IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis L550



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.96   STD DEV: 2.80
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2, complete sequence - 1..317336
242 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.92	-1	139..891	+	250	116329557	-	LBL_4000	-	ParA-like protein
2	 35.34	-2	875..1720	+	281	116329558	-	LBL_4001	-	ParB-like protein
3	 39.51	0	2098..2988	+	296	116329559	-	LBL_4002	-	hypothetical protein
4	 46.18	+1	3014..5527	+	837	116329560	-	LBL_4003	-	hypothetical protein
5	 40.44	0	5538..6410	+	290	116329561	metF	LBL_4004	-	5,10-methylenetetrahydrofolate reductase
6	 41.21	0	6766..7590	-	274	116329562	-	LBL_4005	-	hypothetical protein
7	 42.16	0	7901..8761	+	286	116329563	-	LBL_4006	-	HAD family phosphatase
8	 38.25	0	8732..9016	-	94	116329564	-	LBL_4007	-	hypothetical protein
9	 41.89	0	9054..9929	+	291	116329565	hemA	LBL_4008	-	glutamyl-tRNA reductase
10	 43.59	0	9914..11542	+	542	116329566	hemCD	LBL_4009	-	bifunctional porphobilinogen deaminase/uroporphyrinogen synthase
11	 44.03	+1	11511..12464	+	317	116329567	hemB	LBL_4010	-	delta-aminolevulinic acid dehydratase
12	 47.44	+2	12461..13786	+	441	116329568	hemL	LBL_4011	-	glutamate-1-semialdehyde aminotransferase
13	 41.17	0	13786..14691	+	301	116329569	-	LBL_4012	-	sensor protein of a two component response regulator
14	 44.59	+1	14693..15385	+	230	116329570	-	LBL_4013	-	response regulator of a two component regulatory system
15	 42.03	0	15375..16397	+	340	116329571	hemE	LBL_4014	-	uroporphyrinogen decarboxylase
16	 42.00	0	16394..17743	+	449	116329572	hemN	LBL_4015	-	coproporphyrinogen III oxidase
17	 43.11	0	17843..18793	+	316	116329573	-	LBL_4016	-	hypothetical protein
18	 44.32	+1	18800..20101	+	433	116329574	hemY	LBL_4017	-	protoporphyrinogen oxidase
19	 41.24	0	20091..21191	-	366	116329575	hemH	LBL_4018	-	ferrochelatase
20	 41.01	0	21298..22404	-	368	116329576	-	LBL_4019	-	hypothetical protein
21	 43.90	+1	22608..23525	+	305	116329577	-	LBL_4020	-	ParA-like protein
22	 41.24	0	23518..24225	+	235	116329578	-	LBL_4021	-	ParB-like protein
23	 43.78	+1	24254..24856	+	200	116329579	-	LBL_4022	-	flavoprotein
24	 39.29	0	25636..26391	+	251	116329580	-	LBL_4023	-	hypothetical protein
25	 32.74	-2	27429..28610	-	393	116329581	-	LBL_4025	-	hypothetical protein
26	 38.38	0	29782..30951	-	389	116329582	-	LBL_4027	-	hypothetical protein
27	 43.09	0	31048..31416	+	122	116329583	-	LBL_4028	-	cyclic nucleotide-binding protein
28	 42.57	0	31892..32638	+	248	116329584	-	LBL_4029	-	Short chain dehydrogenase
29	 39.49	0	32614..33165	+	183	116329585	wzb	LBL_4030	-	protein-tyrosine-phosphatase
30	 45.15	+1	33188..34456	+	422	116329586	ndh	LBL_4031	-	NADH dehydrogenase
31	 43.04	0	34607..34987	-	126	116329587	-	LBL_4032	-	hypothetical protein
32	 43.78	+1	35409..36212	+	267	116329588	-	LBL_4033	-	Short chain dehydrogenase
33	 42.55	0	36222..36644	+	140	116329589	-	LBL_4034	-	hypothetical protein
34	 41.40	0	36706..37077	+	123	116329590	-	LBL_4035	-	hypothetical protein
35	 36.28	-1	37857..39113	+	418	116329591	-	LBL_4036	-	transposase ISLbp1
36	 39.02	0	39193..40248	+	351	116329592	-	LBL_4037	-	hypothetical protein
37	 42.08	0	40617..41942	+	441	116329593	-	LBL_4038	-	lipoprotein
38	 42.53	0	42990..43598	+	202	116329594	-	LBL_4039	-	hypothetical protein
39	 45.24	+1	45365..46372	+	335	116329595	-	LBL_4042	-	MoxR-like ATPase
40	 41.88	0	46378..47208	+	276	116329596	-	LBL_4043	-	hypothetical protein
41	 39.54	0	47205..48074	+	289	116329597	-	LBL_4044	-	hypothetical protein
42	 45.15	+1	48071..49009	+	312	116329598	batA	LBL_4045	-	BatA
43	 42.15	0	49006..50049	+	347	116329599	batB	LBL_4046	-	BatB
44	 43.06	0	50046..50744	+	232	116329600	batC	LBL_4047	-	BatC
45	 41.68	0	50738..52378	+	546	116329601	batD	LBL_4048	-	BatD
46	 41.11	0	52375..54186	+	603	116329602	-	LBL_4049	-	heat shock protein 90
47	 39.51	0	54205..54771	+	188	116329603	-	LBL_4050	-	hypothetical protein
48	 39.32	0	54752..55252	-	166	116329604	-	LBL_4051	-	hypothetical protein
49	 37.65	-1	55739..55900	+	53	116329605	-	LBL_4052	-	lipoprotein
50	 41.11	0	55962..56951	+	329	116329606	-	LBL_4053	-	hypothetical protein
