IslandPath Analysis: Staphylococcus haemolyticus JCSC1435



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.76   STD DEV: 3.62
Staphylococcus haemolyticus JCSC1435, complete genome - 1..2685015
2676 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.51	0	508..1863	+	451	70725002	dnaA	SH0001	-	chromosomal replication initiation protein
2	 32.98	0	2164..3297	+	377	70725003	dnaN	SH0002	-	DNA polymerase III subunit beta
3	 37.61	+1	3676..3909	+	77	70725004	-	SH0003	-	hypothetical protein
4	 34.86	0	3906..5021	+	371	70725005	recF	SH0004	-	recombination protein F
5	 36.64	+1	5031..6965	+	644	70725006	gyrB	SH0005	-	DNA gyrase (topoisomerase II) subunit B
6	 37.44	+1	7063..9762	+	899	70725007	gyrA	SH0006	-	DNA gyrase (topoisomerase II) subunit A
7	 36.04	0	9864..10565	-	233	70725008	-	SH0007	-	hypothetical protein
8	 36.75	+1	11331..12617	+	428	70725009	serS	SH0008	-	seryl-tRNA synthetase
9	 36.93	+1	13067..13762	+	231	70725010	-	SH0009	-	hypothetical protein
10	 33.64	0	13759..14088	+	109	70725011	-	SH0010	-	hypothetical protein
11	 35.91	0	14385..15353	+	322	70725012	-	SH0011	-	hypothetical protein
12	 30.92	0	15492..16403	+	303	70725013	-	SH0012	-	hypothetical protein
13	 36.89	+1	16431..18398	+	655	70725014	-	SH0013	-	hypothetical protein
14	 31.10	0	18395..18841	+	148	70725015	rplI	SH0014	-	50S ribosomal protein L9
15	 38.33	+1	19048..20448	+	466	70725016	dnaC	SH0015	-	replicative DNA helicase
16	 36.92	+1	20726..22009	+	427	70725017	purA	SH0016	-	adenylosuccinate synthetase
17	 38.89	+1	23176..23877	+	233	70725018	vicR	SH0017	-	response regulator, VicR
18	 36.18	0	23890..25716	+	608	70725019	vicK	SH0018	-	signal transduction two-component sensor histidine kinase, VicK
19	 34.91	0	25706..27037	+	443	70725020	-	SH0019	-	hypothetical protein
20	 34.60	0	27038..27829	+	263	70725021	-	SH0020	-	hypothetical protein
21	 34.38	0	27853..27948	+	31	70725022	-	SH0021	-	hypothetical protein
22	 34.46	0	28097..28897	+	266	70725023	-	SH0022	-	hypothetical protein
23	 35.42	0	29302..29781	+	159	70725024	orfX	SH0023	-	hypothetical protein
24	 28.49	-1	29835..30020	+	61	70725025	-	SH0024	-	hypothetical protein
25	 33.78	0	30130..30804	-	224	70725026	tnp	SH0025	-	transposase for IS431mec
26	 27.98	-1	30884..31855	+	323	70725027	-	SH0026	-	hypothetical protein
27	 26.26	-1	32117..32215	-	32	70725028	-	SH0027	-	hypothetical protein
28	 30.95	0	32399..32566	+	55	70725029	-	SH0028	-	hypothetical protein
29	 25.00	-2	32834..32977	+	47	70725030	-	SH0029	-	hypothetical protein
30	 29.69	0	33019..34335	-	438	70725031	tnp	SH0030	-	transposase for ISSha1
31	 37.79	+1	34852..35547	-	231	70725032	-	SH0031	-	hypothetical protein
32	 36.59	+1	35522..38191	-	889	70725033	-	SH0032	-	hypothetical protein
33	 36.73	+1	38459..40135	+	558	70725034	kdpA	SH0033	-	potassium-transporting ATPase subunit A
34	 39.76	+1	40154..42175	+	673	70725035	kdpB	SH0034	-	hypothetical protein
35	 36.56	+1	42191..42748	+	185	70725036	kdpC	SH0035	-	hypothetical protein
36	 27.21	-1	42776..42922	+	48	70725037	-	SH0036	-	hypothetical protein
37	 33.65	0	43112..43429	+	105	70725038	-	SH0037	-	hypothetical protein
38	 33.33	0	43499..43651	+	50	70725039	-	SH0038	-	hypothetical protein
39	 28.25	-1	43681..44172	+	163	70725040	-	SH0039	-	hypothetical protein
40	 35.61	0	44388..49079	+	1563	70725041	-	SH0040	-	hypothetical protein
41	 26.14	-1	49188..50702	+	504	70725042	-	SH0041	-	hypothetical protein
42	 24.24	-2	50695..52014	+	439	70725043	-	SH0042	-	hypothetical protein
43	 34.18	0	52978..53925	-	315	70725044	-	SH0043	-	hypothetical protein
44	 24.68	-2	54061..54927	-	288	70725045	-	SH0044	-	hypothetical protein
45	 27.88	-1	54914..56104	-	396	70725046	-	SH0045	-	hypothetical protein
46	 34.03	0	56315..56458	+	47	70725047	tnp	SH0046	-	transposase for IS431mec
47	 31.18	0	56624..56716	+	30	70725048	tnp	SH0047	-	transposase for IS431mec
48	 33.73	0	56738..56989	+	83	70725049	tnp	SH0048	-	transposase for IS431mec
49	 29.84	0	57049..57477	-	142	70725050	-	SH0049	-	hypothetical protein
