1966	+	248	91204818	rfbE	RBE_0003	-	O-antigen export system ATP-binding protein RfbE
4	 27.67	0	1963..2739	+	258	91204819	rfbA	RBE_0004	-	O-antigen export system permease protein RfbA
5	 33.24	0	2736..5990	+	1084	91204820	gltD	RBE_0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 33.33	0	6013..6432	-	139	91204821	lexA	RBE_0006	-	SOS-response transcriptional repressors (RecA-mediated autopeptidases)
7	 27.28	-1	6499..7605	-	368	91204822	-	RBE_0007	-	acyltransferase family protein
8	 30.92	0	7636..8670	-	344	91204823	-	RBE_0008	-	hypothetical protein
9	 33.33	0	8764..9258	-	164	91204824	-	RBE_0009	-	hypothetical protein
10	 30.40	0	9277..9822	-	181	91204825	pgsA	RBE_0010	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
11	 31.01	0	9846..11525	-	559	91204826	yidC	RBE_0011	-	putative inner membrane protein translocase component YidC
12	 26.63	-1	11819..12370	-	183	91204827	-	RBE_0012	-	hypothetical protein
13	 30.22	0	12375..12824	-	149	91204828	-	RBE_0013	-	hypothetical protein
14	 30.81	0	13055..13846	+	263	91204829	lgt	RBE_0014	-	prolipoprotein diacylglyceryl transferase
15	 34.97	0	13825..14925	+	366	91204830	-	RBE_0015	-	hypothetical protein
16	 34.38	0	15171..15650	-	159	91204831	-	RBE_0016	-	hypothetical protein
17	 36.81	+1	15643..17370	-	575	91204832	kefB	RBE_0017	-	glutathione-regulated potassium-efflux system protein KefB
18	 29.36	0	17381..17707	-	108	91204833	-	RBE_0018	-	Iojap-related protein
19	 26.84	-1	17827..18057	+	76	91204834	bolA2	RBE_0019	-	BolA-like protein
20	 34.62	0	18422..19666	-	414	91204835	proP1	RBE_0020	-	proline/betaine transporter
21	 32.76	0	19663..20538	-	291	91204836	sam	RBE_0021	-	S-adenosylmethionine transporter
22	 31.44	0	20690..21427	+	245	91204837	ompW	RBE_0022	-	OmpW family outer-membrane protein
23	 31.45	0	21855..22811	+	318	91204838	-	RBE_0023	-	transposase
24	 35.41	+1	22910..24307	+	465	91204839	pntB	RBE_0024	-	NAD(p) transhydrogenase subunit beta
25	 36.84	+1	24362..24931	+	189	91204840	-	RBE_0025	-	hypothetical protein
26	 27.88	0	25085..25744	-	219	91204841	cvpA	RBE_0026	-	putative colicin V production membrane protein
27	 30.70	0	25822..26391	+	189	91204842	-	RBE_0027	-	hypothetical protein
28	 36.51	+1	26696..27607	+	303	91204843	ftsY	RBE_0028	-	Signal recognition particle-docking protein FtsY
29	 27.33	-1	27786..28385	-	199	91204844	-	RBE_0029	-	Sco2 protein precursor
30	 26.67	-1	28639..31071	+	810	91204845	-	RBE_0030	-	hypothetical protein
31	 31.69	0	31151..31819	+	222	91204846	-	RBE_0031	-	hypothetical protein
32	 30.98	0	32280..33596	+	438	91204847	folKP	RBE_0032	-	folate synthesis bifunctional protein
33	 32.54	0	33605..34108	+	167	91204848	folA	RBE_0033	-	dihydrofolate reductase
34	 32.69	0	34126..35208	+	360	91204849	recF	RBE_0034	-	recombination protein F
