IslandPath Analysis: Chlamydophila caviae GPIC



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.42   STD DEV: 2.69
Chlamydophila caviae GPIC, complete genome - 1..1173390
998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.15	0	57..1052	+	331	29839770	hemB	CCA00001	-	delta-aminolevulinic acid dehydratase
2	 38.71	0	1068..2480	-	470	29839771	nqrA	CCA00002	-	Na(+)-translocating NADH-quinone reductase subunit A
3	 32.18	-2	2502..2936	-	144	29839772	-	CCA00003	-	hypothetical protein
4	 36.54	-1	3048..5201	+	717	29839773	greA	CCA00004	-	fused transcript cleavage factor/uncharacterized domain-containing protein
5	 38.79	0	5353..6543	+	396	29839774	-	CCA00005	-	aromatic amino acid aminotransferase
6	 38.71	0	6839..7861	+	340	29839775	-	CCA00006	-	hypothetical protein
7	 36.55	-1	7821..10958	-	1045	29839776	recB	CCA00007	-	exodeoxyribonuclease V, beta subunit
8	 36.89	0	10945..14010	-	1021	29839777	recC	CCA00008	-	exodeoxyribonuclease V, gamma subunit
9	 39.11	0	14009..15721	+	570	29839778	-	CCA00009	-	efflux protein, putative
10	 39.96	0	15743..16738	-	331	29839779	-	CCA00010	-	hypothetical protein
11	 40.79	0	16965..17594	+	209	29839780	rpsD	CCA00011	-	30S ribosomal protein S4
12	 40.92	0	17659..18528	-	289	29839781	nfo	CCA00012	-	endonuclease IV
13	 41.06	0	18594..20237	+	547	29839782	-	CCA00013	-	hypothetical protein
14	 39.72	0	20346..21614	+	422	29839783	-	CCA00014	-	hypothetical protein
15	 43.90	+1	21725..23635	+	636	29839784	-	CCA00015	-	hypothetical protein
16	 38.04	0	23820..26432	-	870	29839785	-	CCA00016	-	hypothetical protein
17	 37.35	0	26634..29150	+	838	29839786	-	CCA00017	-	hypothetical protein
18	 38.10	0	29189..29419	+	76	29839787	-	CCA00018	-	hypothetical protein
19	 38.04	0	29416..30138	-	240	29839788	-	CCA00019	-	ABC transporter, ATP-binding protein
20	 38.89	0	30144..30629	-	161	29839789	-	CCA00020	-	hypothetical protein
21	 41.73	0	30626..31435	-	269	29839790	kdsA	CCA00021	-	2-dehydro-3-deoxyphosphooctonate aldolase
22	 40.51	0	31875..32111	-	78	29839791	-	CCA00022	-	hypothetical protein
23	 39.16	0	33445..33753	-	102	29839792	-	CCA00024	-	hypothetical protein
24	 36.73	0	33755..34048	-	97	29839793	-	CCA00025	-	hypothetical protein
25	 38.54	0	34161..35600	-	479	29839794	-	CCA00026	-	DNA topoisomerase IV subunit A
26	 36.04	-1	35604..37412	-	602	29839795	-	CCA00027	-	DNA topoisomerase IV subunit B
27	 37.86	0	37967..38983	+	338	29839796	hemA	CCA00028	-	glutamyl-tRNA reductase
28	 38.02	0	39330..39734	+	134	29839797	-	CCA00029	-	hypothetical protein
29	 39.71	0	39754..42231	+	825	29839798	-	CCA00030	-	FHA domain-containing protein
30	 37.70	0	42278..42529	+	83	29839799	-	CCA00031	-	hypothetical protein
31	 38.70	0	42553..42813	+	86	29839800	-	CCA00032	-	hypothetical protein
32	 36.67	-1	42832..43281	+	149	29839801	-	CCA00033	-	hypothetical protein