50	 26.02	-1	57558..58487	+	309	70725051	-	SH0050	-	hypothetical protein
51	 23.23	-2	58521..58619	+	32	70725052	-	SH0051	-	hypothetical protein
52	 26.04	-1	58649..60637	+	662	70725053	-	SH0052	-	hypothetical protein
53	 34.23	0	60832..61941	+	369	70725054	-	SH0053	-	hypothetical protein
54	 32.79	0	61934..62302	+	122	70725055	-	SH0054	-	hypothetical protein
55	 32.16	0	62302..63918	+	538	70725056	-	SH0055	-	hypothetical protein
56	 33.69	0	64143..65819	+	558	70725057	ccrC	SH0056	-	staphylococcal casette chromosome site specific recombinase CcrC
57	 28.32	-1	66170..66508	+	112	70725058	-	SH0057	-	hypothetical protein
58	 33.65	0	66602..66913	+	103	70725059	-	SH0058	-	hypothetical protein
59	 35.12	0	66931..67434	+	167	70725060	-	SH0059	-	hypothetical protein
60	 28.83	-1	67448..67669	+	73	70725061	-	SH0060	-	hypothetical protein
61	 30.34	0	67807..68373	+	188	70725062	-	SH0061	-	hypothetical protein
62	 35.51	0	68450..71569	-	1039	70725063	hsdR	SH0062	-	type I restriction-modification system restriction subunit
63	 25.82	-1	71553..72776	-	407	70725064	hsdS	SH0063	-	hypothetical protein
64	 33.53	0	72766..74280	-	504	70725065	hsdM	SH0064	-	type I restriction-modification system DNA methylase
65	 29.63	0	74430..74537	+	35	70725066	-	SH0065	-	hypothetical protein
66	 33.33	0	74494..74562	+	22	70725067	-	SH0066	-	hypothetical protein
67	 24.86	-2	74710..75429	+	239	70725068	-	SH0067	-	hypothetical protein
68	 25.98	-1	75426..76322	-	298	70725069	-	SH0068	-	hypothetical protein
69	 38.27	+1	76600..78018	-	472	70725070	-	SH0069	-	hypothetical protein
70	 38.52	+1	78107..78646	-	179	70725071	-	SH0070	-	hypothetical protein
71	 33.79	0	79186..80511	-	441	70725072	-	SH0071	-	hypothetical protein
72	 30.02	0	80495..82213	-	572	70725073	malL	SH0072	-	oligosaccharide alpha-1,6-glucosidase
73	 31.83	0	82302..83300	-	332	70725074	-	SH0073	-	hypothetical protein
74	 29.22	0	83480..83965	-	161	70725075	-	SH0074	-	lactose operon transcription activator
75	 24.81	-2	84288..84944	+	218	70725076	-	SH0075	-	hypothetical protein
76	 36.34	0	85196..85561	-	121	70725077	tnp	SH0076	-	transposase for IS431mec
77	 34.13	0	85480..85857	-	125	70725078	tnp	SH0077	-	transposase for IS431mec
78	 27.40	-1	86050..86622	-	190	70725079	-	SH0078	-	hypothetical protein
79	 27.64	-1	86765..86887	+	40	70725080	-	SH0079	-	hypothetical protein
80	 29.92	0	86906..88222	-	438	70725081	tnp	SH0080	-	transposase for ISSha1
81	 30.53	0	88421..88990	+	189	70725082	-	SH0081	-	hypothetical protein
82	 31.51	0	88987..90081	+	364	70725083	-	SH0082	-	hypothetical protein
83	 29.58	0	90323..90535	+	70	70725084	-	SH0083	-	hypothetical protein
84	 27.45	-1	90523..90777	+	84	70725085	-	SH0084	-	hypothetical protein
85	 22.99	-2	91146..92876	-	576	70725086	-	SH0085	-	hypothetical protein
86	 24.45	-2	92860..94356	-	498	70725087	-	SH0086	-	hypothetical protein
87	 34.37	0	94745..95419	-	224	70725088	tnp	SH0087	-	transposase for IS431mec
88	 29.17	0	95677..95844	+	55	70725089	-	SH0088	-	hypothetical protein
89	 33.47	0	96761..97504	+	247	70725090	-	SH0089	-	hypothetical protein
90	 29.14	0	97601..98029	+	142	70725091	-	SH0090	-	hypothetical protein
91	 30.59	0	98075..100081	-	668	70725092	mecA	SH0091	-	penicillin binding protein 2 prime
92	 29.03	-1	100199..100291	+	30	70725093	-	SH0092	-	mecRI
93	 33.93	0	100329..101003	+	224	70725094	tnp	SH0093	-	transposase for IS431mec
94	 33.33	0	101287..101634	-	115	70725095	-	SH0094	-	hypothetical protein
95	 38.30	+1	101712..102395	+	227	70725096	-	SH0095	-	hypothetical protein
96	 37.54	+1	102417..103082	+	221	70725097	-	SH0096	-	hypothetical protein
97	 38.71	+1	103086..104090	+	334	70725098	-	SH0097	-	hypothetical protein
98	 31.69	0	104099..104464	+	121	70725099	-	SH0098	-	hypothetical protein
99	 29.77	0	105000..105617	+	205	70725100	cadD	SH0099	-	cadmium binding protein CadD
100	 27.49	-1	105636..105977	+	113	70725101	cadX	SH0100	-	hypothetical protein
32.76	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.