35	 28.28	0	35526..36218	-	230	91204850	-	RBE_0035	-	hypothetical protein
36	 29.40	0	36224..36985	-	253	91204851	-	RBE_0036	-	TPR repeat-containing protein
37	 35.05	0	37074..38411	-	445	91204852	trmE	RBE_0037	-	tRNA modification GTPase TrmE
38	 31.27	0	38671..43026	+	1451	91204853	-	RBE_0038	-	NAD-specific glutamate dehydrogenase
39	 23.17	-2	43001..43423	+	140	91204854	-	RBE_0039	-	NAD-specific glutamate dehydrogenase
40	 24.37	-1	43426..43782	+	118	91204855	-	RBE_0040	-	hypothetical protein
41	 30.19	0	43992..44309	+	105	91204856	-	RBE_0041	-	hypothetical protein
42	 34.05	0	44607..45860	+	417	91204857	proP5	RBE_0042	-	proline/betaine transporter
43	 25.70	-1	45964..47037	+	357	91204858	-	RBE_0043	-	hypothetical protein
44	 35.07	0	47044..47445	-	133	91204859	pntA2	RBE_0044	-	NAD(P) transhydrogenase subunit alpha
45	 36.62	+1	47604..48728	-	374	91204860	pntA1	RBE_0045	-	NAD(P) transhydrogenase subunit alpha
46	 27.44	0	48797..49441	+	214	91204861	lolA	RBE_0046	-	Outer membrane lipoprotein-sorting protein LolA
47	 30.45	0	49678..51204	+	508	91204862	dnaX	RBE_0047	-	DNA polymerase III subunits gamma and tau
48	 34.57	0	51216..51539	+	107	91204863	-	RBE_0048	-	hypothetical protein
49	 31.56	0	51596..51820	-	74	91204864	-	RBE_0049	-	hypothetical protein
50	 32.84	0	51841..52653	-	270	91204865	-	RBE_0050	-	transposase
51	 29.33	0	52737..53261	-	174	91204866	-	RBE_0051	-	hypothetical protein
52	 31.43	0	53258..53887	-	209	91204867	lipB	RBE_0052	-	lipoyltransferase
53	 35.17	0	53909..54397	-	162	91204868	greA	RBE_0053	-	transcription elongation factor GreA
54	 27.15	-1	54486..55100	+	204	91204869	sec59	RBE_0054	-	dolichol kinase
55	 28.83	0	55104..56903	+	599	91204870	dnaG	RBE_0055	-	DNA primase
56	 33.90	0	56986..58911	+	641	91204871	rpoD	RBE_0056	-	RNA polymerase sigma factor RpoD
57	 28.81	0	58940..60463	+	507	91204872	-	RBE_0057	-	Type I restriction-modification system methyltransferase subunit
58	 28.27	0	60427..60999	+	190	91204873	-	RBE_0058	-	Type I restriction-modification system methyltransferase subunit
59	 26.88	-1	61085..61564	+	159	91204874	-	RBE_0059	-	hypothetical protein
60	 35.23	0	61641..62378	+	245	91204875	truA	RBE_0060	-	tRNA pseudouridine synthase A
61	 26.85	-1	62434..62757	+	107	91204876	-	RBE_0061	-	hypothetical protein
62	 28.76	0	62878..63183	+	101	91204877	-	RBE_0062	-	hypothetical protein
63	 29.51	0	63298..64239	-	313	91204878	-	RBE_0063	-	nucleotidyltransferase
64	 37.94	+1	64239..64868	-	209	91204879	-	RBE_0064	-	hypothetical protein
65	 29.10	0	64917..65837	-	306	91204880	-	RBE_0065	-	transposase
66	 36.38	+1	66072..67319	-	415	91204881	proP6	RBE_0066	-	proline/betaine transporter
67	 30.66	0	67519..68979	+	486	91204882	-	RBE_0067	-	hypothetical protein