33	 38.57	0	43325..43993	+	222	29839802	-	CCA00034	-	hypothetical protein
34	 44.17	+1	43995..45323	+	442	29839803	sctN	CCA00035	-	type III secretion system ATPase
35	 38.54	0	45344..45862	+	172	29839804	-	CCA00036	-	hypothetical protein
36	 38.16	0	45853..46701	+	282	29839805	-	CCA00037	-	hypothetical protein
37	 40.23	0	46714..47829	+	371	29839806	sctQ	CCA00038	-	type III secretion system protein
38	 38.45	0	47847..49352	+	501	29839807	pkn5	CCA00039	-	serine/threonine-protein kinase
39	 39.93	0	49349..52078	+	909	29839808	sctC	CCA00040	-	type III secretion protein SctC
40	 39.09	0	52707..53783	-	358	29839809	-	CCA00041	-	ATP:guanido phosphotransferase
41	 40.66	0	53767..54285	-	172	29839810	-	CCA00042	-	hypothetical protein
42	 37.75	0	54691..55233	-	180	29839811	frr	CCA00043	-	ribosome recycling factor
43	 39.00	0	55235..55957	-	240	29839812	pyrH	CCA00044	-	uridylate kinase
44	 39.22	0	55973..56821	-	282	29839813	tsf	CCA00045	-	elongation factor Ts
45	 38.51	0	56821..57651	-	276	29839814	rpsB	CCA00046	-	30S ribosomal protein S2
46	 42.99	+1	58028..59197	-	389	29839815	ompA	CCA00047	-	major outer membrane protein, porin
47	 40.29	0	59801..63076	+	1091	29839816	pbp2	CCA00048	-	PBP2-transglycolase/transpeptidase
48	 40.67	0	63144..64151	+	335	29839817	-	CCA00049	-	type III secretion chaperone, putative
49	 40.55	0	64506..65960	+	484	29839818	-	CCA00050	-	cysteine desulfurase activator complex subunit SufB
50	 38.93	0	65964..66731	+	255	29839819	-	CCA00051	-	ABC transporter, ATP-binding protein
51	 40.00	0	66733..68007	+	424	29839820	-	CCA00052	-	hypothetical protein
52	 40.95	0	67997..69217	+	406	29839821	b1680	CCA00053	-	aminotransferase, class V
53	 37.95	0	69220..69999	-	259	29839822	-	CCA00054	-	hypothetical protein
54	 39.30	0	70193..70846	-	217	29839823	-	CCA00055	-	hypothetical protein
55	 41.01	0	71087..71920	+	277	29839824	parB	CCA00056	-	ParB family chromosome partioning protein
56	 37.98	0	71959..72927	-	322	29839825	dppF	CCA00057	-	peptide ABC transporter, ATP-binding protein
57	 41.95	0	72920..73882	-	320	29839826	-	CCA00058	-	peptide ABC transporter, ATP-binding protein
58	 39.41	0	73936..74610	+	224	29839827	-	CCA00059	-	hypothetical protein
59	 42.70	+1	74617..75897	+	426	29839828	-	CCA00060	-	phosphate permease family protein
60	 44.80	+1	75935..77146	+	403	29839829	pgk	CCA00061	-	phosphoglycerate kinase
61	 43.46	+1	77599..78990	+	463	29839830	-	CCA00062	-	hypothetical protein
62	 43.35	+1	79009..80226	+	405	29839831	-	CCA00063	-	hypothetical protein
63	 38.96	0	80322..81476	+	384	29839832	-	CCA00064	-	hypothetical protein
64	 40.68	0	81600..82715	+	371	29839833	-	CCA00065	-	Nol1/Nop2/Sun family protein
65	 36.67	-1	82721..83110	-	129	29839834	-	CCA00066	-	hypothetical protein
66	 42.32	+1	83161..84462	-	433	29839835	-	CCA00067	-	D-alanyl-D-alanine carboxypeptidase
67	 40.19	0	84573..84995	+	140	29839836	-	CCA00068	-	hypothetical protein
