IslandPath Analysis: Salmonella enterica subsp. enterica serovar Typhi str. Ty2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.24   STD DEV: 5.57
Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome - 1..4791961
4318 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	190..255	+	21	29140544	thrL	t0001	-	thr operon leader peptide
2	 56.15	0	337..2799	+	820	29140545	thrA	t0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 57.85	+1	2801..3730	+	309	29140546	thrB	t0003	-	homoserine kinase
4	 55.94	0	3734..5020	+	428	29140547	thrC	t0004	-	threonine synthase
5	 50.39	0	5114..5887	-	257	29140548	yaaA	t0005	-	hypothetical protein
6	 55.70	0	5966..7396	-	476	29140549	yaaJ	t0006	-	putative amino-acid transport protein
7	 53.77	0	7665..8618	+	317	29140550	talB	t0007	-	transaldolase B
8	 56.01	0	8729..9319	+	196	29140551	mogA	t0008	-	molybdenum cofactor biosynthesis protein
9	 53.79	0	9376..9942	-	188	29140552	yaaH	t0009	-	hypothetical protein
10	 53.92	0	10092..10805	-	237	29140553	-	t0010	-	hypothetical protein
11	 49.38	0	10841..11245	-	134	29140554	yaaI	t0011	-	hypothetical protein
12	 52.74	0	11594..13510	+	638	29140555	dnaK	t0012	-	molecular chaperone DnaK
13	 54.12	0	13596..14735	+	379	29140556	dnaJ	t0013	-	chaperone protein DnaJ
14	 41.03	-2	15020..15967	+	315	29140557	-	t0014	-	putative regulatory protein
15	 40.00	-2	16094..16438	+	114	29140558	-	t0015	-	hypothetical protein
16	 50.94	0	16499..17032	-	177	29140559	-	t0016	-	hypothetical protein
17	 38.29	-2	17049..17492	-	147	29140560	-	t0017	-	hypothetical protein
18	 51.62	0	17873..19972	+	699	29140561	-	t0018	-	putative chitinase
19	 55.30	0	20004..21155	+	383	29140562	-	t0019	-	hypothetical protein
20	 54.05	0	21198..23060	+	620	29140563	-	t0020	-	hypothetical protein
21	 46.38	-1	23341..24045	+	234	29140564	-	t0021	-	hypothetical protein
22	 52.12	0	24473..25015	+	180	29140565	bcfA	t0022	-	fimbrial subunit
23	 51.24	0	25116..25802	+	228	29140566	bcfB	t0023	-	fimbrial chaperone
24	 50.40	0	28429..29436	+	335	29140567	bcfD	t0025	-	fimbrial subunit
25	 47.62	0	29437..29982	+	181	29140568	bcfE	t0026	-	fimbrial subunit
26	 55.88	0	29998..30516	+	172	29140569	bcfF	t0027	-	fimbrial subunit
27	 54.18	0	30509..31213	+	234	29140570	bcfG	t0028	-	fimbrial chaperone
28	 54.49	0	31278..32123	+	281	29140571	-	t0029	-	hypothetical protein
29	 41.32	-1	32162..32449	+	95	29140572	-	t0030	-	hypothetical protein
30	 36.89	-2	32549..32998	-	149	29140573	-	t0031	-	hypothetical protein
31	 38.45	-2	33368..34363	+	331	29140574	-	t0032	-	LysR family transcriptional regulator
32	 38.24	-2	34511..34816	-	101	29140575	-	t0033	-	putative transcriptional regulator
33	 45.90	-1	35339..37057	+	572	29140576	-	t0034	-	sulfatase
34	 46.69	0	37103..38674	-	523	29140577	-	t0035	-	putative secreted 5'-nucleotidase
35	 43.96	-1	38773..39534	-	253	29140578	-	t0036	-	hypothetical protein
36	 52.54	0	40128..41621	+	497	29140579	-	t0037	-	putative secreted sulfatase
37	 49.54	0	41720..42910	+	396	29140580	-	t0038	-	sulfatase regulatory protein
38	 50.00	0	43198..44181	+	327	29140581	-	t0039	-	hypothetical protein
39	 50.23	0	44308..46023	+	571	29140582	-	t0040	-	sulfatase
40	 56.38	0	46186..47352	+	388	29140583	nhaA	t0041	-	pH-dependent sodium/proton antiporter
41	 50.67	0	47414..48313	+	299	29140584	nhaR	t0042	-	transcriptional activator NhaR
42	 54.26	0	48368..50407	-	679	29140585	-	t0043	-	putative glycosyl hydrolase
43	 48.69	0	50447..51820	-	457	29140586	-	t0044	-	putative transport protein
44	 46.59	-1	52277..52540	-	87	29140587	rpsT	t0045	-	30S ribosomal protein S20
45	 47.69	0	52646..52861	+	71	29140588	-	t0046	-	hypothetical protein
46	 56.55	0	52869..53807	+	312	29140589	ribF	t0047	-	bifunctional riboflavin kinase/FMN adenylyltransferase
47	 54.85	0	53852..56686	+	944	29140590	ileS	t0048	-	isoleucyl-tRNA synthetase
48	 51.70	0	56686..57186	+	166	29140591	lspA	t0049	-	lipoprotein signal peptidase
49	 54.67	0	57341..57790	+	149	29140592	fkpB	t0050	-	FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase
50	 56.78	0	57793..58743	+	316	29140593	ispH	t0051	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
51	 48.55	0	58943..60145	+	400	29140594	-	t0052	-	hypothetical protein