68	 27.83	0	68985..69911	-	308	91204883	-	RBE_0068	-	hypothetical protein
69	 24.11	-1	69908..70525	-	205	91204884	-	RBE_0069	-	hypothetical protein
70	 25.40	-1	70564..72075	-	503	91204885	-	RBE_0070	-	hypothetical protein
71	 35.88	+1	72154..74787	+	877	91204886	alaS	RBE_0071	-	alanyl-tRNA synthetase
72	 30.73	0	75001..75576	+	191	91204887	-	RBE_0072	-	transposase
73	 29.11	0	75585..76034	+	149	91204888	-	RBE_0073	-	hypothetical protein
74	 33.02	0	76048..79566	-	1172	91204889	dnaE	RBE_0074	-	DNA polymerase III subunit alpha
75	 31.03	0	79731..81035	-	434	91204890	udg	RBE_0075	-	UDP-glucose 6-dehydrogenase
76	 26.33	-1	81130..83643	+	837	91204891	-	RBE_0076	-	hypothetical protein
77	 31.67	0	83645..84904	+	419	91204892	ampG3	RBE_0077	-	AmpG
78	 26.64	-1	84980..85726	+	248	91204893	tatC	RBE_0078	-	Sec-independent protein translocase protein TatC
79	 34.97	0	85713..86993	+	426	91204894	serS	RBE_0079	-	seryl-tRNA synthetase
80	 28.84	0	87297..89720	+	807	91204895	virB4-2	RBE_0080	-	VirB4
81	 33.51	0	89921..93397	+	1158	91204896	-	RBE_0081	-	hypothetical protein
82	 28.49	0	93401..94309	+	302	91204897	terC	RBE_0082	-	tellurium resistance protein TerC
83	 31.56	0	94354..95085	+	243	91204898	-	RBE_0083	-	hypothetical protein
84	 30.93	0	95239..96900	+	553	91204899	-	RBE_0084	-	putative methyltransferase
85	 28.48	0	97022..97639	+	205	91204900	nuoJ	RBE_0085	-	NADH dehydrogenase subunit J
86	 31.21	0	97617..97946	+	109	91204901	nuoK	RBE_0086	-	NADH dehydrogenase subunit K
87	 33.85	0	97949..99877	+	642	91204902	nuoL1	RBE_0087	-	NADH dehydrogenase subunit L
88	 31.99	0	100127..101611	+	494	91204903	nuoM	RBE_0088	-	NADH dehydrogenase subunit M
89	 29.44	0	102092..102682	+	196	91204904	ccmA	RBE_0089	-	cytochrome c biogenesis protein CcmA
90	 35.15	0	102893..103333	+	146	91204905	-	RBE_0090	-	Strees induced DNA-binding Dps family protein
91	 37.25	+1	103423..104802	+	459	91204906	lpdA1	RBE_0091	-	dihydrolipoamide dehydrogenase
92	 28.42	0	104813..105382	+	189	91204907	atpH	RBE_0092	-	F0F1 ATP synthase subunit delta
93	 37.30	+1	105472..106227	+	251	91204908	-	RBE_0093	-	ATP synthase alpha chain
94	 36.42	+1	106136..107011	+	291	91204909	-	RBE_0094	-	ATP synthase alpha chain
95	 29.41	0	107174..108040	+	288	91204910	atpG	RBE_0095	-	F0F1 ATP synthase subunit gamma
96	 41.70	+2	108215..109636	+	473	91204911	atpD	RBE_0096	-	F0F1 ATP synthase subunit beta
97	 33.94	0	109820..110146	+	108	91204912	atpC	RBE_0097	-	F0F1 ATP synthase subunit epsilon
98	 36.12	+1	110491..113148	+	885	91204913	acnA	RBE_0098	-	aconitate hydratase
99	 32.38	0	113175..114014	+	279	91204914	-	RBE_0099	-	hypothetical protein
100	 30.53	0	114026..114382	+	118	91204915	-	RBE_0100	-	hypothetical protein
31.34	MEAN

3.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.