68	 38.13	0	84982..85440	-	152	29839837	-	CCA00069	-	rsbW protein, putative
69	 40.00	0	85409..86008	-	199	29839838	-	CCA00070	-	hypothetical protein
70	 36.05	-1	86025..86981	-	318	29839839	-	CCA00071	-	TPR domain-containing protein
71	 39.77	0	87134..88018	+	294	29839840	-	CCA00072	-	hypothetical protein
72	 38.99	0	88015..91743	-	1242	29839841	dnaE	CCA00073	-	DNA polymerase III subunit alpha
73	 40.28	0	91769..93136	-	455	29839842	uhpC	CCA00074	-	sugar phosphate sensor protein UhpC
74	 38.81	0	93368..93586	+	72	29839843	-	CCA00075	-	hypothetical protein
75	 40.06	0	93655..94947	+	430	29839844	hisS	CCA00076	-	histidyl-tRNA synthetase
76	 38.75	0	94922..96676	+	584	29839845	aspS	CCA00077	-	aspartyl-tRNA synthetase
77	 39.32	0	96752..97519	+	255	29839846	mip	CCA00078	-	peptidyl-prolyl cis-trans isomerase Mip
78	 38.85	0	97516..97986	+	156	29839847	-	CCA00079	-	RNA methyltransferase
79	 40.13	0	97983..98291	-	102	29839848	trx	CCA00080	-	thioredoxin
80	 29.29	-2	98417..98515	+	32	29839849	-	CCA00081	-	hypothetical protein
81	 28.85	-2	98701..98856	+	51	29839850	-	CCA00082	-	hypothetical protein
82	 37.80	0	99311..100027	+	238	29839851	-	CCA00083	-	hypothetical protein
83	 40.91	0	100006..100467	+	153	29839852	-	CCA00084	-	hypothetical protein
84	 37.33	0	100477..101226	+	249	29839853	dnaQ-1	CCA00085	-	DNA polymerase III subunit epsilon
85	 38.85	0	101387..101857	+	156	29839854	-	CCA00086	-	cytosolic acyl-CoA thioester hydrolase family protein
86	 39.67	0	101865..103490	+	541	29839855	lnt	CCA00087	-	apolipoprotein N-acyltransferase
87	 42.54	+1	103505..104362	+	285	29839856	lpxC	CCA00088	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
88	 39.35	0	104377..104841	+	154	29839857	fabZ	CCA00089	-	(3R)-hydroxymyristoyl-ACP dehydratase
89	 41.55	0	104851..105690	+	279	29839858	lpxA	CCA00090	-	UDP-N-acetylglucosamine acyltransferase
90	 42.34	+1	105677..106642	+	321	29839859	fmt	CCA00091	-	methionyl-tRNA formyltransferase
91	 42.97	+1	106758..107732	+	324	29839860	-	CCA00092	-	hypothetical protein
92	 40.84	0	108028..108693	+	221	29839861	rplC	CCA00093	-	50S ribosomal protein L3
93	 40.74	0	108710..109384	+	224	29839862	rplD	CCA00094	-	50S ribosomal protein L4
94	 38.39	0	109401..109736	+	111	29839863	rplW	CCA00095	-	50S ribosomal protein L23
95	 42.57	+1	109758..110612	+	284	29839864	rplB	CCA00096	-	50S ribosomal protein L2
96	 37.45	0	110618..110884	+	88	29839865	rpsS	CCA00097	-	30S ribosomal protein S19
97	 44.94	+2	110903..111238	+	111	29839866	rplV	CCA00098	-	50S ribosomal protein L22
98	 42.41	+1	111247..111918	+	223	29839867	rpsC	CCA00099	-	30S ribosomal protein S3
99	 42.93	+1	111945..112361	+	138	29839868	rplP	CCA00100	-	50S ribosomal protein L16
100	 37.90	0	112367..112585	+	72	29839869	rpmC	CCA00101	-	50S ribosomal protein L29
39.42	MEAN

2.69	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.