52	 56.35	0	60161..61081	+	306	29140595	yaaF	t0053	-	ribonucleoside hydrolase RihC
53	 48.47	0	61103..61789	-	228	29140596	citB	t0054	-	transcriptional regulatory protein CitB
54	 47.84	0	61791..63410	-	539	29140597	citA	t0055	-	sensor kinase CitA
55	 63.52	+2	63545..64846	-	433	29140598	oadB	t0056	-	oxaloacetate decarboxylase beta chain
56	 64.02	+2	64859..66634	-	591	29140599	oadA	t0057	-	pyruvate carboxylase subunit B
57	 56.25	0	66650..66889	-	79	29140600	oadG	t0058	-	oxaloacetate decarboxylase subunit gamma
58	 49.22	0	67048..68388	-	446	29140601	citC	t0059	-	citrate-sodium symporter
59	 53.54	0	68633..69676	+	347	29140602	citC	t0060	-	[citrate (Pro-3S)-lyase] ligase
60	 56.46	0	69706..69999	+	97	29140603	citD	t0061	-	citrate lyase subunit gamma
61	 55.40	0	69996..70865	+	289	29140604	citE	t0062	-	citrate lyase beta chain
62	 54.96	0	70876..72396	+	506	29140605	citF	t0063	-	citrate lyase alpha chain
63	 55.98	0	72396..72947	+	183	29140606	citX	t0064	-	citx protein
64	 54.79	0	72925..73833	+	302	29140607	citG	t0065	-	CitG protein
65	 56.69	0	74013..74834	+	273	29140608	dapB	t0066	-	dihydrodipicolinate reductase
66	 55.61	0	75687..76835	+	382	29140609	carA	t0067	-	carbamoyl phosphate synthase small subunit
67	 58.95	+1	76851..80078	+	1075	29140610	carB	t0068	-	carbamoyl phosphate synthase large subunit
68	 46.46	-1	80352..80747	+	131	29140611	caiF	t0069	-	DNA-binding transcriptional activator CaiF
69	 55.78	0	80825..81421	-	198	29140612	caiE	t0070	-	carnitine operon protein CaiE
70	 56.49	0	81533..82318	-	261	29140613	caiD	t0071	-	carnitinyl-CoA dehydratase
71	 51.09	0	82372..83925	-	517	29140614	caiC	t0072	-	putative crotonobetaine/carnitine-CoA ligase
72	 53.61	0	83988..85205	-	405	29140615	caiB	t0073	-	crotonobetainyl-CoA:carnitine CoA-transferase
73	 52.49	0	85317..86459	-	380	29140616	caiA	t0074	-	crotonobetainyl-CoA dehydrogenase
74	 53.75	0	86494..88011	-	505	29140617	caiT	t0075	-	L-carnitine/gamma-butyrobetaine antiporter
75	 52.01	0	88492..89262	+	256	29140618	fixA	t0076	-	putative electron transfer flavoprotein FixA
76	 59.34	+1	89278..90219	+	313	29140619	fixB	t0077	-	putative electron transfer flavoprotein FixB
77	 55.48	0	90269..91555	+	428	29140620	fixC	t0078	-	putative oxidoreductase FixC
78	 53.82	0	91552..91839	+	95	29140621	fixX	t0079	-	ferredoxin like protein FixX
79	 54.14	0	91987..93327	+	446	29140622	yaaU	t0080	-	putative metabolite transport protein
80	 48.48	0	93416..93646	+	76	29140623	-	t0081	-	putative lipoprotein
81	 46.57	-1	93931..94353	+	140	29140624	-	t0082	-	hypothetical protein
82	 47.42	0	94577..94867	-	96	29140625	-	t0083	-	hypothetical protein
83	 38.46	-2	95077..95271	+	64	29140626	-	t0084	-	hypothetical protein
84	 48.44	0	95765..95989	+	74	29140627	-	t0085	-	hypothetical protein
85	 47.20	0	96041..97345	+	434	29140628	-	t0086	-	puatative sulfatase
86	 40.38	-2	97342..97653	+	103	29140629	-	t0087	-	hypothetical protein
87	 53.48	0	98060..98590	+	176	29140630	yabF	t0088	-	glutathione-regulated potassium-efflux system ancillary protein KefF
88	 57.86	+1	98583..100445	+	620	29140631	kefC	t0089	-	glutathione-regulated potassium-efflux system protein KefC
89	 53.54	0	100644..101123	+	159	29140632	folA	t0090	-	dihydrofolate reductase
90	 55.48	0	101219..102067	-	282	29140633	apaH	t0091	-	diadenosine tetraphosphatase
91	 53.97	0	102078..102455	-	125	29140634	apaG	t0092	-	ApaG
92	 52.68	0	102458..103279	-	273	29140635	ksgA	t0093	-	dimethyladenosine transferase
93	 58.79	+1	103276..104265	-	329	29140636	pdxA	t0094	-	4-hydroxythreonine-4-phosphate dehydrogenase
94	 54.16	0	104265..105551	-	428	29140637	surA	t0095	-	peptidyl-prolyl cis-trans isomerase SurA
95	 52.91	0	105605..107959	-	784	29140638	imp	t0096	-	organic solvent tolerance protein
96	 54.00	0	108213..109025	+	270	29140639	djlA	t0097	-	DNA-J like membrane chaperone protein
97	 57.58	0	109120..109779	-	219	29140640	rluA	t0098	-	23S rRNA/tRNA pseudouridine synthase A
98	 57.03	0	109791..112697	-	968	29140641	hepA	t0099	-	ATP-dependent helicase HepA
99	 56.59	0	112871..115222	-	783	29140642	polB	t0100	-	DNA polymerase II
100	 45.80	-1	115562..116002	-	146	29140643	-	t0101	-	putative IS element transposase
52.24	MEAN

5.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.