51	 37.43	-1	57603..57944	-	113	116329607	-	LBL_4054	-	antagonist of anti-sigma factor
52	 42.09	0	59409..59876	+	155	116329608	-	LBL_4056	-	hypothetical protein
53	 43.63	0	60259..60909	+	216	116329609	-	LBL_4057	-	hypothetical protein
54	 42.80	0	60964..61776	-	270	116329610	-	LBL_4058	-	Fatty-acid desaturase
55	 41.01	0	63279..63929	+	216	116329611	-	LBL_4059	-	dinucleotide-binding protein
56	 39.96	0	64305..64832	+	175	116329612	-	LBL_4060	-	hypothetical protein
57	 45.43	+1	65025..65975	-	316	116329613	-	LBL_4061	-	periplasmic protein kinase involved in LAO amino acid transport and metabolism
58	 45.80	+1	65996..68008	-	670	116329614	meaA	LBL_4062	-	methylmalonyl-CoA mutase
59	 39.52	0	68118..69458	+	446	116329615	-	LBL_4063	-	hypothetical protein
60	 39.78	0	69523..70251	+	242	116329616	-	LBL_4064	-	hypothetical protein
61	 33.60	-2	71147..72622	+	491	116329617	-	LBL_4065	-	hypothetical protein
62	 38.97	0	73089..73496	+	135	116329618	-	LBL_4066	-	hypothetical protein
63	 40.14	0	73627..74331	+	234	116329619	-	LBL_4067	-	LipL45-related lipoprotein
64	 39.30	0	74871..76478	+	535	116329620	-	LBL_4068	-	GGDEF family protein
65	 36.71	-1	78661..79074	+	137	116329621	-	LBL_4070	-	hypothetical protein
66	 39.09	0	79121..80215	+	364	116329622	-	LBL_4071	-	transposase IS1533
67	 36.35	-1	81214..81909	-	231	116329623	-	LBL_4072	-	AcrR family transcriptional regulator
68	 33.08	-2	81958..83160	-	400	116329624	-	LBL_4073	-	AraC family transcription regulator
69	 37.81	-1	85508..86647	-	379	116329625	-	LBL_4076	-	AraC family transcription regulator
70	 35.42	-1	92525..93529	-	334	116329626	-	LBL_4083	-	hypothetical protein
71	 38.90	0	93526..94980	-	484	116329627	-	LBL_4084	-	hypothetical protein
72	 40.40	0	94982..96466	-	494	116329628	-	LBL_4085	-	regulator of sigma subunit
73	 40.70	0	102194..103198	+	334	116329629	-	LBL_4092	-	hypothetical protein
74	 45.15	+1	103605..105161	+	518	116329630	-	LBL_4093	-	FAD-dependent dehydrogenase
75	 39.58	0	105305..105544	-	79	116329631	-	LBL_4094	-	hypothetical protein
76	 42.97	0	110655..111401	-	248	116329632	-	LBL_4098	-	hypothetical protein
77	 39.66	0	111446..112930	-	494	116329633	-	LBL_4099	-	polysaccharide deacetylase
78	 41.84	0	113004..113567	-	187	116329634	-	LBL_4100	-	TPR repeat-containing lipoprotein
79	 40.70	0	113590..114105	-	171	116329635	-	LBL_4101	-	hypothetical protein
80	 41.57	0	115011..115787	+	258	116329636	-	LBL_4102	-	sugar phosphatase
81	 37.61	-1	116302..116745	+	147	116329637	-	LBL_4103	-	hypothetical protein
82	 40.90	0	116807..117784	+	325	116329638	-	LBL_4104	-	ArsR family transcriptional regulator
83	 46.15	+1	117787..119097	+	436	116329639	sahH	LBL_4105	-	S-adenosyl-L-homocysteine hydrolase
84	 44.00	+1	119173..119472	+	99	116329640	-	LBL_4106	-	hypothetical protein
85	 45.35	+1	119519..123262	+	1247	116329641	metH	LBL_4107	-	B12-dependent methionine synthase
86	 36.97	-1	123312..123641	+	109	116329642	-	LBL_4108	-	hypothetical protein
87	 42.56	0	123971..124891	-	306	116329643	-	LBL_4109	-	hypothetical protein
88	 44.27	+1	125004..126338	+	444	116329644	pfkA	LBL_4110	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
89	 40.88	0	126453..128201	-	582	116329645	-	LBL_4111	-	Serine phosphatase RsbU, regulator of sigma subunit
90	 44.29	+1	128365..129240	-	291	116329646	argB	LBL_4112	-	acetylglutamate kinase
91	 42.46	0	129320..130075	+	251	116329647	-	LBL_4113	-	Short chain dehydrogenase
92	 40.36	0	130205..131926	-	573	116329648	-	LBL_4114	-	protease
93	 40.83	0	131927..132406	-	159	116329649	-	LBL_4115	-	bacterioferritin comigratory protein
94	 42.90	0	133354..133698	+	114	116329650	-	LBL_4116	-	hypothetical protein
95	 43.87	+1	133765..134865	+	366	116329651	-	LBL_4117	-	hypothetical protein
96	 39.09	0	136412..137506	-	364	116329652	-	LBL_4119	-	transposase IS1533
97	 37.35	-1	138643..139539	-	298	116329653	-	LBL_4120	-	XerD related protein
98	 40.37	0	139655..140194	-	179	116329654	aroK	LBL_4121	-	shikimate kinase
99	 40.02	0	140191..141042	-	283	116329655	-	LBL_4122	-	Signal transduction protein
100	 42.80	0	141049..141555	-	168	116329656	-	LBL_4123	-	chemotaxis protein
40.96	MEAN

2.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.